RNA–Protein interactions for RNA: ENST00000479099.2

RC3H1-204, Transcript of ring finger and CCCH-type domains 1, humanhuman

TSL 3

Gene RC3H1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-204ENST00000479099 TUSC1Q2TAM9 212 aa8.56□□□□□ -1.04
RC3H1-204ENST00000479099 MYSM1Q5VVJ2 828 aa8.56□□□□□ -1.04
RC3H1-204ENST00000479099 TREML4Q6UXN2 200 aa8.56□□□□□ -1.04
RC3H1-204ENST00000479099 CABLES1Q8TDN4 633 aa8.56□□□□□ -1.04
RC3H1-204ENST00000479099 IVNS1ABPQ9Y6Y0 642 aa8.56□□□□□ -1.04
RC3H1-204ENST00000479099 CSPP1Q1MSJ5 1256 aa8.55□□□□□ -1.04
RC3H1-204ENST00000479099 TRIM47Q96LD4 638 aa8.55□□□□□ -1.04
RC3H1-204ENST00000479099 LIMD1Q9UGP4 676 aa8.55□□□□□ -1.04
RC3H1-204ENST00000479099 F12P00748 615 aaPredicted RBP8.54□□□□□ -1.04
RC3H1-204ENST00000479099 MPNDQ8N594 471 aa8.54□□□□□ -1.04
RC3H1-204ENST00000479099 KIFC2Q96AC6 838 aa8.54□□□□□ -1.04
RC3H1-204ENST00000479099 TAF7LQ5H9L4 462 aa8.53□□□□□ -1.04
RC3H1-204ENST00000479099 LCE2AQ5TA79 106 aaPredicted RBP8.53□□□□□ -1.04
RC3H1-204ENST00000479099 CERS3Q8IU89 383 aa8.53□□□□□ -1.04
RC3H1-204ENST00000479099 MAP10Q9P2G4 905 aa8.53□□□□□ -1.04
RC3H1-204ENST00000479099 TLL2Q9Y6L7 1015 aa8.53□□□□□ -1.04
RC3H1-204ENST00000479099 ARID4BQ4LE39 1312 aaPredicted RBP8.53□□□□□ -1.04
RC3H1-204ENST00000479099 CADPSQ9ULU8 1353 aa8.52□□□□□ -1.05
RC3H1-204ENST00000479099 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 SMARCA5O60264 1052 aaPredicted RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 LILRB3O75022 631 aa8.52□□□□□ -1.05
RC3H1-204ENST00000479099 SNRPBP14678 240 aaKnown RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 NUTM2DQ5VT03 806 aaPredicted RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 CC2D2BQ6DHV5 1058 aa8.52□□□□□ -1.05
RC3H1-204ENST00000479099 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
RC3H1-204ENST00000479099 PBXIP1Q96AQ6 731 aa8.52□□□□□ -1.05
RC3H1-204ENST00000479099 DRC1Q96MC2 740 aa8.52□□□□□ -1.05
RC3H1-204ENST00000479099 CAPN5O15484 640 aaPredicted RBP8.51□□□□□ -1.05
RC3H1-204ENST00000479099 NCLP19338 710 aaKnown RBP8.51□□□□□ -1.05
RC3H1-204ENST00000479099 QPCTQ16769 361 aa8.51□□□□□ -1.05
RC3H1-204ENST00000479099 ANKRD13AQ8IZ07 590 aa8.51□□□□□ -1.05
RC3H1-204ENST00000479099 CALR3Q96L12 384 aaKnown RBP8.51□□□□□ -1.05
RC3H1-204ENST00000479099 KIAA1522Q9P206 1035 aaPredicted RBP8.51□□□□□ -1.05
RC3H1-204ENST00000479099 CSB-PGBD3P0DP91 1061 aa8.5□□□□□ -1.05
RC3H1-204ENST00000479099 CLK2P49760 499 aaKnown RBP8.5□□□□□ -1.05
RC3H1-204ENST00000479099 FAM174AQ8TBP5 190 aa8.5□□□□□ -1.05
RC3H1-204ENST00000479099 TSC1Q92574 1164 aa8.5□□□□□ -1.05
RC3H1-204ENST00000479099 PER1O15534 1290 aaPredicted RBP8.49□□□□□ -1.05
RC3H1-204ENST00000479099 WFS1O76024 890 aa8.49□□□□□ -1.05
RC3H1-204ENST00000479099 SKIV2LQ15477 1246 aaKnown RBP8.49□□□□□ -1.05
RC3H1-204ENST00000479099 HELBQ8NG08 1087 aaPredicted RBP8.49□□□□□ -1.05
RC3H1-204ENST00000479099 NFX1Q12986 1120 aaKnown RBP8.48□□□□□ -1.05
RC3H1-204ENST00000479099 NNTQ13423 1086 aa8.48□□□□□ -1.05
RC3H1-204ENST00000479099 FOXJ1Q92949 421 aa8.48□□□□□ -1.05
RC3H1-204ENST00000479099 C8orf37Q96NL8 207 aa8.48□□□□□ -1.05
RC3H1-204ENST00000479099 BCCIPQ9P287 314 aaKnown RBP eCLIP8.48□□□□□ -1.05
RC3H1-204ENST00000479099 BMP1P13497 986 aa8.47□□□□□ -1.05
RC3H1-204ENST00000479099 TRIM46Q7Z4K8 759 aa8.47□□□□□ -1.05
RC3H1-204ENST00000479099 ARMC2Q8NEN0 867 aa8.47□□□□□ -1.05
RC3H1-204ENST00000479099 SREK1Q8WXA9 508 aaKnown RBP8.47□□□□□ -1.05
RC3H1-204ENST00000479099 MRRFQ96E11 262 aaKnown RBP8.47□□□□□ -1.05
RC3H1-204ENST00000479099 PSMD1Q99460 953 aa8.47□□□□□ -1.05
RC3H1-204ENST00000479099 ADH1CP00326 375 aa8.46□□□□□ -1.06
RC3H1-204ENST00000479099 RTL5Q5HYW3 569 aaPredicted RBP8.46□□□□□ -1.06
RC3H1-204ENST00000479099 TXNDC2Q86VQ3 553 aa8.46□□□□□ -1.06
RC3H1-204ENST00000479099 BPHLQ86WA6 291 aaPredicted RBP8.46□□□□□ -1.06
RC3H1-204ENST00000479099 BANK1Q8NDB2 785 aa8.46□□□□□ -1.06
RC3H1-204ENST00000479099 CDK15Q96Q40 435 aa8.46□□□□□ -1.06
RC3H1-204ENST00000479099 AGERQ15109 404 aa8.45□□□□□ -1.06
RC3H1-204ENST00000479099 ZNF592Q92610 1267 aa8.45□□□□□ -1.06
RC3H1-204ENST00000479099 GLMNQ92990 594 aa8.45□□□□□ -1.06
RC3H1-204ENST00000479099 POLR3EQ9NVU0 708 aa8.45□□□□□ -1.06
RC3H1-204ENST00000479099 TERTO14746 1132 aaKnown RBP8.44□□□□□ -1.06
RC3H1-204ENST00000479099 SRPK2P78362 688 aaKnown RBP8.44□□□□□ -1.06
RC3H1-204ENST00000479099 NBPF14Q5TI25 921 aa8.44□□□□□ -1.06
RC3H1-204ENST00000479099 TCF3P15923 654 aa8.43□□□□□ -1.06
RC3H1-204ENST00000479099 TIMP2P16035 220 aa8.43□□□□□ -1.06
RC3H1-204ENST00000479099 C4orf48Q5BLP8 95 aa8.43□□□□□ -1.06
RC3H1-204ENST00000479099 TICAM2Q86XR7 235 aa8.43□□□□□ -1.06
RC3H1-204ENST00000479099 WWC1Q8IX03 1113 aa8.43□□□□□ -1.06
RC3H1-204ENST00000479099 GNEQ9Y223 722 aaKnown RBP8.43□□□□□ -1.06
RC3H1-204ENST00000479099 ERCC3P19447 782 aa8.42□□□□□ -1.06
RC3H1-204ENST00000479099 WDR4P57081 412 aaKnown RBP8.42□□□□□ -1.06
RC3H1-204ENST00000479099 NR5A1Q13285 461 aa8.42□□□□□ -1.06
RC3H1-204ENST00000479099 ARID5BQ14865 1188 aa8.42□□□□□ -1.06
RC3H1-204ENST00000479099 KLF16Q9BXK1 252 aaPredicted RBP8.42□□□□□ -1.06
RC3H1-204ENST00000479099 VRTNQ9H8Y1 702 aa8.42□□□□□ -1.06
RC3H1-204ENST00000479099 SNRKQ9NRH2 765 aa8.42□□□□□ -1.06
RC3H1-204ENST00000479099 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.42□□□□□ -1.06
RC3H1-204ENST00000479099 ZC3H4Q9UPT8 1303 aaKnown RBP8.42□□□□□ -1.06
RC3H1-204ENST00000479099 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.41□□□□□ -1.06
RC3H1-204ENST00000479099 CARNS1A5YM72 827 aa8.41□□□□□ -1.06
RC3H1-204ENST00000479099 WIPF1O43516 503 aa8.41□□□□□ -1.06
RC3H1-204ENST00000479099 CLSTN1O94985 981 aa8.41□□□□□ -1.06
RC3H1-204ENST00000479099 MRPL14Q6P1L8 145 aaKnown RBP8.41□□□□□ -1.06
RC3H1-204ENST00000479099 SH3RF1Q7Z6J0 888 aa8.41□□□□□ -1.06
RC3H1-204ENST00000479099 PROCA1Q8NCQ7 364 aaPredicted RBP8.41□□□□□ -1.06
RC3H1-204ENST00000479099 GPKOWQ92917 476 aaPredicted RBP eCLIP8.41□□□□□ -1.065e-6■□□□□ 10.3
RC3H1-204ENST00000479099 ZFP42Q96MM3 310 aa8.41□□□□□ -1.06
RC3H1-204ENST00000479099 SH3BP5LQ7L8J4 393 aa8.4□□□□□ -1.06
RC3H1-204ENST00000479099 UBXN4Q92575 508 aa8.4□□□□□ -1.06
RC3H1-204ENST00000479099 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.4□□□□□ -1.06
RC3H1-204ENST00000479099 C1QTNF2Q9BXJ5 285 aa8.4□□□□□ -1.06
RC3H1-204ENST00000479099 BRPF3Q9ULD4 1205 aa8.4□□□□□ -1.06
RC3H1-204ENST00000479099 POM121CA8CG34 1229 aa8.39□□□□□ -1.07
RC3H1-204ENST00000479099 GRM5P41594 1212 aa8.39□□□□□ -1.07
RC3H1-204ENST00000479099 CTDSPL2Q05D32 466 aa8.39□□□□□ -1.07
RC3H1-204ENST00000479099 SCARF1Q14162 830 aa8.39□□□□□ -1.07
RC3H1-204ENST00000479099 NXF1Q9UBU9 619 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms