RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 Q6ZNB5 142 aa9.94□□□□□ -0.82
CKS1B-204ENST00000471245 ZNF511Q8NB15 262 aa9.94□□□□□ -0.82
CKS1B-204ENST00000471245 SH3BP2P78314 561 aa9.93□□□□□ -0.82
CKS1B-204ENST00000471245 ZCCHC6Q5VYS8 1495 aaKnown RBP9.92□□□□□ -0.82
CKS1B-204ENST00000471245 PATL2C9JE40 543 aaKnown RBP9.92□□□□□ -0.82
CKS1B-204ENST00000471245 SKOR1P84550 965 aa9.91□□□□□ -0.82
CKS1B-204ENST00000471245 SH3BP5LQ7L8J4 393 aa9.91□□□□□ -0.82
CKS1B-204ENST00000471245 SH3RF1Q7Z6J0 888 aa9.91□□□□□ -0.82
CKS1B-204ENST00000471245 BPHLQ86WA6 291 aaPredicted RBP9.91□□□□□ -0.82
CKS1B-204ENST00000471245 AEBP1Q8IUX7 1158 aa9.91□□□□□ -0.82
CKS1B-204ENST00000471245 PLEKHM2Q8IWE5 1019 aa9.91□□□□□ -0.82
CKS1B-204ENST00000471245 WNT7AO00755 349 aa9.9□□□□□ -0.82
CKS1B-204ENST00000471245 ZNF697Q5TEC3 545 aa9.9□□□□□ -0.82
CKS1B-204ENST00000471245 OCSTAMPQ9BR26 566 aa9.9□□□□□ -0.82
CKS1B-204ENST00000471245 PIK3CDO00329 1044 aa9.89□□□□□ -0.83
CKS1B-204ENST00000471245 BRD1O95696 1058 aa9.89□□□□□ -0.83
CKS1B-204ENST00000471245 VARSP26640 1264 aaKnown RBP9.89□□□□□ -0.83
CKS1B-204ENST00000471245 MPNDQ8N594 471 aa9.89□□□□□ -0.83
CKS1B-204ENST00000471245 CCDC9Q9Y3X0 531 aaKnown RBP9.89□□□□□ -0.83
CKS1B-204ENST00000471245 USP17L3A6NCW0 530 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 USP17L4A6NCW7 530 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 PRR20EP86478 221 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 PRR20CP86479 221 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 PRR20DP86480 221 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 PRR20BP86481 221 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 PRR20AP86496 221 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 ELOAQ14241 798 aaKnown RBP9.88□□□□□ -0.83
CKS1B-204ENST00000471245 KANK4Q5T7N3 995 aaPredicted RBP9.88□□□□□ -0.83
CKS1B-204ENST00000471245 RC3H1Q5TC82 1133 aaKnown RBP9.88□□□□□ -0.83
CKS1B-204ENST00000471245 USP17L2Q6R6M4 530 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 USP17L1Q7RTZ2 530 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 VRTNQ9H8Y1 702 aa9.88□□□□□ -0.83
CKS1B-204ENST00000471245 USP17L5A8MUK1 530 aa9.87□□□□□ -0.83
CKS1B-204ENST00000471245 SKIP12755 728 aa9.87□□□□□ -0.83
CKS1B-204ENST00000471245 KCNA1Q09470 495 aa9.87□□□□□ -0.83
CKS1B-204ENST00000471245 ARHGAP9Q9BRR9 750 aa9.87□□□□□ -0.83
CKS1B-204ENST00000471245 CEP126Q9P2H0 1117 aa9.87□□□□□ -0.83
CKS1B-204ENST00000471245 GDF9O60383 454 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 LINC01559Q495D7 138 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 FAM174AQ8TBP5 190 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 ADAM32Q8TC27 787 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 PKD2L1Q9P0L9 805 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 PCDHB9Q9Y5E1 797 aa9.86□□□□□ -0.83
CKS1B-204ENST00000471245 TMEM88BA6NKF7 163 aa9.85□□□□□ -0.83
CKS1B-204ENST00000471245 LZTS3O60299 673 aaPredicted RBP9.85□□□□□ -0.83
CKS1B-204ENST00000471245 SLFNL1Q499Z3 407 aa9.85□□□□□ -0.83
CKS1B-204ENST00000471245 TRMT44Q8IYL2 757 aaKnown RBP9.85□□□□□ -0.83
CKS1B-204ENST00000471245 FOXJ1Q92949 421 aa9.85□□□□□ -0.83
CKS1B-204ENST00000471245 C1QTNF2Q9BXJ5 285 aa9.85□□□□□ -0.83
CKS1B-204ENST00000471245 SIAH2O43255 324 aa9.84□□□□□ -0.83
CKS1B-204ENST00000471245 PHTF2Q8N3S3 785 aa9.84□□□□□ -0.83
CKS1B-204ENST00000471245 EHBP1Q8NDI1 1231 aa9.84□□□□□ -0.83
CKS1B-204ENST00000471245 CHIC2Q9UKJ5 165 aa9.84□□□□□ -0.83
CKS1B-204ENST00000471245 LAPTM4AQ15012 233 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 AGERQ15109 404 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 CDCA8Q53HL2 280 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 C4orf48Q5BLP8 95 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 TRIM67Q6ZTA4 783 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 ZBTB33Q86T24 672 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 RNF135Q8IUD6 432 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 CUX2O14529 1486 aa9.83□□□□□ -0.84
CKS1B-204ENST00000471245 FAM196BA6NMK8 535 aa9.82□□□□□ -0.84
CKS1B-204ENST00000471245 MAP7D1Q3KQU3 841 aa9.82□□□□□ -0.84
CKS1B-204ENST00000471245 PLPP7Q8NBV4 271 aa9.82□□□□□ -0.84
CKS1B-204ENST00000471245 MRGPRX2Q96LB1 330 aa9.82□□□□□ -0.84
CKS1B-204ENST00000471245 CDK15Q96Q40 435 aa9.82□□□□□ -0.84
CKS1B-204ENST00000471245 CDV3Q9UKY7 258 aaKnown RBP9.82□□□□□ -0.84
CKS1B-204ENST00000471245 ATP5J2-PTCD1G3V325 749 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 NCOA4Q13772 614 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 ERFEQ4G0M1 354 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 B4GALNT3Q6L9W6 998 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 SNIP1Q8TAD8 396 aaKnown RBP9.8□□□□□ -0.84
CKS1B-204ENST00000471245 TOR4AQ9NXH8 423 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 ZMIZ1Q9ULJ6 1067 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 MAP4K5Q9Y4K4 846 aa9.8□□□□□ -0.84
CKS1B-204ENST00000471245 DZIP3Q86Y13 1208 aaKnown RBP9.79□□□□□ -0.84
CKS1B-204ENST00000471245 MKRN1Q9UHC7 482 aaKnown RBP9.79□□□□□ -0.84
CKS1B-204ENST00000471245 NOVA2Q9UNW9 492 aaKnown RBP9.79□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L15C9J2P7 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L10C9JJH3 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L13C9JLJ4 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L12C9JPN9 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L11C9JVI0 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L21D6R901 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L18D6R9N7 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L22D6RA61 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L17D6RBQ6 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L19D6RCP7 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L20D6RJB6 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 USP17L24Q0WX57 530 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 FOXC1Q12948 553 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 TRAF7Q6Q0C0 670 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 DEPDC4Q8N2C3 294 aa9.78□□□□□ -0.84
CKS1B-204ENST00000471245 MAGEB6P1A0A0J9YX57 407 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 CARNS1A5YM72 827 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 EML3Q32P44 896 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 TMCO4Q5TGY1 634 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 TMEM164Q5U3C3 297 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 CCDC125Q86Z20 511 aa9.77□□□□□ -0.85
CKS1B-204ENST00000471245 CYP4X1Q8N118 509 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms