RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 ITPKCQ96DU7 683 aa10.18□□□□□ -0.78
PTCD3-211ENST00000476215 SNRKQ9NRH2 765 aa10.18□□□□□ -0.78
PTCD3-211ENST00000476215 C11orf95C9JLR9 678 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-211ENST00000476215 ZIC2O95409 532 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-211ENST00000476215 CCDC116Q8IYX3 515 aa10.17□□□□□ -0.78
PTCD3-211ENST00000476215 KCTD15Q96SI1 283 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-211ENST00000476215 TIMELESSQ9UNS1 1208 aa10.17□□□□□ -0.78
PTCD3-211ENST00000476215 EMILIN1Q9Y6C2 1016 aa10.17□□□□□ -0.78
PTCD3-211ENST00000476215 ZBBXA8MT70 800 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 ESPNB1AK53 854 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 APBB1O00213 710 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 BMP1P13497 986 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 FLIIQ13045 1269 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 MRPL14Q6P1L8 145 aaKnown RBP10.16□□□□□ -0.78
PTCD3-211ENST00000476215 ERICH6Q7L0X2 663 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 ZNF775Q96BV0 537 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-211ENST00000476215 ZFAND3Q9H8U3 227 aa10.16□□□□□ -0.78
PTCD3-211ENST00000476215 SNRPBP14678 240 aaKnown RBP10.15□□□□□ -0.78
PTCD3-211ENST00000476215 MEIOBQ8N635 442 aa10.15□□□□□ -0.78
PTCD3-211ENST00000476215 NDUFB9Q9Y6M9 179 aa10.15□□□□□ -0.78
PTCD3-211ENST00000476215 FBXO45P0C2W1 286 aa10.14□□□□□ -0.79
PTCD3-211ENST00000476215 NBPF20Q3BBV1 942 aa10.14□□□□□ -0.79
PTCD3-211ENST00000476215 INTS6LQ5JSJ4 861 aaKnown RBP10.14□□□□□ -0.79
PTCD3-211ENST00000476215 PPP1R26Q5T8A7 1209 aaPredicted RBP10.13□□□□□ -0.79
PTCD3-211ENST00000476215 DHX9Q08211 1270 aaKnown RBP10.12□□□□□ -0.79
PTCD3-211ENST00000476215 NR1H3Q13133 447 aa10.12□□□□□ -0.79
PTCD3-211ENST00000476215 LCE2AQ5TA79 106 aaPredicted RBP10.12□□□□□ -0.79
PTCD3-211ENST00000476215 Q6ZVU0 165 aa10.12□□□□□ -0.79
PTCD3-211ENST00000476215 MCM6Q14566 821 aa10.11□□□□□ -0.79
PTCD3-211ENST00000476215 SEPT12Q8IYM1 358 aa10.11□□□□□ -0.79
PTCD3-211ENST00000476215 ZFP42Q96MM3 310 aa10.11□□□□□ -0.79
PTCD3-211ENST00000476215 MCCD1P59942 119 aaPredicted RBP10.1□□□□□ -0.79
PTCD3-211ENST00000476215 DZIP3Q86Y13 1208 aaKnown RBP10.1□□□□□ -0.79
PTCD3-211ENST00000476215 PGPEP1Q9NXJ5 209 aa10.1□□□□□ -0.79
PTCD3-211ENST00000476215 SCARF1Q14162 830 aa10.09□□□□□ -0.79
PTCD3-211ENST00000476215 CCDC125Q86Z20 511 aa10.09□□□□□ -0.79
PTCD3-211ENST00000476215 ZNF592Q92610 1267 aa10.08□□□□□ -0.8
PTCD3-211ENST00000476215 LINC00528Q8N1L1 170 aa10.07□□□□□ -0.8
PTCD3-211ENST00000476215 UBTFP17480 764 aaKnown RBP10.06□□□□□ -0.8
PTCD3-211ENST00000476215 PURBQ96QR8 312 aaKnown RBP10.06□□□□□ -0.8
PTCD3-211ENST00000476215 TSEN34Q9BSV6 310 aaKnown RBP10.06□□□□□ -0.8
PTCD3-211ENST00000476215 NFX1Q12986 1120 aaKnown RBP10.05□□□□□ -0.8
PTCD3-211ENST00000476215 IRF5Q13568 498 aa10.05□□□□□ -0.8
PTCD3-211ENST00000476215 TREML4Q6UXN2 200 aa10.05□□□□□ -0.8
PTCD3-211ENST00000476215 TBC1D2BQ9UPU7 963 aa10.05□□□□□ -0.8
PTCD3-211ENST00000476215 ERVH48-1M5A8F1 160 aa10.04□□□□□ -0.8
PTCD3-211ENST00000476215 LILRA1O75019 489 aa10.04□□□□□ -0.8
PTCD3-211ENST00000476215 ZNF330Q9Y3S2 320 aaPredicted RBP10.04□□□□□ -0.8
PTCD3-211ENST00000476215 NPAS3Q8IXF0 933 aa10.03□□□□□ -0.8
PTCD3-211ENST00000476215 PRM3Q9NNZ6 103 aa10.03□□□□□ -0.8
PTCD3-211ENST00000476215 PCDHB9Q9Y5E1 797 aa10.03□□□□□ -0.8
PTCD3-211ENST00000476215 SOS2Q07890 1332 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-211ENST00000476215 SPINT1O43278 529 aa10.02□□□□□ -0.81
PTCD3-211ENST00000476215 GIGYF1O75420 1035 aaPredicted RBP10.02□□□□□ -0.81
PTCD3-211ENST00000476215 UPP2O95045 317 aa10.02□□□□□ -0.81
PTCD3-211ENST00000476215 CBLBQ13191 982 aa10.02□□□□□ -0.81
PTCD3-211ENST00000476215 ZNF784Q8NCA9 323 aaPredicted RBP10.02□□□□□ -0.81
PTCD3-211ENST00000476215 ZMYND15Q9H091 742 aa10.02□□□□□ -0.81
PTCD3-211ENST00000476215 TERTO14746 1132 aaKnown RBP10.01□□□□□ -0.81
PTCD3-211ENST00000476215 TRIM52Q96A61 297 aa10.01□□□□□ -0.81
PTCD3-211ENST00000476215 CLUAP1Q96AJ1 413 aa10.01□□□□□ -0.81
PTCD3-211ENST00000476215 TMPRSS4Q9NRS4 437 aa10.01□□□□□ -0.81
PTCD3-211ENST00000476215 RAD21O60216 631 aa10□□□□□ -0.81
PTCD3-211ENST00000476215 BMP2P12643 396 aa10□□□□□ -0.81
PTCD3-211ENST00000476215 ADH1AP07327 375 aa9.99□□□□□ -0.81
PTCD3-211ENST00000476215 C6orf118Q5T5N4 469 aa9.99□□□□□ -0.81
PTCD3-211ENST00000476215 RNF20Q5VTR2 975 aa9.99□□□□□ -0.81
PTCD3-211ENST00000476215 KDF1Q8NAX2 398 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-211ENST00000476215 POM121Q96HA1 1249 aa9.99□□□□□ -0.81
PTCD3-211ENST00000476215 NXF1Q9UBU9 619 aaKnown RBP9.99□□□□□ -0.81
PTCD3-211ENST00000476215 WFS1O76024 890 aa9.98□□□□□ -0.81
PTCD3-211ENST00000476215 ADD1P35611 737 aaKnown RBP9.98□□□□□ -0.81
PTCD3-211ENST00000476215 LCE2CQ5TA81 110 aa9.98□□□□□ -0.81
PTCD3-211ENST00000476215 ERVK-9P63128 1117 aa9.97□□□□□ -0.81
PTCD3-211ENST00000476215 GDPD2Q9HCC8 539 aa9.97□□□□□ -0.81
PTCD3-211ENST00000476215 COG6Q9Y2V7 657 aa9.97□□□□□ -0.81
PTCD3-211ENST00000476215 DNMT3LQ9UJW3 386 aa9.96□□□□□ -0.82
PTCD3-211ENST00000476215 H3BM21 787 aa9.95□□□□□ -0.82
PTCD3-211ENST00000476215 RAB15P59190 212 aa9.95□□□□□ -0.82
PTCD3-211ENST00000476215 WASHC4Q2M389 1173 aa9.95□□□□□ -0.82
PTCD3-211ENST00000476215 CEP126Q9P2H0 1117 aa9.95□□□□□ -0.82
PTCD3-211ENST00000476215 A6NJR5 290 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 WIPF1O43516 503 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 ABL2P42684 1182 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 PTGIRP43119 386 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 EIF4G2P78344 907 aaKnown RBP eCLIP9.94□□□□□ -0.82
PTCD3-211ENST00000476215 PHTF2Q8N3S3 785 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 AGBL1Q96MI9 1066 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 CHIC2Q9UKJ5 165 aa9.94□□□□□ -0.82
PTCD3-211ENST00000476215 TTLL8A6PVC2 850 aa9.93□□□□□ -0.82
PTCD3-211ENST00000476215 SOBPA7XYQ1 873 aa9.93□□□□□ -0.82
PTCD3-211ENST00000476215 MAN1A2O60476 641 aa9.93□□□□□ -0.82
PTCD3-211ENST00000476215 TRAK2O60296 914 aa9.92□□□□□ -0.82
PTCD3-211ENST00000476215 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.92□□□□□ -0.82
PTCD3-211ENST00000476215 CC2D2BQ6DHV5 1058 aa9.92□□□□□ -0.82
PTCD3-211ENST00000476215 PROSER2Q86WR7 435 aaPredicted RBP9.92□□□□□ -0.82
PTCD3-211ENST00000476215 CYLDQ9NQC7 956 aa9.92□□□□□ -0.82
PTCD3-211ENST00000476215 VSIG8P0DPA2 414 aa9.91□□□□□ -0.82
PTCD3-211ENST00000476215 RELBQ01201 579 aa9.91□□□□□ -0.82
PTCD3-211ENST00000476215 SUPT5HO00267 1087 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms