RNA–Protein interactions for RNA: ENST00000481242.5

GARNL3-216, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 4,816 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-216ENST00000481242 VPS37CA5D8V6 355 aaPredicted RBP11.36□□□□□ -0.59
GARNL3-216ENST00000481242 ZC3H6P61129 1189 aaKnown RBP11.36□□□□□ -0.59
GARNL3-216ENST00000481242 FOXD4L5Q5VV16 416 aaPredicted RBP11.36□□□□□ -0.59
GARNL3-216ENST00000481242 CCDC70Q6NSX1 233 aa11.36□□□□□ -0.59
GARNL3-216ENST00000481242 FOXD4L4Q8WXT5 416 aaPredicted RBP11.36□□□□□ -0.59
GARNL3-216ENST00000481242 R3HCC1Q9Y3T6 440 aaKnown RBP11.36□□□□□ -0.59
GARNL3-216ENST00000481242 TAF3Q5VWG9 929 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 NSD2O96028 1365 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 RPAP2Q8IXW5 612 aaPredicted RBP11.35□□□□□ -0.59
GARNL3-216ENST00000481242 NSD3Q9BZ95 1437 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 FAM177BA6PVY3 158 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 FAM135AQ9P2D6 1515 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 HSP90AB3PQ58FF7 597 aa11.35□□□□□ -0.59
GARNL3-216ENST00000481242 IKQ13123 557 aaPredicted RBP11.34□□□□□ -0.59
GARNL3-216ENST00000481242 LRRCC1Q9C099 1032 aa11.34□□□□□ -0.59
GARNL3-216ENST00000481242 PCF11O94913 1555 aaKnown RBP11.34□□□□□ -0.59
GARNL3-216ENST00000481242 PDIA4P13667 645 aaKnown RBP11.34□□□□□ -0.59
GARNL3-216ENST00000481242 ANKRD1Q15327 319 aa11.34□□□□□ -0.59
GARNL3-216ENST00000481242 CCAR1Q8IX12 1150 aaKnown RBP11.34□□□□□ -0.59
GARNL3-216ENST00000481242 TTC21BQ7Z4L5 1316 aa11.34□□□□□ -0.59
GARNL3-216ENST00000481242 TEX13AQ9BXU3 409 aaPredicted RBP11.33□□□□□ -0.6
GARNL3-216ENST00000481242 TMOD3Q9NYL9 352 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 TNRQ92752 1358 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 DNAJC2Q99543 621 aaKnown RBP11.33□□□□□ -0.6
GARNL3-216ENST00000481242 WDR97A6NE52 1622 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 PTPN23Q9H3S7 1636 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 FYB1O15117 783 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 IGHMBP2P38935 993 aaKnown RBP11.33□□□□□ -0.6
GARNL3-216ENST00000481242 RRS1Q15050 365 aaKnown RBP11.33□□□□□ -0.6
GARNL3-216ENST00000481242 LARP1Q6PKG0 1096 aaKnown RBP11.33□□□□□ -0.6
GARNL3-216ENST00000481242 CTNNA3Q9UI47 895 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 RABEP1Q15276 862 aa11.33□□□□□ -0.6
GARNL3-216ENST00000481242 NOB1Q9ULX3 412 aaKnown RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 ZNF608Q9ULD9 1512 aaPredicted RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 TMPOP42166 694 aaKnown RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 SASS6Q6UVJ0 657 aa11.32□□□□□ -0.6
GARNL3-216ENST00000481242 CALRP27797 417 aaKnown RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 PCMTD1Q96MG8 357 aaPredicted RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 C14orf93Q9H972 538 aaKnown RBP11.32□□□□□ -0.6
GARNL3-216ENST00000481242 TXLNAP40222 546 aa11.32□□□□□ -0.6
GARNL3-216ENST00000481242 WAPLQ7Z5K2 1190 aa11.32□□□□□ -0.6
GARNL3-216ENST00000481242 TAF7Q15545 349 aaPredicted RBP11.31□□□□□ -0.6
GARNL3-216ENST00000481242 JMYQ8N9B5 988 aa11.31□□□□□ -0.6
GARNL3-216ENST00000481242 NAT10Q9H0A0 1025 aaKnown RBP11.31□□□□□ -0.6
GARNL3-216ENST00000481242 PLCH2O75038 1416 aa11.31□□□□□ -0.6
GARNL3-216ENST00000481242 TRIM22Q8IYM9 498 aa11.31□□□□□ -0.6
GARNL3-216ENST00000481242 TSR2Q969E8 191 aaKnown RBP11.31□□□□□ -0.6
GARNL3-216ENST00000481242 IFT57Q9NWB7 429 aa11.31□□□□□ -0.6
GARNL3-216ENST00000481242 TMOD2Q9NZR1 351 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 AKAP2Q9Y2D5 859 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 THOC2Q8NI27 1593 aaKnown RBP11.3□□□□□ -0.6
GARNL3-216ENST00000481242 FOXO3O43524 673 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 PRM3Q9NNZ6 103 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 MVPQ14764 893 aaKnown RBP11.3□□□□□ -0.6
GARNL3-216ENST00000481242 EXOC5O00471 708 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 ZPR1O75312 459 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 MYL6BP14649 208 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 PIP4K2AP48426 406 aaPredicted RBP11.3□□□□□ -0.6
GARNL3-216ENST00000481242 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 ZNF287Q9HBT7 754 aa11.3□□□□□ -0.6
GARNL3-216ENST00000481242 SCAF11Q99590 1463 aaKnown RBP11.3□□□□□ -0.6
GARNL3-216ENST00000481242 TOM1O60784 492 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 XPCQ01831 940 aaPredicted RBP11.29□□□□□ -0.6
GARNL3-216ENST00000481242 KRT32Q14532 448 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 FBXO31Q5XUX0 539 aaPredicted RBP11.29□□□□□ -0.6
GARNL3-216ENST00000481242 NGLY1Q96IV0 654 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 SRGAP3O43295 1099 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 MSH6P52701 1360 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 SLC4A3P48751 1232 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 ALDH1L2Q3SY69 923 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 OLFM4Q6UX06 510 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.29□□□□□ -0.6
GARNL3-216ENST00000481242 KRT28Q7Z3Y7 464 aa11.29□□□□□ -0.6
GARNL3-216ENST00000481242 ZNF396Q96N95 335 aaPredicted RBP11.29□□□□□ -0.6
GARNL3-216ENST00000481242 PPP1R1BQ9UD71 204 aaPredicted RBP11.29□□□□□ -0.6
GARNL3-216ENST00000481242 MBD3O95983 291 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 ZMYND15Q9H091 742 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 CYP46A1Q9Y6A2 500 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 BIVM-ERCC5R4GMW8 1640 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 UHRF1BP1LA0JNW5 1464 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 FOXD4L6Q3SYB3 417 aaPredicted RBP11.28□□□□□ -0.6
GARNL3-216ENST00000481242 FOXD4L3Q6VB84 417 aaPredicted RBP11.28□□□□□ -0.6
GARNL3-216ENST00000481242 SDF4Q9BRK5 362 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 PDZRN3Q9UPQ7 1066 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 KDM5BQ9UGL1 1544 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 LETM1O95202 739 aaPredicted RBP11.28□□□□□ -0.6
GARNL3-216ENST00000481242 WWC2Q6AWC2 1192 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
GARNL3-216ENST00000481242 TTC21AQ8NDW8 1320 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 ZNF518AQ6AHZ1 1483 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 CDKL5O76039 1030 aa11.28□□□□□ -0.6
GARNL3-216ENST00000481242 NEK4P51957 841 aa11.27□□□□□ -0.6
GARNL3-216ENST00000481242 NPHP3Q7Z494 1330 aa11.27□□□□□ -0.6
GARNL3-216ENST00000481242 ASXL2Q76L83 1435 aa11.27□□□□□ -0.61
GARNL3-216ENST00000481242 RAB11FIP3O75154 756 aa11.27□□□□□ -0.61
GARNL3-216ENST00000481242 ADGRF5Q8IZF2 1346 aa11.27□□□□□ -0.61
GARNL3-216ENST00000481242 IFIT1P09914 478 aaKnown RBP11.27□□□□□ -0.61
GARNL3-216ENST00000481242 GPS2Q13227 327 aa11.27□□□□□ -0.61
GARNL3-216ENST00000481242 DUSP27Q5VZP5 1158 aa11.27□□□□□ -0.61
GARNL3-216ENST00000481242 FMNL2Q96PY5 1086 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms