RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 NAP1L1P55209 391 aaKnown RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 PCGF5Q86SE9 256 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 SLC39A13Q96H72 371 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 MAP7D2Q96T17 732 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 CFAP65Q6ZU64 1925 aaKnown RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 GOLGA6L3A6NEY3 463 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 HOXA2O43364 376 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 ABCD1P33897 745 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 C11orf91Q3C1V1 193 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 IL17RAQ96F46 866 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 LNPKQ9C0E8 428 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 DNAJC5BQ9UF47 199 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 ZNF232Q9UNY5 417 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 IQSEC3Q9UPP2 1182 aaPredicted RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 SCINQ9Y6U3 715 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 TBC1D10BQ4KMP7 808 aaPredicted RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 MIER1Q8N108 512 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 CEP63Q96MT8 703 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 DUSP9Q99956 384 aaKnown RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 G3BP2Q9UN86 482 aaKnown RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 ERICH4A6NGS2 130 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 TNNT2P45379 298 aaPredicted RBP4.29□□□□□ -1.72
UBR3-208ENST00000474426 BIRC2Q13490 618 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 DCAF11Q8TEB1 546 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 TAF4BQ92750 862 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 PNNQ9H307 717 aaKnown RBP4.29□□□□□ -1.72
UBR3-208ENST00000474426 TRPC1P48995 793 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 ZSCAN30Q86W11 494 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 DONSONQ9NYP3 566 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 SLC45A1Q9Y2W3 748 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 BICDL2A1A5D9 508 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 IPO7O95373 1038 aaKnown RBP4.29□□□□□ -1.72
UBR3-208ENST00000474426 IGBP1P78318 339 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 PSMD2Q13200 908 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 GSE1Q14687 1217 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 NT5DC4Q86YG4 428 aa4.29□□□□□ -1.72
UBR3-208ENST00000474426 ISY1Q9ULR0 285 aaKnown RBP4.29□□□□□ -1.72
UBR3-208ENST00000474426 PDE4DQ08499 809 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 CCDC15Q0P6D6 951 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 PTK7Q13308 1070 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 TCEAL1Q15170 157 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 TTC39BQ5VTQ0 682 aaPredicted RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 KANK3Q6NY19 840 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 PHC3Q8NDX5 983 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 NCAPGQ9BPX3 1015 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 SUDS3Q9H7L9 328 aaPredicted RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 EFCC1Q9HA90 598 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 SMC4Q9NTJ3 1288 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 TLDC2A0PJX2 215 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 HMGN5P82970 282 aaKnown RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 PLEKHG6Q3KR16 790 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 EFCAB2Q5VUJ9 269 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 ZNF396Q96N95 335 aaPredicted RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 CDC5LQ99459 802 aaKnown RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 PIF1Q9H611 641 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 IFT122Q9HBG6 1241 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 ZBTB47Q9UFB7 747 aaPredicted RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 TBX22Q9Y458 520 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 LDHCP07864 332 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 KCNA2P16389 499 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 ABL2P42684 1182 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 ANKRD13BQ86YJ7 626 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 PDILTQ8N807 584 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 AK7Q96M32 723 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 LARP6Q9BRS8 491 aaKnown RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 TBC1D2Q9BYX2 928 aa4.28□□□□□ -1.72
UBR3-208ENST00000474426 CGNQ9P2M7 1197 aaKnown RBP4.28□□□□□ -1.72
UBR3-208ENST00000474426 RRM1P23921 792 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 CASQ1P31415 396 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 TSNAXIP1Q2TAA8 658 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 DNAJC21Q5F1R6 531 aaKnown RBP4.27□□□□□ -1.73
UBR3-208ENST00000474426 AGAP3Q96P47 875 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 EPAS1Q99814 870 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 CDC37L1Q7L3B6 337 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 IQCF2Q8IXL9 164 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 RNF25Q96BH1 459 aaPredicted RBP4.27□□□□□ -1.73
UBR3-208ENST00000474426 FMNL2Q96PY5 1086 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 ALDH8A1Q9H2A2 487 aaPredicted RBP4.27□□□□□ -1.73
UBR3-208ENST00000474426 ECEL1O95672 775 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 RASA3Q14644 834 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 AMOTQ4VCS5 1084 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 SWT1Q5T5J6 900 aaKnown RBP4.27□□□□□ -1.73
UBR3-208ENST00000474426 CC2D1AQ6P1N0 951 aaPredicted RBP4.27□□□□□ -1.73
UBR3-208ENST00000474426 SVIPQ8NHG7 77 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 SPOCK2Q92563 424 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 SFMBT1Q9UHJ3 866 aa4.27□□□□□ -1.73
UBR3-208ENST00000474426 ANKRD33BA6NCL7 494 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 TULP2O00295 520 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 TRIM66O15016 1216 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 CLASRPQ8N2M8 674 aaKnown RBP4.26□□□□□ -1.73
UBR3-208ENST00000474426 JMYQ8N9B5 988 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 DDX27Q96GQ7 796 aaKnown RBP4.26□□□□□ -1.73
UBR3-208ENST00000474426 TMEM63CQ9P1W3 806 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 RABL2BQ9UNT1 228 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 TRIM64CA6NLI5 447 aa4.26□□□□□ -1.73
UBR3-208ENST00000474426 CLK1P49759 484 aaKnown RBP4.26□□□□□ -1.73
UBR3-208ENST00000474426 XPCQ01831 940 aaPredicted RBP4.26□□□□□ -1.73
UBR3-208ENST00000474426 KCTD2Q14681 263 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms