RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 TOM1L2Q6ZVM7 507 aa19.25■□□□□ 0.67
CHD3-209ENST00000473376 CARD11Q9BXL7 1154 aa19.25■□□□□ 0.67
CHD3-209ENST00000473376 COL18A1P39060 1754 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 PSDA5PKW4 1024 aaPredicted RBP19.24■□□□□ 0.67
CHD3-209ENST00000473376 PLSCR1O15162 318 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 DDB1Q16531 1140 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 CARD10Q9BWT7 1032 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 AXIN2Q9Y2T1 843 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 AKAP12Q02952 1782 aa19.24■□□□□ 0.67
CHD3-209ENST00000473376 NBPF14Q5TI25 921 aa19.23■□□□□ 0.67
CHD3-209ENST00000473376 R3HDM1Q15032 1099 aaKnown RBP19.22■□□□□ 0.67
CHD3-209ENST00000473376 TONSLQ96HA7 1378 aa19.21■□□□□ 0.67
CHD3-209ENST00000473376 CCDC7Q96M83 1385 aa19.21■□□□□ 0.67
CHD3-209ENST00000473376 NFAT5O94916 1531 aa19.2■□□□□ 0.66
CHD3-209ENST00000473376 NINLQ9Y2I6 1382 aa19.2■□□□□ 0.66
CHD3-209ENST00000473376 HDGFL2Q7Z4V5 671 aaPredicted RBP19.2■□□□□ 0.66
CHD3-209ENST00000473376 BCL11BQ9C0K0 894 aaPredicted RBP19.2■□□□□ 0.66
CHD3-209ENST00000473376 TERF2IPQ9NYB0 399 aa19.19■□□□□ 0.66
CHD3-209ENST00000473376 PEAK1Q9H792 1746 aa19.19■□□□□ 0.66
CHD3-209ENST00000473376 USP54Q70EL1 1684 aa19.18■□□□□ 0.66
CHD3-209ENST00000473376 RREB1Q92766 1687 aa19.18■□□□□ 0.66
CHD3-209ENST00000473376 CD163L1Q9NR16 1453 aa19.18■□□□□ 0.66
CHD3-209ENST00000473376 EDC4Q6P2E9 1401 aaKnown RBP19.17■□□□□ 0.66
CHD3-209ENST00000473376 MON2Q7Z3U7 1717 aa19.17■□□□□ 0.66
CHD3-209ENST00000473376 ZBTB7CA1YPR0 619 aa19.17■□□□□ 0.66
CHD3-209ENST00000473376 RGPD3A6NKT7 1758 aaPredicted RBP19.16■□□□□ 0.66
CHD3-209ENST00000473376 RGPD4Q7Z3J3 1758 aa19.16■□□□□ 0.66
CHD3-209ENST00000473376 LRRC37A3O60309 1634 aa19.16■□□□□ 0.66
CHD3-209ENST00000473376 EXOC5O00471 708 aa19.15■□□□□ 0.66
CHD3-209ENST00000473376 CSB-PGBD3P0DP91 1061 aa19.15■□□□□ 0.66
CHD3-209ENST00000473376 MARCH10Q8NA82 808 aaPredicted RBP19.14■□□□□ 0.65
CHD3-209ENST00000473376 SLC12A5Q9H2X9 1139 aa19.13■□□□□ 0.65
CHD3-209ENST00000473376 ERBB3P21860 1342 aa19.13■□□□□ 0.65
CHD3-209ENST00000473376 NUP188Q5SRE5 1749 aa19.12■□□□□ 0.65
CHD3-209ENST00000473376 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.12■□□□□ 0.65
CHD3-209ENST00000473376 TMC1Q8TDI8 760 aa19.12■□□□□ 0.65
CHD3-209ENST00000473376 TESK2Q96S53 571 aa19.12■□□□□ 0.65
CHD3-209ENST00000473376 NME9Q86XW9 330 aa19.11■□□□□ 0.65
CHD3-209ENST00000473376 A0A1W2PP64 1363 aa19.1■□□□□ 0.65
CHD3-209ENST00000473376 WNK3Q9BYP7 1800 aa19.1■□□□□ 0.65
CHD3-209ENST00000473376 TNS2Q63HR2 1409 aa19.09■□□□□ 0.65
CHD3-209ENST00000473376 SOX12O15370 315 aa19.09■□□□□ 0.65
CHD3-209ENST00000473376 SBF2Q86WG5 1849 aa19.09■□□□□ 0.65
CHD3-209ENST00000473376 TRIM26Q12899 539 aaPredicted RBP19.08■□□□□ 0.64
CHD3-209ENST00000473376 SPON1Q9HCB6 807 aa19.08■□□□□ 0.64
CHD3-209ENST00000473376 ST20-MTHFSA0A0A6YYL1 179 aa19.07■□□□□ 0.64
CHD3-209ENST00000473376 KCNQ2O43526 872 aa19.07■□□□□ 0.64
CHD3-209ENST00000473376 IL2RBP14784 551 aa19.07■□□□□ 0.64
CHD3-209ENST00000473376 PROM2Q8N271 834 aa19.06■□□□□ 0.64
CHD3-209ENST00000473376 IP6K1Q92551 441 aa19.06■□□□□ 0.64
CHD3-209ENST00000473376 ANKRD24Q8TF21 1146 aa19.05■□□□□ 0.64
CHD3-209ENST00000473376 NLRP2Q9NX02 1062 aa19.05■□□□□ 0.64
CHD3-209ENST00000473376 TIMELESSQ9UNS1 1208 aa19.05■□□□□ 0.64
CHD3-209ENST00000473376 RGPD5Q99666 1765 aa19.05■□□□□ 0.64
CHD3-209ENST00000473376 CDCA8Q53HL2 280 aa19.03■□□□□ 0.64
CHD3-209ENST00000473376 COG3Q96JB2 828 aa19.03■□□□□ 0.64
CHD3-209ENST00000473376 ANKRD36BQ8N2N9 1353 aa19.03■□□□□ 0.64
CHD3-209ENST00000473376 TXNRD1Q16881 649 aa19.02■□□□□ 0.64
CHD3-209ENST00000473376 PTF1AQ7RTS3 328 aa19.02■□□□□ 0.64
CHD3-209ENST00000473376 TMF1P82094 1093 aa19.01■□□□□ 0.63
CHD3-209ENST00000473376 LTN1O94822 1766 aa19■□□□□ 0.63
CHD3-209ENST00000473376 ANO8Q9HCE9 1232 aaPredicted RBP18.99■□□□□ 0.63
CHD3-209ENST00000473376 STK32BQ9NY57 414 aa18.99■□□□□ 0.63
CHD3-209ENST00000473376 CLSPNQ9HAW4 1339 aa18.99■□□□□ 0.63
CHD3-209ENST00000473376 RTL1A6NKG5 1358 aa18.98■□□□□ 0.63
CHD3-209ENST00000473376 SLC15A2Q16348 729 aa18.98■□□□□ 0.63
CHD3-209ENST00000473376 FAM208AQ9UK61 1670 aaKnown RBP18.98■□□□□ 0.63
CHD3-209ENST00000473376 PPP1R1BQ9UD71 204 aaPredicted RBP18.97■□□□□ 0.63
CHD3-209ENST00000473376 NHSQ6T4R5 1651 aa18.97■□□□□ 0.63
CHD3-209ENST00000473376 MAP3K19Q56UN5 1328 aa18.97■□□□□ 0.63
CHD3-209ENST00000473376 USP47Q96K76 1375 aa18.96■□□□□ 0.63
CHD3-209ENST00000473376 HOXC9P31274 260 aa18.96■□□□□ 0.63
CHD3-209ENST00000473376 CGNL1Q0VF96 1302 aa18.96■□□□□ 0.63
CHD3-209ENST00000473376 KIF24Q5T7B8 1368 aa18.95■□□□□ 0.62
CHD3-209ENST00000473376 CASZ1Q86V15 1759 aa18.95■□□□□ 0.62
CHD3-209ENST00000473376 DCAF8L1A6NGE4 600 aa18.94■□□□□ 0.62
CHD3-209ENST00000473376 FYB1O15117 783 aa18.94■□□□□ 0.62
CHD3-209ENST00000473376 AMPHP49418 695 aa18.94■□□□□ 0.62
CHD3-209ENST00000473376 HMGB2P26583 209 aaKnown RBP18.93■□□□□ 0.62
CHD3-209ENST00000473376 SLC27A3Q5K4L6 730 aa18.93■□□□□ 0.62
CHD3-209ENST00000473376 MTFR1LQ9H019 292 aa18.92■□□□□ 0.62
CHD3-209ENST00000473376 PTGER2P43116 358 aa18.91■□□□□ 0.62
CHD3-209ENST00000473376 ACSBG1Q96GR2 724 aa18.9■□□□□ 0.62
CHD3-209ENST00000473376 ZCRB1Q8TBF4 217 aaKnown RBP18.89■□□□□ 0.61
CHD3-209ENST00000473376 SLC16A10Q8TF71 515 aa18.88■□□□□ 0.61
CHD3-209ENST00000473376 INSRP06213 1382 aa18.88■□□□□ 0.61
CHD3-209ENST00000473376 SMG6Q86US8 1419 aaKnown RBP18.88■□□□□ 0.61
CHD3-209ENST00000473376 PAPPAQ13219 1627 aa18.88■□□□□ 0.61
CHD3-209ENST00000473376 DDX54Q8TDD1 881 aaKnown RBP18.87■□□□□ 0.61
CHD3-209ENST00000473376 LTV1Q96GA3 475 aaPredicted RBP18.87■□□□□ 0.61
CHD3-209ENST00000473376 SGIP1Q9BQI5 828 aa18.87■□□□□ 0.61
CHD3-209ENST00000473376 PDGFDQ9GZP0 370 aaPredicted RBP18.87■□□□□ 0.61
CHD3-209ENST00000473376 ZBTB7AO95365 584 aa18.86■□□□□ 0.61
CHD3-209ENST00000473376 GGNBP2Q9H3C7 697 aa18.86■□□□□ 0.61
CHD3-209ENST00000473376 FLT4P35916 1363 aa18.85■□□□□ 0.61
CHD3-209ENST00000473376 MAP3K5Q99683 1374 aa18.85■□□□□ 0.61
CHD3-209ENST00000473376 NBPF6Q5VWK0 638 aa18.85■□□□□ 0.61
CHD3-209ENST00000473376 NBPF4Q96M43 638 aa18.85■□□□□ 0.61
CHD3-209ENST00000473376 BTAF1O14981 1849 aa18.85■□□□□ 0.61
CHD3-209ENST00000473376 RAPGEF4Q8WZA2 1011 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms