RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MYOM1P52179 1685 aa25.16■■□□□ 1.62
UPF3A-203ENST00000474056 CCDC125Q86Z20 511 aa25.15■■□□□ 1.62
UPF3A-203ENST00000474056 AXIN2Q9Y2T1 843 aa25.15■■□□□ 1.62
UPF3A-203ENST00000474056 CRB1P82279 1406 aa25.14■■□□□ 1.62
UPF3A-203ENST00000474056 OVOS2A0A0J9YW53 1432 aa25.13■■□□□ 1.61
UPF3A-203ENST00000474056 OVOS2Q6IE36 1432 aa25.13■■□□□ 1.61
UPF3A-203ENST00000474056 PARP4Q9UKK3 1724 aaKnown RBP25.13■■□□□ 1.61
UPF3A-203ENST00000474056 BARGINQ6ZT62 677 aa25.13■■□□□ 1.61
UPF3A-203ENST00000474056 ABCC6O95255 1503 aa25.12■■□□□ 1.61
UPF3A-203ENST00000474056 FAM182BQ5T319 152 aa25.12■■□□□ 1.61
UPF3A-203ENST00000474056 TCP11L2Q8N4U5 519 aa25.12■■□□□ 1.61
UPF3A-203ENST00000474056 ANKRD36BQ8N2N9 1353 aa25.12■■□□□ 1.61
UPF3A-203ENST00000474056 RGPD1P0DJD0 1748 aa25.11■■□□□ 1.61
UPF3A-203ENST00000474056 THRAP3Q9Y2W1 955 aaKnown RBP25.09■■□□□ 1.61
UPF3A-203ENST00000474056 WDR17Q8IZU2 1322 aa25.09■■□□□ 1.61
UPF3A-203ENST00000474056 KIF20BQ96Q89 1820 aa25.08■■□□□ 1.61
UPF3A-203ENST00000474056 TNS1Q9HBL0 1735 aaKnown RBP25.08■■□□□ 1.61
UPF3A-203ENST00000474056 TOM1L2Q6ZVM7 507 aa25.07■■□□□ 1.6
UPF3A-203ENST00000474056 LRRC37A3O60309 1634 aa25.07■■□□□ 1.6
UPF3A-203ENST00000474056 CDCA8Q53HL2 280 aa25.06■■□□□ 1.6
UPF3A-203ENST00000474056 DEFB132Q7Z7B7 95 aa25.06■■□□□ 1.6
UPF3A-203ENST00000474056 SF3B2Q13435 895 aaKnown RBP25.05■■□□□ 1.6
UPF3A-203ENST00000474056 CSB-PGBD3P0DP91 1061 aa25.02■■□□□ 1.6
UPF3A-203ENST00000474056 PDE3BQ13370 1112 aa25.01■■□□□ 1.59
UPF3A-203ENST00000474056 COG3Q96JB2 828 aa25.01■■□□□ 1.59
UPF3A-203ENST00000474056 HSPA5P11021 654 aaKnown RBP24.99■■□□□ 1.59
UPF3A-203ENST00000474056 EIF4G2P78344 907 aaKnown RBP eCLIP24.99■■□□□ 1.59
UPF3A-203ENST00000474056 SBF2Q86WG5 1849 aa24.99■■□□□ 1.59
UPF3A-203ENST00000474056 CARD10Q9BWT7 1032 aa24.99■■□□□ 1.59
UPF3A-203ENST00000474056 PEAK1Q9H792 1746 aa24.99■■□□□ 1.59
UPF3A-203ENST00000474056 ERBB3P21860 1342 aa24.98■■□□□ 1.59
UPF3A-203ENST00000474056 FAM196AQ6ZSG2 479 aa24.98■■□□□ 1.59
UPF3A-203ENST00000474056 DISP2A7MBM2 1401 aa24.96■■□□□ 1.59
UPF3A-203ENST00000474056 FYB1O15117 783 aa24.96■■□□□ 1.59
UPF3A-203ENST00000474056 FBLN1P23142 703 aa24.96■■□□□ 1.59
UPF3A-203ENST00000474056 BAG6P46379 1132 aa24.96■■□□□ 1.59
UPF3A-203ENST00000474056 GGNBP2Q9H3C7 697 aa24.96■■□□□ 1.59
UPF3A-203ENST00000474056 FAM208AQ9UK61 1670 aaKnown RBP24.96■■□□□ 1.59
UPF3A-203ENST00000474056 CCDC7Q96M83 1385 aa24.95■■□□□ 1.59
UPF3A-203ENST00000474056 RGPD2P0DJD1 1756 aa24.95■■□□□ 1.58
UPF3A-203ENST00000474056 NSD3Q9BZ95 1437 aa24.95■■□□□ 1.58
UPF3A-203ENST00000474056 TRIM37O94972 964 aa24.94■■□□□ 1.58
UPF3A-203ENST00000474056 DDB1Q16531 1140 aa24.94■■□□□ 1.58
UPF3A-203ENST00000474056 ANKRD24Q8TF21 1146 aa24.94■■□□□ 1.58
UPF3A-203ENST00000474056 CARD14Q9BXL6 1004 aa24.94■■□□□ 1.58
UPF3A-203ENST00000474056 POLR3GLQ9BT43 218 aa24.93■■□□□ 1.58
UPF3A-203ENST00000474056 MAP3K19Q56UN5 1328 aa24.92■■□□□ 1.58
UPF3A-203ENST00000474056 IP6K1Q92551 441 aa24.92■■□□□ 1.58
UPF3A-203ENST00000474056 OVOS2A0A0G2JMS6 1433 aa24.92■■□□□ 1.58
UPF3A-203ENST00000474056 EN1Q05925 392 aaPredicted RBP24.91■■□□□ 1.58
UPF3A-203ENST00000474056 CDCA7Q9BWT1 371 aaPredicted RBP24.91■■□□□ 1.58
UPF3A-203ENST00000474056 NLRP2Q9NX02 1062 aa24.91■■□□□ 1.58
UPF3A-203ENST00000474056 HOXC9P31274 260 aa24.88■■□□□ 1.57
UPF3A-203ENST00000474056 RRS1Q15050 365 aaKnown RBP24.88■■□□□ 1.57
UPF3A-203ENST00000474056 TNS2Q63HR2 1409 aa24.87■■□□□ 1.57
UPF3A-203ENST00000474056 ANKRD26Q9UPS8 1709 aa24.87■■□□□ 1.57
UPF3A-203ENST00000474056 LTV1Q96GA3 475 aaPredicted RBP24.87■■□□□ 1.57
UPF3A-203ENST00000474056 RREB1Q92766 1687 aa24.87■■□□□ 1.57
UPF3A-203ENST00000474056 RTL1A6NKG5 1358 aa24.86■■□□□ 1.57
UPF3A-203ENST00000474056 AMPHP49418 695 aa24.86■■□□□ 1.57
UPF3A-203ENST00000474056 MARCH10Q8NA82 808 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-203ENST00000474056 MAP2P11137 1827 aaKnown RBP24.86■■□□□ 1.57
UPF3A-203ENST00000474056 EZH2Q15910 746 aaKnown RBP24.85■■□□□ 1.57
UPF3A-203ENST00000474056 APBA3O96018 575 aa24.84■■□□□ 1.57
UPF3A-203ENST00000474056 KAT6BQ8WYB5 2073 aa24.84■■□□□ 1.57
UPF3A-203ENST00000474056 EXOC5O00471 708 aa24.83■■□□□ 1.57
UPF3A-203ENST00000474056 NUP188Q5SRE5 1749 aa24.83■■□□□ 1.57
UPF3A-203ENST00000474056 C11orf95C9JLR9 678 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-203ENST00000474056 IL2RBP14784 551 aa24.82■■□□□ 1.56
UPF3A-203ENST00000474056 CAMKK2Q96RR4 588 aa24.82■■□□□ 1.56
UPF3A-203ENST00000474056 BCL9O00512 1426 aa24.81■■□□□ 1.56
UPF3A-203ENST00000474056 CGNL1Q0VF96 1302 aa24.81■■□□□ 1.56
UPF3A-203ENST00000474056 RGPD3A6NKT7 1758 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-203ENST00000474056 RGPD4Q7Z3J3 1758 aa24.8■■□□□ 1.56
UPF3A-203ENST00000474056 SHANK3Q9BYB0 1731 aa24.78■■□□□ 1.56
UPF3A-203ENST00000474056 FLT4P35916 1363 aa24.78■■□□□ 1.56
UPF3A-203ENST00000474056 PARD3Q8TEW0 1356 aa24.78■■□□□ 1.56
UPF3A-203ENST00000474056 PTF1AQ7RTS3 328 aa24.77■■□□□ 1.56
UPF3A-203ENST00000474056 PANK3Q9H999 370 aa24.77■■□□□ 1.56
UPF3A-203ENST00000474056 NHSQ6T4R5 1651 aa24.77■■□□□ 1.56
UPF3A-203ENST00000474056 EMILIN1Q9Y6C2 1016 aa24.76■■□□□ 1.55
UPF3A-203ENST00000474056 HSP90AB2PQ58FF8 381 aa24.75■■□□□ 1.55
UPF3A-203ENST00000474056 INSRP06213 1382 aa24.75■■□□□ 1.55
UPF3A-203ENST00000474056 KIF24Q5T7B8 1368 aa24.75■■□□□ 1.55
UPF3A-203ENST00000474056 SMG6Q86US8 1419 aaKnown RBP24.75■■□□□ 1.55
UPF3A-203ENST00000474056 PSDA5PKW4 1024 aaPredicted RBP24.74■■□□□ 1.55
UPF3A-203ENST00000474056 BCL11BQ9C0K0 894 aaPredicted RBP24.74■■□□□ 1.55
UPF3A-203ENST00000474056 MEGF6O75095 1541 aa24.73■■□□□ 1.55
UPF3A-203ENST00000474056 NBPF6Q5VWK0 638 aa24.72■■□□□ 1.55
UPF3A-203ENST00000474056 NBPF4Q96M43 638 aa24.72■■□□□ 1.55
UPF3A-203ENST00000474056 KIF7Q2M1P5 1343 aa24.71■■□□□ 1.55
UPF3A-203ENST00000474056 USHBP1Q8N6Y0 703 aa24.71■■□□□ 1.55
UPF3A-203ENST00000474056 BTAF1O14981 1849 aa24.7■■□□□ 1.55
UPF3A-203ENST00000474056 ACSBG1Q96GR2 724 aa24.69■■□□□ 1.54
UPF3A-203ENST00000474056 SRCAPQ6ZRS2 3230 aa24.68■■□□□ 1.54
UPF3A-203ENST00000474056 PLSCR1O15162 318 aa24.68■■□□□ 1.54
UPF3A-203ENST00000474056 KCNQ2O43526 872 aa24.68■■□□□ 1.54
UPF3A-203ENST00000474056 R3HDM1Q15032 1099 aaKnown RBP24.68■■□□□ 1.54
UPF3A-203ENST00000474056 DOT1LQ8TEK3 1739 aa24.68■■□□□ 1.54
UPF3A-203ENST00000474056 PPM1GO15355 546 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms