RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 KCNH5Q8NCM2 988 aa15.73■□□□□ 0.11
PTPRN-213ENST00000476930 USP47Q96K76 1375 aa15.73■□□□□ 0.11
PTPRN-213ENST00000476930 CRB1P82279 1406 aa15.72■□□□□ 0.11
PTPRN-213ENST00000476930 USP31Q70CQ4 1352 aa15.72■□□□□ 0.11
PTPRN-213ENST00000476930 SBF2Q86WG5 1849 aa15.71■□□□□ 0.11
PTPRN-213ENST00000476930 EDC4Q6P2E9 1401 aaKnown RBP15.71■□□□□ 0.11
PTPRN-213ENST00000476930 TERF2IPQ9NYB0 399 aa15.71■□□□□ 0.11
PTPRN-213ENST00000476930 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
PTPRN-213ENST00000476930 TOM1L2Q6ZVM7 507 aa15.7■□□□□ 0.1
PTPRN-213ENST00000476930 THRAP3Q9Y2W1 955 aaKnown RBP15.7■□□□□ 0.1
PTPRN-213ENST00000476930 LRRC37A3O60309 1634 aa15.69■□□□□ 0.1
PTPRN-213ENST00000476930 PDE3BQ13370 1112 aa15.69■□□□□ 0.1
PTPRN-213ENST00000476930 TIMELESSQ9UNS1 1208 aa15.69■□□□□ 0.1
PTPRN-213ENST00000476930 WDR17Q8IZU2 1322 aa15.68■□□□□ 0.1
PTPRN-213ENST00000476930 TRIM37O94972 964 aa15.68■□□□□ 0.1
PTPRN-213ENST00000476930 BAG6P46379 1132 aa15.68■□□□□ 0.1
PTPRN-213ENST00000476930 FAM196AQ6ZSG2 479 aa15.68■□□□□ 0.1
PTPRN-213ENST00000476930 KAT6BQ8WYB5 2073 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 NINLQ9Y2I6 1382 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 SLC24A1O60721 1099 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 TMF1P82094 1093 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 EN1Q05925 392 aaPredicted RBP15.67■□□□□ 0.1
PTPRN-213ENST00000476930 PEAK1Q9H792 1746 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 OVOS2A0A0J9YW53 1432 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 OVOS2Q6IE36 1432 aa15.67■□□□□ 0.1
PTPRN-213ENST00000476930 ABCC6O95255 1503 aa15.66■□□□□ 0.1
PTPRN-213ENST00000476930 MYOM1P52179 1685 aa15.66■□□□□ 0.1
PTPRN-213ENST00000476930 CSB-PGBD3P0DP91 1061 aa15.65■□□□□ 0.1
PTPRN-213ENST00000476930 RGPD2P0DJD1 1756 aa15.64■□□□□ 0.1
PTPRN-213ENST00000476930 KIF20BQ96Q89 1820 aa15.64■□□□□ 0.09
PTPRN-213ENST00000476930 CCER1Q8TC90 406 aaPredicted RBP15.64■□□□□ 0.09
PTPRN-213ENST00000476930 CARD10Q9BWT7 1032 aa15.64■□□□□ 0.09
PTPRN-213ENST00000476930 ANKRD36BQ8N2N9 1353 aa15.63■□□□□ 0.09
PTPRN-213ENST00000476930 DISP2A7MBM2 1401 aa15.63■□□□□ 0.09
PTPRN-213ENST00000476930 DDB1Q16531 1140 aa15.63■□□□□ 0.09
PTPRN-213ENST00000476930 FBLN1P23142 703 aa15.62■□□□□ 0.09
PTPRN-213ENST00000476930 EZH2Q15910 746 aaKnown RBP15.62■□□□□ 0.09
PTPRN-213ENST00000476930 RREB1Q92766 1687 aa15.61■□□□□ 0.09
PTPRN-213ENST00000476930 APBA3O96018 575 aa15.61■□□□□ 0.09
PTPRN-213ENST00000476930 ERBB3P21860 1342 aa15.61■□□□□ 0.09
PTPRN-213ENST00000476930 COG3Q96JB2 828 aa15.6■□□□□ 0.09
PTPRN-213ENST00000476930 CAMKK2Q96RR4 588 aa15.6■□□□□ 0.09
PTPRN-213ENST00000476930 NUP188Q5SRE5 1749 aa15.6■□□□□ 0.09
PTPRN-213ENST00000476930 OVOS2A0A0G2JMS6 1433 aa15.6■□□□□ 0.09
PTPRN-213ENST00000476930 PSDA5PKW4 1024 aaPredicted RBP15.59■□□□□ 0.09
PTPRN-213ENST00000476930 CDCA8Q53HL2 280 aa15.59■□□□□ 0.09
PTPRN-213ENST00000476930 MARCH10Q8NA82 808 aaPredicted RBP15.59■□□□□ 0.09
PTPRN-213ENST00000476930 ANKRD24Q8TF21 1146 aa15.59■□□□□ 0.09
PTPRN-213ENST00000476930 CDCA7Q9BWT1 371 aaPredicted RBP15.59■□□□□ 0.09
PTPRN-213ENST00000476930 NLRP2Q9NX02 1062 aa15.59■□□□□ 0.09
PTPRN-213ENST00000476930 CCDC7Q96M83 1385 aa15.59■□□□□ 0.09
PTPRN-213ENST00000476930 FAM208AQ9UK61 1670 aaKnown RBP15.58■□□□□ 0.08
PTPRN-213ENST00000476930 FYB1O15117 783 aa15.58■□□□□ 0.08
PTPRN-213ENST00000476930 IP6K1Q92551 441 aa15.58■□□□□ 0.08
PTPRN-213ENST00000476930 GGNBP2Q9H3C7 697 aa15.58■□□□□ 0.08
PTPRN-213ENST00000476930 PTF1AQ7RTS3 328 aa15.57■□□□□ 0.08
PTPRN-213ENST00000476930 MAP3K19Q56UN5 1328 aa15.57■□□□□ 0.08
PTPRN-213ENST00000476930 EXOC5O00471 708 aa15.56■□□□□ 0.08
PTPRN-213ENST00000476930 LTV1Q96GA3 475 aaPredicted RBP15.56■□□□□ 0.08
PTPRN-213ENST00000476930 CARD14Q9BXL6 1004 aa15.56■□□□□ 0.08
PTPRN-213ENST00000476930 MAP2P11137 1827 aaKnown RBP15.56■□□□□ 0.08
PTPRN-213ENST00000476930 RGPD3A6NKT7 1758 aaPredicted RBP15.55■□□□□ 0.08
PTPRN-213ENST00000476930 RGPD4Q7Z3J3 1758 aa15.55■□□□□ 0.08
PTPRN-213ENST00000476930 TNS2Q63HR2 1409 aa15.54■□□□□ 0.08
PTPRN-213ENST00000476930 C11orf95C9JLR9 678 aaPredicted RBP15.54■□□□□ 0.08
PTPRN-213ENST00000476930 HOXC9P31274 260 aa15.54■□□□□ 0.08
PTPRN-213ENST00000476930 R3HDM1Q15032 1099 aaKnown RBP15.54■□□□□ 0.08
PTPRN-213ENST00000476930 RRS1Q15050 365 aaKnown RBP15.54■□□□□ 0.08
PTPRN-213ENST00000476930 PARD3Q8TEW0 1356 aa15.53■□□□□ 0.08
PTPRN-213ENST00000476930 HSPA5P11021 654 aaKnown RBP15.53■□□□□ 0.08
PTPRN-213ENST00000476930 AMPHP49418 695 aa15.53■□□□□ 0.08
PTPRN-213ENST00000476930 BCL9O00512 1426 aa15.52■□□□□ 0.08
PTPRN-213ENST00000476930 NSD3Q9BZ95 1437 aa15.52■□□□□ 0.08
PTPRN-213ENST00000476930 IL2RBP14784 551 aa15.52■□□□□ 0.08
PTPRN-213ENST00000476930 EIF4G2P78344 907 aaKnown RBP eCLIP15.52■□□□□ 0.08
PTPRN-213ENST00000476930 POLR3GLQ9BT43 218 aa15.52■□□□□ 0.08
PTPRN-213ENST00000476930 BCL11BQ9C0K0 894 aaPredicted RBP15.52■□□□□ 0.08
PTPRN-213ENST00000476930 LRP5O75197 1615 aa15.52■□□□□ 0.08
PTPRN-213ENST00000476930 SHANK3Q9BYB0 1731 aa15.51■□□□□ 0.07
PTPRN-213ENST00000476930 NHSQ6T4R5 1651 aa15.51■□□□□ 0.07
PTPRN-213ENST00000476930 BTAF1O14981 1849 aa15.5■□□□□ 0.07
PTPRN-213ENST00000476930 ANKRD26Q9UPS8 1709 aa15.49■□□□□ 0.07
PTPRN-213ENST00000476930 KCNQ2O43526 872 aa15.49■□□□□ 0.07
PTPRN-213ENST00000476930 RTL1A6NKG5 1358 aa15.49■□□□□ 0.07
PTPRN-213ENST00000476930 PLSCR1O15162 318 aa15.48■□□□□ 0.07
PTPRN-213ENST00000476930 ACSBG1Q96GR2 724 aa15.48■□□□□ 0.07
PTPRN-213ENST00000476930 HSP90AB2PQ58FF8 381 aa15.47■□□□□ 0.07
PTPRN-213ENST00000476930 PROM2Q8N271 834 aa15.47■□□□□ 0.07
PTPRN-213ENST00000476930 NBPF6Q5VWK0 638 aa15.46■□□□□ 0.07
PTPRN-213ENST00000476930 NBPF4Q96M43 638 aa15.46■□□□□ 0.07
PTPRN-213ENST00000476930 MEGF6O75095 1541 aa15.45■□□□□ 0.06
PTPRN-213ENST00000476930 NBPF14Q5TI25 921 aa15.45■□□□□ 0.06
PTPRN-213ENST00000476930 USHBP1Q8N6Y0 703 aa15.45■□□□□ 0.06
PTPRN-213ENST00000476930 DDX54Q8TDD1 881 aaKnown RBP15.45■□□□□ 0.06
PTPRN-213ENST00000476930 EMILIN1Q9Y6C2 1016 aa15.45■□□□□ 0.06
PTPRN-213ENST00000476930 DOT1LQ8TEK3 1739 aa15.45■□□□□ 0.06
PTPRN-213ENST00000476930 INSRP06213 1382 aa15.44■□□□□ 0.06
PTPRN-213ENST00000476930 FLT4P35916 1363 aa15.44■□□□□ 0.06
PTPRN-213ENST00000476930 CGNL1Q0VF96 1302 aa15.43■□□□□ 0.06
PTPRN-213ENST00000476930 PANK3Q9H999 370 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms