RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CHRNA2Q15822 529 aa13.4□□□□□ -0.26
SF3A1-207ENST00000471342 RGPD1P0DJD0 1748 aa13.39□□□□□ -0.27
SF3A1-207ENST00000471342 RTL1A6NKG5 1358 aa13.39□□□□□ -0.27
SF3A1-207ENST00000471342 MAP2P11137 1827 aaKnown RBP13.39□□□□□ -0.27
SF3A1-207ENST00000471342 SLIT2O94813 1529 aa13.39□□□□□ -0.27
SF3A1-207ENST00000471342 FLT4P35916 1363 aa13.38□□□□□ -0.27
SF3A1-207ENST00000471342 ABCC6O95255 1503 aa13.38□□□□□ -0.27
SF3A1-207ENST00000471342 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 PLEKHF1Q96S99 279 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 EYA1Q99502 592 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 ADAMTS8Q9UP79 889 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 SPATA31A6Q5VVP1 1343 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 IGSF1Q8N6C5 1336 aa13.37□□□□□ -0.27
SF3A1-207ENST00000471342 COL5A2P05997 1499 aaPredicted RBP13.36□□□□□ -0.27
SF3A1-207ENST00000471342 BCL9LQ86UU0 1499 aa13.36□□□□□ -0.27
SF3A1-207ENST00000471342 NBPF6Q5VWK0 638 aa13.36□□□□□ -0.27
SF3A1-207ENST00000471342 FNBP4Q8N3X1 1017 aaPredicted RBP13.36□□□□□ -0.27
SF3A1-207ENST00000471342 NBPF4Q96M43 638 aa13.36□□□□□ -0.27
SF3A1-207ENST00000471342 ERBB3P21860 1342 aa13.36□□□□□ -0.27
SF3A1-207ENST00000471342 KDRP35968 1356 aa13.35□□□□□ -0.27
SF3A1-207ENST00000471342 AEBP1Q8IUX7 1158 aa13.35□□□□□ -0.27
SF3A1-207ENST00000471342 MRS2Q9HD23 443 aa13.35□□□□□ -0.27
SF3A1-207ENST00000471342 BLMP54132 1417 aaPredicted RBP13.35□□□□□ -0.27
SF3A1-207ENST00000471342 RSPH6AQ9H0K4 717 aa13.34□□□□□ -0.27
SF3A1-207ENST00000471342 LTN1O94822 1766 aa13.34□□□□□ -0.27
SF3A1-207ENST00000471342 DIAPH1O60610 1272 aaKnown RBP13.33□□□□□ -0.28
SF3A1-207ENST00000471342 ANKRD24Q8TF21 1146 aa13.33□□□□□ -0.28
SF3A1-207ENST00000471342 FAM208AQ9UK61 1670 aaKnown RBP13.33□□□□□ -0.28
SF3A1-207ENST00000471342 PPM1GO15355 546 aaPredicted RBP13.32□□□□□ -0.28
SF3A1-207ENST00000471342 ADAMTS2O95450 1211 aa13.32□□□□□ -0.28
SF3A1-207ENST00000471342 AMPHP49418 695 aa13.32□□□□□ -0.28
SF3A1-207ENST00000471342 RGS17Q9UGC6 210 aaPredicted RBP13.32□□□□□ -0.28
SF3A1-207ENST00000471342 NRAPQ86VF7 1730 aa13.32□□□□□ -0.28
SF3A1-207ENST00000471342 RGPD5Q99666 1765 aa13.32□□□□□ -0.28
SF3A1-207ENST00000471342 NUTM2BA6NNL0 878 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-207ENST00000471342 NUTM2EB1AL46 878 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-207ENST00000471342 LARP1Q6PKG0 1096 aaKnown RBP13.31□□□□□ -0.28
SF3A1-207ENST00000471342 NUTM2AQ8IVF1 878 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-207ENST00000471342 PHACTR3Q96KR7 559 aa13.31□□□□□ -0.28
SF3A1-207ENST00000471342 PRDM11Q9NQV5 511 aa13.31□□□□□ -0.28
SF3A1-207ENST00000471342 ILDR2Q71H61 639 aa13.3□□□□□ -0.28
SF3A1-207ENST00000471342 BTG4Q9NY30 223 aa13.3□□□□□ -0.28
SF3A1-207ENST00000471342 WDR17Q8IZU2 1322 aa13.3□□□□□ -0.28
SF3A1-207ENST00000471342 COL14A1Q05707 1796 aaKnown RBP13.3□□□□□ -0.28
SF3A1-207ENST00000471342 DISP2A7MBM2 1401 aa13.3□□□□□ -0.28
SF3A1-207ENST00000471342 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
SF3A1-207ENST00000471342 RGPD2P0DJD1 1756 aa13.27□□□□□ -0.28
SF3A1-207ENST00000471342 FCHSD2O94868 740 aa13.27□□□□□ -0.29
SF3A1-207ENST00000471342 HMOX1P09601 288 aa13.27□□□□□ -0.29
SF3A1-207ENST00000471342 SULT6B1Q6IMI4 303 aa13.27□□□□□ -0.29
SF3A1-207ENST00000471342 LTV1Q96GA3 475 aaPredicted RBP13.27□□□□□ -0.29
SF3A1-207ENST00000471342 CARD10Q9BWT7 1032 aa13.27□□□□□ -0.29
SF3A1-207ENST00000471342 PLCH1Q4KWH8 1693 aa13.27□□□□□ -0.29
SF3A1-207ENST00000471342 SOCS7O14512 581 aa13.26□□□□□ -0.29
SF3A1-207ENST00000471342 MEGF6O75095 1541 aa13.26□□□□□ -0.29
SF3A1-207ENST00000471342 SPATA31A5Q5VU36 1347 aa13.26□□□□□ -0.29
SF3A1-207ENST00000471342 SPATA31A7Q8IWB4 1347 aa13.26□□□□□ -0.29
SF3A1-207ENST00000471342 FAM9BQ8IZU0 186 aa13.26□□□□□ -0.29
SF3A1-207ENST00000471342 ATRNO75882 1429 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 SPATA31A1Q5TZJ5 1347 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 ZNF521Q96K83 1311 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 ZBTB7CA1YPR0 619 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 UNC5CLQ8IV45 518 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 CFAP53Q96M91 514 aa13.25□□□□□ -0.29
SF3A1-207ENST00000471342 CRB1P82279 1406 aa13.24□□□□□ -0.29
SF3A1-207ENST00000471342 U2AF1L5P0DN76 240 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-207ENST00000471342 PRKAR2BP31323 418 aa13.24□□□□□ -0.29
SF3A1-207ENST00000471342 U2AF1Q01081 240 aaKnown RBP eCLIP13.24□□□□□ -0.29
SF3A1-207ENST00000471342 VPS72Q15906 364 aa13.24□□□□□ -0.29
SF3A1-207ENST00000471342 CCDC146Q8IYE0 955 aa13.24□□□□□ -0.29
SF3A1-207ENST00000471342 C8orf37Q96NL8 207 aa13.24□□□□□ -0.29
SF3A1-207ENST00000471342 NWD2Q9ULI1 1742 aa13.23□□□□□ -0.29
SF3A1-207ENST00000471342 ONECUT3O60422 494 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-207ENST00000471342 TRIM35Q9UPQ4 493 aa13.23□□□□□ -0.29
SF3A1-207ENST00000471342 GLI3P10071 1580 aa13.23□□□□□ -0.29
SF3A1-207ENST00000471342 AFF2P51816 1311 aa13.22□□□□□ -0.29
SF3A1-207ENST00000471342 SENP3-EIF4A1A0A087X0R7 540 aa13.22□□□□□ -0.29
SF3A1-207ENST00000471342 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
SF3A1-207ENST00000471342 MTHFSDQ2M296 383 aaKnown RBP13.22□□□□□ -0.29
SF3A1-207ENST00000471342 APAF1O14727 1248 aa13.21□□□□□ -0.29
SF3A1-207ENST00000471342 RUNDC1Q96C34 613 aa13.21□□□□□ -0.29
SF3A1-207ENST00000471342 NGLY1Q96IV0 654 aa13.21□□□□□ -0.29
SF3A1-207ENST00000471342 STRN4Q9NRL3 753 aa13.21□□□□□ -0.29
SF3A1-207ENST00000471342 NUDCQ9Y266 331 aa13.21□□□□□ -0.29
SF3A1-207ENST00000471342 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.21□□□□□ -0.3
SF3A1-207ENST00000471342 OVOS2A0A0G2JMS6 1433 aa13.21□□□□□ -0.3
SF3A1-207ENST00000471342 TMPOP42166 694 aaKnown RBP13.2□□□□□ -0.3
SF3A1-207ENST00000471342 HAP1P54257 671 aaPredicted RBP13.2□□□□□ -0.3
SF3A1-207ENST00000471342 NCBP3Q53F19 620 aaKnown RBP13.2□□□□□ -0.3
SF3A1-207ENST00000471342 BARGINQ6ZT62 677 aa13.2□□□□□ -0.3
SF3A1-207ENST00000471342 TCP11L2Q8N4U5 519 aa13.2□□□□□ -0.3
SF3A1-207ENST00000471342 NLRP2Q9NX02 1062 aa13.2□□□□□ -0.3
SF3A1-207ENST00000471342 PLEKHG2Q9H7P9 1386 aa13.2□□□□□ -0.3
SF3A1-207ENST00000471342 CYP27B1O15528 508 aa13.19□□□□□ -0.3
SF3A1-207ENST00000471342 SPINK5Q9NQ38 1064 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-207ENST00000471342 USP21Q9UK80 565 aa13.19□□□□□ -0.3
SF3A1-207ENST00000471342 POTEAQ6S8J7 498 aa13.18□□□□□ -0.3
SF3A1-207ENST00000471342 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
SF3A1-207ENST00000471342 SHANK3Q9BYB0 1731 aa13.17□□□□□ -0.3
SF3A1-207ENST00000471342 WDR43Q15061 677 aaKnown RBP eCLIP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms