RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 COL18A1P39060 1754 aa20.89■□□□□ 0.93
SEC13-215ENST00000477547 ABCC6O95255 1503 aa20.89■□□□□ 0.93
SEC13-215ENST00000477547 NRAPQ86VF7 1730 aa20.87■□□□□ 0.93
SEC13-215ENST00000477547 UNC5CLQ8IV45 518 aa20.87■□□□□ 0.93
SEC13-215ENST00000477547 KCNH5Q8NCM2 988 aa20.87■□□□□ 0.93
SEC13-215ENST00000477547 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.87■□□□□ 0.93
SEC13-215ENST00000477547 GCP02774 474 aa20.86■□□□□ 0.93
SEC13-215ENST00000477547 MORC1Q86VD1 984 aa20.86■□□□□ 0.93
SEC13-215ENST00000477547 CPDO75976 1380 aa20.85■□□□□ 0.93
SEC13-215ENST00000477547 KIAA0232Q92628 1395 aa20.85■□□□□ 0.93
SEC13-215ENST00000477547 LRP5O75197 1615 aa20.85■□□□□ 0.93
SEC13-215ENST00000477547 SLIT2O94813 1529 aa20.85■□□□□ 0.93
SEC13-215ENST00000477547 PARD3Q8TEW0 1356 aa20.84■□□□□ 0.93
SEC13-215ENST00000477547 SMG6Q86US8 1419 aaKnown RBP20.84■□□□□ 0.93
SEC13-215ENST00000477547 AATKQ6ZMQ8 1374 aa20.83■□□□□ 0.93
SEC13-215ENST00000477547 TNNT2P45379 298 aaPredicted RBP20.83■□□□□ 0.93
SEC13-215ENST00000477547 SF3B2Q13435 895 aaKnown RBP20.83■□□□□ 0.93
SEC13-215ENST00000477547 FAM208AQ9UK61 1670 aaKnown RBP20.83■□□□□ 0.93
SEC13-215ENST00000477547 ZBTB7CA1YPR0 619 aa20.82■□□□□ 0.92
SEC13-215ENST00000477547 PSDA5PKW4 1024 aaPredicted RBP20.82■□□□□ 0.92
SEC13-215ENST00000477547 ZC3H6P61129 1189 aaKnown RBP20.82■□□□□ 0.92
SEC13-215ENST00000477547 SEPT12Q8IYM1 358 aa20.82■□□□□ 0.92
SEC13-215ENST00000477547 PRDM11Q9NQV5 511 aa20.81■□□□□ 0.92
SEC13-215ENST00000477547 RTL1A6NKG5 1358 aa20.81■□□□□ 0.92
SEC13-215ENST00000477547 MAP3K19Q56UN5 1328 aa20.8■□□□□ 0.92
SEC13-215ENST00000477547 FBLN1P23142 703 aa20.78■□□□□ 0.92
SEC13-215ENST00000477547 RRS1Q15050 365 aaKnown RBP20.78■□□□□ 0.92
SEC13-215ENST00000477547 CAMTA1Q9Y6Y1 1673 aa20.78■□□□□ 0.92
SEC13-215ENST00000477547 RGPD2P0DJD1 1756 aa20.78■□□□□ 0.92
SEC13-215ENST00000477547 CHRNA2Q15822 529 aa20.78■□□□□ 0.92
SEC13-215ENST00000477547 ARHGEF25Q86VW2 580 aa20.78■□□□□ 0.92
SEC13-215ENST00000477547 FLT4P35916 1363 aa20.76■□□□□ 0.91
SEC13-215ENST00000477547 KIF24Q5T7B8 1368 aa20.76■□□□□ 0.91
SEC13-215ENST00000477547 EMILIN1Q9Y6C2 1016 aa20.76■□□□□ 0.91
SEC13-215ENST00000477547 COL5A2P05997 1499 aaPredicted RBP20.75■□□□□ 0.91
SEC13-215ENST00000477547 WNK3Q9BYP7 1800 aa20.75■□□□□ 0.91
SEC13-215ENST00000477547 RALBP1Q15311 655 aa20.75■□□□□ 0.91
SEC13-215ENST00000477547 VPS72Q15906 364 aa20.75■□□□□ 0.91
SEC13-215ENST00000477547 KRT27Q7Z3Y8 459 aa20.75■□□□□ 0.91
SEC13-215ENST00000477547 CCDC9Q9Y3X0 531 aaKnown RBP20.75■□□□□ 0.91
SEC13-215ENST00000477547 AMPHP49418 695 aa20.74■□□□□ 0.91
SEC13-215ENST00000477547 PRKRIP1Q9H875 184 aaPredicted RBP20.74■□□□□ 0.91
SEC13-215ENST00000477547 FAM83GA6ND36 823 aa20.73■□□□□ 0.91
SEC13-215ENST00000477547 POLKQ9UBT6 870 aa20.73■□□□□ 0.91
SEC13-215ENST00000477547 PPM1GO15355 546 aaPredicted RBP20.72■□□□□ 0.91
SEC13-215ENST00000477547 ANP32CO43423 234 aa20.72■□□□□ 0.91
SEC13-215ENST00000477547 ONECUT3O60422 494 aaPredicted RBP20.72■□□□□ 0.91
SEC13-215ENST00000477547 PPP2R1AP30153 589 aa20.72■□□□□ 0.91
SEC13-215ENST00000477547 MYBBP1AQ9BQG0 1328 aaKnown RBP20.71■□□□□ 0.91
SEC13-215ENST00000477547 COL3A1P02461 1466 aaPredicted RBP20.71■□□□□ 0.91
SEC13-215ENST00000477547 HOXC9P31274 260 aa20.71■□□□□ 0.91
SEC13-215ENST00000477547 A0A0G2JS52 829 aa20.7■□□□□ 0.9
SEC13-215ENST00000477547 BAG6P46379 1132 aa20.7■□□□□ 0.9
SEC13-215ENST00000477547 MYT1Q01538 1121 aa20.7■□□□□ 0.9
SEC13-215ENST00000477547 DIEXFQ68CQ4 756 aaKnown RBP20.7■□□□□ 0.9
SEC13-215ENST00000477547 RGPD1P0DJD0 1748 aa20.7■□□□□ 0.9
SEC13-215ENST00000477547 INSRP06213 1382 aa20.69■□□□□ 0.9
SEC13-215ENST00000477547 IP6K1Q92551 441 aa20.69■□□□□ 0.9
SEC13-215ENST00000477547 BTG4Q9NY30 223 aa20.69■□□□□ 0.9
SEC13-215ENST00000477547 MTHFSP49914 203 aa20.68■□□□□ 0.9
SEC13-215ENST00000477547 EN1Q05925 392 aaPredicted RBP20.67■□□□□ 0.9
SEC13-215ENST00000477547 AXIN2Q9Y2T1 843 aa20.67■□□□□ 0.9
SEC13-215ENST00000477547 ERBB3P21860 1342 aa20.67■□□□□ 0.9
SEC13-215ENST00000477547 R3HDM1Q15032 1099 aaKnown RBP20.66■□□□□ 0.9
SEC13-215ENST00000477547 FAM98CQ17RN3 349 aaKnown RBP20.65■□□□□ 0.9
SEC13-215ENST00000477547 HSP90AB2PQ58FF8 381 aa20.65■□□□□ 0.9
SEC13-215ENST00000477547 FAM182BQ5T319 152 aa20.65■□□□□ 0.9
SEC13-215ENST00000477547 STRN4Q9NRL3 753 aa20.65■□□□□ 0.9
SEC13-215ENST00000477547 ANKRD24Q8TF21 1146 aa20.64■□□□□ 0.89
SEC13-215ENST00000477547 LTV1Q96GA3 475 aaPredicted RBP20.64■□□□□ 0.89
SEC13-215ENST00000477547 CRB1P82279 1406 aa20.64■□□□□ 0.89
SEC13-215ENST00000477547 PARP4Q9UKK3 1724 aaKnown RBP20.63■□□□□ 0.89
SEC13-215ENST00000477547 CFAP53Q96M91 514 aa20.63■□□□□ 0.89
SEC13-215ENST00000477547 WDR17Q8IZU2 1322 aa20.63■□□□□ 0.89
SEC13-215ENST00000477547 CSB-PGBD3P0DP91 1061 aa20.62■□□□□ 0.89
SEC13-215ENST00000477547 EVA1CP58658 441 aa20.61■□□□□ 0.89
SEC13-215ENST00000477547 EIF4A2Q14240 407 aaKnown RBP20.59■□□□□ 0.89
SEC13-215ENST00000477547 LARP1Q6PKG0 1096 aaKnown RBP20.59■□□□□ 0.89
SEC13-215ENST00000477547 NCAPD2Q15021 1401 aa20.58■□□□□ 0.88
SEC13-215ENST00000477547 THSD7AQ9UPZ6 1657 aa20.58■□□□□ 0.88
SEC13-215ENST00000477547 LRRC37A3O60309 1634 aa20.57■□□□□ 0.88
SEC13-215ENST00000477547 TOM1L2Q6ZVM7 507 aa20.57■□□□□ 0.88
SEC13-215ENST00000477547 DIAPH1O60610 1272 aaKnown RBP20.56■□□□□ 0.88
SEC13-215ENST00000477547 EZH2Q15910 746 aaKnown RBP20.56■□□□□ 0.88
SEC13-215ENST00000477547 NLRP2Q9NX02 1062 aa20.56■□□□□ 0.88
SEC13-215ENST00000477547 PKD1L3Q7Z443 1732 aa20.55■□□□□ 0.88
SEC13-215ENST00000477547 SPATA31A5Q5VU36 1347 aa20.55■□□□□ 0.88
SEC13-215ENST00000477547 SPATA31A7Q8IWB4 1347 aa20.55■□□□□ 0.88
SEC13-215ENST00000477547 SHANK3Q9BYB0 1731 aa20.54■□□□□ 0.88
SEC13-215ENST00000477547 TNS1Q9HBL0 1735 aaKnown RBP20.54■□□□□ 0.88
SEC13-215ENST00000477547 SPATA31A1Q5TZJ5 1347 aa20.54■□□□□ 0.88
SEC13-215ENST00000477547 IGSF1Q8N6C5 1336 aa20.54■□□□□ 0.88
SEC13-215ENST00000477547 IL13P35225 146 aa20.53■□□□□ 0.88
SEC13-215ENST00000477547 USP35Q9P2H5 1018 aa20.53■□□□□ 0.88
SEC13-215ENST00000477547 USHBP1Q8N6Y0 703 aa20.53■□□□□ 0.88
SEC13-215ENST00000477547 CARD10Q9BWT7 1032 aa20.53■□□□□ 0.88
SEC13-215ENST00000477547 YY1P25490 414 aa20.52■□□□□ 0.87
SEC13-215ENST00000477547 NBPF6Q5VWK0 638 aa20.52■□□□□ 0.87
SEC13-215ENST00000477547 NBPF4Q96M43 638 aa20.52■□□□□ 0.87
SEC13-215ENST00000477547 EYA1Q99502 592 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms