RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 NUDT16Q96DE0 195 aaKnown RBP13.28□□□□□ -0.28
CPSF4-211ENST00000471455 HRCP23327 699 aa13.27□□□□□ -0.29
CPSF4-211ENST00000471455 DCAF8Q5TAQ9 597 aa13.27□□□□□ -0.29
CPSF4-211ENST00000471455 PARD3Q8TEW0 1356 aa13.27□□□□□ -0.29
CPSF4-211ENST00000471455 KIAA0232Q92628 1395 aa13.27□□□□□ -0.29
CPSF4-211ENST00000471455 PSDA5PKW4 1024 aaPredicted RBP13.26□□□□□ -0.29
CPSF4-211ENST00000471455 SPATA31A1Q5TZJ5 1347 aa13.26□□□□□ -0.29
CPSF4-211ENST00000471455 FAM196AQ6ZSG2 479 aa13.26□□□□□ -0.29
CPSF4-211ENST00000471455 PHRF1Q9P1Y6 1649 aaKnown RBP13.26□□□□□ -0.29
CPSF4-211ENST00000471455 POLR3AO14802 1390 aaPredicted RBP13.25□□□□□ -0.29
CPSF4-211ENST00000471455 EN1Q05925 392 aaPredicted RBP13.25□□□□□ -0.29
CPSF4-211ENST00000471455 STRN4Q9NRL3 753 aa13.25□□□□□ -0.29
CPSF4-211ENST00000471455 TRPC6Q9Y210 931 aa13.25□□□□□ -0.29
CPSF4-211ENST00000471455 TNS1Q9HBL0 1735 aaKnown RBP13.25□□□□□ -0.29
CPSF4-211ENST00000471455 EVA1CP58658 441 aa13.24□□□□□ -0.29
CPSF4-211ENST00000471455 CDK19Q9BWU1 502 aa13.24□□□□□ -0.29
CPSF4-211ENST00000471455 KIAA1210Q9ULL0 1709 aa13.24□□□□□ -0.29
CPSF4-211ENST00000471455 TOPAZ1Q8N9V7 1692 aa13.24□□□□□ -0.29
CPSF4-211ENST00000471455 PDE3BQ13370 1112 aa13.23□□□□□ -0.29
CPSF4-211ENST00000471455 CHRNA2Q15822 529 aa13.23□□□□□ -0.29
CPSF4-211ENST00000471455 SSH2Q76I76 1423 aa13.22□□□□□ -0.29
CPSF4-211ENST00000471455 ACEP12821 1306 aa13.22□□□□□ -0.29
CPSF4-211ENST00000471455 PLEKHG3A1L390 1219 aa13.22□□□□□ -0.29
CPSF4-211ENST00000471455 C11orf95C9JLR9 678 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-211ENST00000471455 ZC3H6P61129 1189 aaKnown RBP13.22□□□□□ -0.29
CPSF4-211ENST00000471455 R3HDM1Q15032 1099 aaKnown RBP13.22□□□□□ -0.29
CPSF4-211ENST00000471455 FAM182BQ5T319 152 aa13.22□□□□□ -0.29
CPSF4-211ENST00000471455 BARGINQ6ZT62 677 aa13.22□□□□□ -0.29
CPSF4-211ENST00000471455 BRD4O60885 1362 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-211ENST00000471455 CPDO75976 1380 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 NRKQ7Z2Y5 1582 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 PYGBP11216 843 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 GSE1Q14687 1217 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 NBPF8Q3BBV2 869 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 ABTB2Q8N961 1025 aa13.21□□□□□ -0.29
CPSF4-211ENST00000471455 TRIM37O94972 964 aa13.2□□□□□ -0.3
CPSF4-211ENST00000471455 APBA3O96018 575 aa13.2□□□□□ -0.3
CPSF4-211ENST00000471455 NUTM2GQ5VZR2 741 aa13.2□□□□□ -0.3
CPSF4-211ENST00000471455 TCP11L2Q8N4U5 519 aa13.2□□□□□ -0.3
CPSF4-211ENST00000471455 USP35Q9P2H5 1018 aa13.2□□□□□ -0.3
CPSF4-211ENST00000471455 THRAP3Q9Y2W1 955 aaKnown RBP13.2□□□□□ -0.3
CPSF4-211ENST00000471455 USP19O94966 1318 aa13.19□□□□□ -0.3
CPSF4-211ENST00000471455 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
CPSF4-211ENST00000471455 EZH2Q15910 746 aaKnown RBP13.19□□□□□ -0.3
CPSF4-211ENST00000471455 NBPF14Q5TI25 921 aa13.19□□□□□ -0.3
CPSF4-211ENST00000471455 NLRP13Q86W25 1043 aa13.19□□□□□ -0.3
CPSF4-211ENST00000471455 IFNL1Q8IU54 200 aa13.18□□□□□ -0.3
CPSF4-211ENST00000471455 CAMKK2Q96RR4 588 aa13.18□□□□□ -0.3
CPSF4-211ENST00000471455 PPIP5K1Q6PFW1 1433 aa13.18□□□□□ -0.3
CPSF4-211ENST00000471455 CENPJQ9HC77 1338 aaPredicted RBP13.17□□□□□ -0.3
CPSF4-211ENST00000471455 SGIP1Q9BQI5 828 aa13.17□□□□□ -0.3
CPSF4-211ENST00000471455 PCDHB13Q9Y5F0 798 aa13.17□□□□□ -0.3
CPSF4-211ENST00000471455 LMO7Q8WWI1 1683 aa13.17□□□□□ -0.3
CPSF4-211ENST00000471455 CAMTA1Q9Y6Y1 1673 aa13.16□□□□□ -0.3
CPSF4-211ENST00000471455 LARP1Q6PKG0 1096 aaKnown RBP13.16□□□□□ -0.3
CPSF4-211ENST00000471455 RREB1Q92766 1687 aa13.15□□□□□ -0.3
CPSF4-211ENST00000471455 GCP02774 474 aa13.15□□□□□ -0.3
CPSF4-211ENST00000471455 CIZ1Q9ULV3 898 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-211ENST00000471455 COL5A2P05997 1499 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-211ENST00000471455 OVOS2A0A0G2JMS6 1433 aa13.14□□□□□ -0.31
CPSF4-211ENST00000471455 OVOS2A0A0J9YW53 1432 aa13.14□□□□□ -0.31
CPSF4-211ENST00000471455 CRB1P82279 1406 aa13.14□□□□□ -0.31
CPSF4-211ENST00000471455 OVOS2Q6IE36 1432 aa13.14□□□□□ -0.31
CPSF4-211ENST00000471455 PARP4Q9UKK3 1724 aaKnown RBP13.14□□□□□ -0.31
CPSF4-211ENST00000471455 CHRM1P11229 460 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-211ENST00000471455 QRICH2Q9H0J4 1663 aa13.13□□□□□ -0.31
CPSF4-211ENST00000471455 ASTLQ6HA08 431 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-211ENST00000471455 PELP1Q8IZL8 1130 aaKnown RBP13.13□□□□□ -0.31
CPSF4-211ENST00000471455 DCBLD2Q96PD2 775 aa13.13□□□□□ -0.31
CPSF4-211ENST00000471455 NUP188Q5SRE5 1749 aa13.13□□□□□ -0.31
CPSF4-211ENST00000471455 USP6P35125 1406 aa13.13□□□□□ -0.31
CPSF4-211ENST00000471455 AATKQ6ZMQ8 1374 aa13.12□□□□□ -0.31
CPSF4-211ENST00000471455 ATMINO43313 823 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-211ENST00000471455 CABP2Q9NPB3 220 aa13.12□□□□□ -0.31
CPSF4-211ENST00000471455 BMP2KQ9NSY1 1161 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-211ENST00000471455 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 NLRP6P59044 892 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 NBPF1Q3BBV0 1214 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 CDCA7Q9BWT1 371 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-211ENST00000471455 SLIT3O75094 1523 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 RGPD3A6NKT7 1758 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-211ENST00000471455 RGPD4Q7Z3J3 1758 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 EVC2Q86UK5 1308 aa13.11□□□□□ -0.31
CPSF4-211ENST00000471455 SPON1Q9HCB6 807 aa13.1□□□□□ -0.31
CPSF4-211ENST00000471455 PPP1R1BQ9UD71 204 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-211ENST00000471455 DDB1Q16531 1140 aa13.09□□□□□ -0.31
CPSF4-211ENST00000471455 TOM1L2Q6ZVM7 507 aa13.09□□□□□ -0.31
CPSF4-211ENST00000471455 CABP1Q9NZU7 370 aa13.09□□□□□ -0.31
CPSF4-211ENST00000471455 PCDHB8Q9UN66 801 aa13.09□□□□□ -0.31
CPSF4-211ENST00000471455 NINLQ9Y2I6 1382 aa13.08□□□□□ -0.31
CPSF4-211ENST00000471455 TIE1P35590 1138 aa13.08□□□□□ -0.32
CPSF4-211ENST00000471455 KCNH5Q8NCM2 988 aa13.08□□□□□ -0.32
CPSF4-211ENST00000471455 LRRC37A3O60309 1634 aa13.08□□□□□ -0.32
CPSF4-211ENST00000471455 TRPM1Q7Z4N2 1603 aa13.08□□□□□ -0.32
CPSF4-211ENST00000471455 CPSF1Q10570 1443 aaKnown RBP13.07□□□□□ -0.32
CPSF4-211ENST00000471455 ATN1P54259 1190 aaPredicted RBP13.07□□□□□ -0.32
CPSF4-211ENST00000471455 WDR17Q8IZU2 1322 aa13.07□□□□□ -0.32
CPSF4-211ENST00000471455 PIK3C2AO00443 1686 aa13.06□□□□□ -0.32
CPSF4-211ENST00000471455 PEAK1Q9H792 1746 aa13.06□□□□□ -0.32
CPSF4-211ENST00000471455 PLSCR1O15162 318 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms