RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 ME1P48163 572 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 BICDL1Q6ZP65 573 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 SMARCE1Q969G3 411 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 AKNAQ7Z591 1439 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 CYP46A1Q9Y6A2 500 aa13.03□□□□□ -0.32
VAPB-204ENST00000475243 MRE11P49959 708 aa13.03□□□□□ -0.32
VAPB-204ENST00000475243 BTBD11A6QL63 1104 aa13.03□□□□□ -0.32
VAPB-204ENST00000475243 LETM1O95202 739 aaPredicted RBP13.03□□□□□ -0.32
VAPB-204ENST00000475243 SF3B2Q13435 895 aaKnown RBP13.03□□□□□ -0.32
VAPB-204ENST00000475243 ZSCAN29Q8IWY8 852 aaPredicted RBP13.03□□□□□ -0.32
VAPB-204ENST00000475243 MAP7D2Q96T17 732 aa13.03□□□□□ -0.32
VAPB-204ENST00000475243 CWC27Q6UX04 472 aaKnown RBP13.03□□□□□ -0.32
VAPB-204ENST00000475243 AACSQ86V21 672 aa13.02□□□□□ -0.32
VAPB-204ENST00000475243 AAMPQ13685 434 aa13.02□□□□□ -0.32
VAPB-204ENST00000475243 MIS18AQ9NYP9 233 aa13.02□□□□□ -0.32
VAPB-204ENST00000475243 IBSPP21815 317 aaPredicted RBP13.02□□□□□ -0.33
VAPB-204ENST00000475243 GCC1Q96CN9 775 aa13.02□□□□□ -0.33
VAPB-204ENST00000475243 TANGO6Q9C0B7 1094 aa13.02□□□□□ -0.33
VAPB-204ENST00000475243 NEFHP12036 1026 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 STAC3Q96MF2 364 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 MCM2P49736 904 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 RABEP1Q15276 862 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 CCT4P50991 539 aaKnown RBP13.01□□□□□ -0.33
VAPB-204ENST00000475243 PDCL3Q9H2J4 239 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 IL1RAPL2Q9NP60 686 aa13.01□□□□□ -0.33
VAPB-204ENST00000475243 SRGAP3O43295 1099 aa13□□□□□ -0.33
VAPB-204ENST00000475243 TRIM22Q8IYM9 498 aa13□□□□□ -0.33
VAPB-204ENST00000475243 NACAP1Q9BZK3 213 aa13□□□□□ -0.33
VAPB-204ENST00000475243 KIF21BO75037 1637 aa13□□□□□ -0.33
VAPB-204ENST00000475243 TNMDQ9H2S6 317 aa13□□□□□ -0.33
VAPB-204ENST00000475243 SPG7Q9UQ90 795 aa13□□□□□ -0.33
VAPB-204ENST00000475243 CFTRP13569 1480 aa13□□□□□ -0.33
VAPB-204ENST00000475243 SSBP05455 408 aaKnown RBP eCLIP13□□□□□ -0.33
VAPB-204ENST00000475243 TDO2P48775 406 aa13□□□□□ -0.33
VAPB-204ENST00000475243 ZC3H6P61129 1189 aaKnown RBP13□□□□□ -0.33
VAPB-204ENST00000475243 LARP1BQ659C4 914 aaKnown RBP13□□□□□ -0.33
VAPB-204ENST00000475243 DEF6Q9H4E7 631 aa13□□□□□ -0.33
VAPB-204ENST00000475243 H0YHG0 523 aa12.99□□□□□ -0.33
VAPB-204ENST00000475243 MBD3O95983 291 aa12.99□□□□□ -0.33
VAPB-204ENST00000475243 SRCIN1Q9C0H9 1055 aa12.99□□□□□ -0.33
VAPB-204ENST00000475243 MYO6Q9UM54 1294 aa12.99□□□□□ -0.33
VAPB-204ENST00000475243 RDXP35241 583 aaKnown RBP12.99□□□□□ -0.33
VAPB-204ENST00000475243 RBM10P98175 930 aaKnown RBP12.99□□□□□ -0.33
VAPB-204ENST00000475243 AXDND1Q5T1B0 1012 aaPredicted RBP12.99□□□□□ -0.33
VAPB-204ENST00000475243 ZNHIT6Q9NWK9 470 aaKnown RBP12.99□□□□□ -0.33
VAPB-204ENST00000475243 DHX37Q8IY37 1157 aaKnown RBP12.98□□□□□ -0.33
VAPB-204ENST00000475243 THEMISQ8N1K5 641 aaPredicted RBP12.98□□□□□ -0.33
VAPB-204ENST00000475243 USP5P45974 858 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 SOGA3Q5TF21 947 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 ATF7IPQ6VMQ6 1270 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 PRDM11Q9NQV5 511 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 LRP2BPQ9P2M1 347 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 NOM1Q5C9Z4 860 aaKnown RBP12.98□□□□□ -0.33
VAPB-204ENST00000475243 CHD1LQ86WJ1 897 aa12.98□□□□□ -0.33
VAPB-204ENST00000475243 SEPT11Q9NVA2 429 aaKnown RBP12.98□□□□□ -0.33
VAPB-204ENST00000475243 MATR3P43243 847 aaKnown RBP eCLIP12.97□□□□□ -0.336e-7■■■■□ 22.1
VAPB-204ENST00000475243 ANKRD1Q15327 319 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 PPFIBP1Q86W92 1011 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 JMYQ8N9B5 988 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 JAKMIP1Q96N16 626 aaKnown RBP12.97□□□□□ -0.33
VAPB-204ENST00000475243 RAI14Q9P0K7 980 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 ANKRD62A6NC57 917 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
VAPB-204ENST00000475243 ABCF2Q9UG63 623 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 PDE3AQ14432 1141 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 BRPF3Q9ULD4 1205 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 MPHOSPH10O00566 681 aaKnown RBP12.97□□□□□ -0.33
VAPB-204ENST00000475243 IDH1O75874 414 aaKnown RBP12.97□□□□□ -0.33
VAPB-204ENST00000475243 RAPGEF3O95398 923 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 RTEL1-TNFRSF6BF6WH68 1400 aa12.97□□□□□ -0.33
VAPB-204ENST00000475243 STIM1Q13586 685 aa12.96□□□□□ -0.33
VAPB-204ENST00000475243 BLOC1S2Q6QNY1 142 aa12.96□□□□□ -0.33
VAPB-204ENST00000475243 ERCC4Q92889 916 aaPredicted RBP12.96□□□□□ -0.33
VAPB-204ENST00000475243 SCAPERQ9BY12 1400 aa12.96□□□□□ -0.33
VAPB-204ENST00000475243 CCDC192P0DO97 292 aa12.96□□□□□ -0.33
VAPB-204ENST00000475243 PTCD1O75127 700 aaKnown RBP12.96□□□□□ -0.33
VAPB-204ENST00000475243 CENPHQ9H3R5 247 aa12.96□□□□□ -0.33
VAPB-204ENST00000475243 K7ELQ4 463 aaPredicted RBP12.96□□□□□ -0.34
VAPB-204ENST00000475243 NUTM1Q86Y26 1132 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 DDX11Q96FC9 970 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 SYNJ2O15056 1496 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 DCTN1Q14203 1278 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 UBAC1Q9BSL1 405 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 KRT85P78386 507 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 MVPQ14764 893 aaKnown RBP12.95□□□□□ -0.34
VAPB-204ENST00000475243 PDRG1Q9NUG6 133 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 ZNF76P36508 570 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 CEP126Q9P2H0 1117 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 NBPF8Q3BBV2 869 aa12.95□□□□□ -0.34
VAPB-204ENST00000475243 CCDC181Q5TID7 509 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 CT47B1P0C2W7 299 aaPredicted RBP12.94□□□□□ -0.34
VAPB-204ENST00000475243 AEBP1Q8IUX7 1158 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 SEPT7Q16181 437 aaKnown RBP12.94□□□□□ -0.34
VAPB-204ENST00000475243 ZSCAN25Q6NSZ9 544 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 PNISRQ8TF01 805 aaKnown RBP12.94□□□□□ -0.34
VAPB-204ENST00000475243 THUMPD2Q9BTF0 503 aaKnown RBP12.94□□□□□ -0.34
VAPB-204ENST00000475243 TSPYL1Q9H0U9 437 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 EXOC6BQ9Y2D4 811 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 C9orf84Q5VXU9 1444 aa12.94□□□□□ -0.34
VAPB-204ENST00000475243 PRG4Q92954 1404 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms