RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 R3HDM1Q15032 1099 aaKnown RBP24.81■■□□□ 1.56
COL7A1-208ENST00000470076 SOX12O15370 315 aa24.8■■□□□ 1.56
COL7A1-208ENST00000470076 NFAT5O94916 1531 aa24.8■■□□□ 1.56
COL7A1-208ENST00000470076 RGPD5Q99666 1765 aa24.8■■□□□ 1.56
COL7A1-208ENST00000470076 LRRC37A3O60309 1634 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 OVOS2A0A0G2JMS6 1433 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 OVOS2A0A0J9YW53 1432 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 OVOS2Q6IE36 1432 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 DDB1Q16531 1140 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 WNK3Q9BYP7 1800 aa24.79■■□□□ 1.56
COL7A1-208ENST00000470076 RREB1Q92766 1687 aa24.78■■□□□ 1.56
COL7A1-208ENST00000470076 CDCA7Q9BWT1 371 aaPredicted RBP24.78■■□□□ 1.56
COL7A1-208ENST00000470076 USP31Q70CQ4 1352 aa24.78■■□□□ 1.56
COL7A1-208ENST00000470076 PEAK1Q9H792 1746 aa24.78■■□□□ 1.56
COL7A1-208ENST00000470076 CD163L1Q9NR16 1453 aa24.77■■□□□ 1.56
COL7A1-208ENST00000470076 ABCC6O95255 1503 aa24.77■■□□□ 1.56
COL7A1-208ENST00000470076 TMC1Q8TDI8 760 aa24.77■■□□□ 1.56
COL7A1-208ENST00000470076 USP54Q70EL1 1684 aa24.77■■□□□ 1.56
COL7A1-208ENST00000470076 HDGFL2Q7Z4V5 671 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-208ENST00000470076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.76■■□□□ 1.55
COL7A1-208ENST00000470076 PUS7Q96PZ0 661 aaKnown RBP24.76■■□□□ 1.55
COL7A1-208ENST00000470076 CARD10Q9BWT7 1032 aa24.76■■□□□ 1.55
COL7A1-208ENST00000470076 CSB-PGBD3P0DP91 1061 aa24.75■■□□□ 1.55
COL7A1-208ENST00000470076 NUP188Q5SRE5 1749 aa24.74■■□□□ 1.55
COL7A1-208ENST00000470076 SBF2Q86WG5 1849 aa24.74■■□□□ 1.55
COL7A1-208ENST00000470076 SLC12A5Q9H2X9 1139 aa24.73■■□□□ 1.55
COL7A1-208ENST00000470076 TERF2IPQ9NYB0 399 aa24.73■■□□□ 1.55
COL7A1-208ENST00000470076 EDC4Q6P2E9 1401 aaKnown RBP24.72■■□□□ 1.55
COL7A1-208ENST00000470076 NME9Q86XW9 330 aa24.72■■□□□ 1.55
COL7A1-208ENST00000470076 TRIM26Q12899 539 aaPredicted RBP24.71■■□□□ 1.55
COL7A1-208ENST00000470076 NBPF14Q5TI25 921 aa24.71■■□□□ 1.55
COL7A1-208ENST00000470076 CCDC7Q96M83 1385 aa24.7■■□□□ 1.55
COL7A1-208ENST00000470076 RGPD3A6NKT7 1758 aaPredicted RBP24.7■■□□□ 1.54
COL7A1-208ENST00000470076 RGPD4Q7Z3J3 1758 aa24.7■■□□□ 1.54
COL7A1-208ENST00000470076 SLC24A1O60721 1099 aa24.69■■□□□ 1.54
COL7A1-208ENST00000470076 BCL9O00512 1426 aa24.69■■□□□ 1.54
COL7A1-208ENST00000470076 A0A1W2PP64 1363 aa24.68■■□□□ 1.54
COL7A1-208ENST00000470076 LTN1O94822 1766 aa24.68■■□□□ 1.54
COL7A1-208ENST00000470076 MARCH10Q8NA82 808 aaPredicted RBP24.68■■□□□ 1.54
COL7A1-208ENST00000470076 NINLQ9Y2I6 1382 aa24.67■■□□□ 1.54
COL7A1-208ENST00000470076 PLSCR1O15162 318 aa24.67■■□□□ 1.54
COL7A1-208ENST00000470076 TESK2Q96S53 571 aa24.67■■□□□ 1.54
COL7A1-208ENST00000470076 BCL11BQ9C0K0 894 aaPredicted RBP24.67■■□□□ 1.54
COL7A1-208ENST00000470076 ST20-MTHFSA0A0A6YYL1 179 aa24.66■■□□□ 1.54
COL7A1-208ENST00000470076 EXOC5O00471 708 aa24.66■■□□□ 1.54
COL7A1-208ENST00000470076 ERBB3P21860 1342 aa24.65■■□□□ 1.54
COL7A1-208ENST00000470076 TNS2Q63HR2 1409 aa24.62■■□□□ 1.53
COL7A1-208ENST00000470076 NLRP2Q9NX02 1062 aa24.61■■□□□ 1.53
COL7A1-208ENST00000470076 PTF1AQ7RTS3 328 aa24.6■■□□□ 1.53
COL7A1-208ENST00000470076 ANKRD24Q8TF21 1146 aa24.59■■□□□ 1.53
COL7A1-208ENST00000470076 IL2RBP14784 551 aa24.57■■□□□ 1.52
COL7A1-208ENST00000470076 IP6K1Q92551 441 aa24.55■■□□□ 1.52
COL7A1-208ENST00000470076 COG3Q96JB2 828 aa24.55■■□□□ 1.52
COL7A1-208ENST00000470076 ANKRD36BQ8N2N9 1353 aa24.54■■□□□ 1.52
COL7A1-208ENST00000470076 USP47Q96K76 1375 aa24.54■■□□□ 1.52
COL7A1-208ENST00000470076 FAM208AQ9UK61 1670 aaKnown RBP24.53■■□□□ 1.52
COL7A1-208ENST00000470076 TMF1P82094 1093 aa24.53■■□□□ 1.52
COL7A1-208ENST00000470076 PROM2Q8N271 834 aa24.53■■□□□ 1.52
COL7A1-208ENST00000470076 SPON1Q9HCB6 807 aa24.53■■□□□ 1.52
COL7A1-208ENST00000470076 NHSQ6T4R5 1651 aa24.53■■□□□ 1.52
COL7A1-208ENST00000470076 KCNQ2O43526 872 aa24.51■■□□□ 1.51
COL7A1-208ENST00000470076 ANO8Q9HCE9 1232 aaPredicted RBP24.51■■□□□ 1.51
COL7A1-208ENST00000470076 TXNRD1Q16881 649 aa24.5■■□□□ 1.51
COL7A1-208ENST00000470076 MAP3K19Q56UN5 1328 aa24.48■■□□□ 1.51
COL7A1-208ENST00000470076 KAT6BQ8WYB5 2073 aa24.47■■□□□ 1.51
COL7A1-208ENST00000470076 CDCA8Q53HL2 280 aa24.47■■□□□ 1.51
COL7A1-208ENST00000470076 CASZ1Q86V15 1759 aa24.47■■□□□ 1.51
COL7A1-208ENST00000470076 HOXC9P31274 260 aa24.46■■□□□ 1.51
COL7A1-208ENST00000470076 AMPHP49418 695 aa24.46■■□□□ 1.51
COL7A1-208ENST00000470076 LTV1Q96GA3 475 aaPredicted RBP24.46■■□□□ 1.51
COL7A1-208ENST00000470076 ACSBG1Q96GR2 724 aa24.46■■□□□ 1.51
COL7A1-208ENST00000470076 PPP1R1BQ9UD71 204 aaPredicted RBP24.46■■□□□ 1.51
COL7A1-208ENST00000470076 TIMELESSQ9UNS1 1208 aa24.46■■□□□ 1.51
COL7A1-208ENST00000470076 STK32BQ9NY57 414 aa24.45■■□□□ 1.5
COL7A1-208ENST00000470076 RTL1A6NKG5 1358 aa24.43■■□□□ 1.5
COL7A1-208ENST00000470076 BTAF1O14981 1849 aa24.43■■□□□ 1.5
COL7A1-208ENST00000470076 FYB1O15117 783 aa24.43■■□□□ 1.5
COL7A1-208ENST00000470076 FBLN1P23142 703 aa24.42■■□□□ 1.5
COL7A1-208ENST00000470076 SLC15A2Q16348 729 aa24.42■■□□□ 1.5
COL7A1-208ENST00000470076 GGNBP2Q9H3C7 697 aa24.41■■□□□ 1.5
COL7A1-208ENST00000470076 CLSPNQ9HAW4 1339 aa24.4■■□□□ 1.5
COL7A1-208ENST00000470076 RGPD2P0DJD1 1756 aa24.39■■□□□ 1.5
COL7A1-208ENST00000470076 DDX54Q8TDD1 881 aaKnown RBP24.39■■□□□ 1.49
COL7A1-208ENST00000470076 PDGFDQ9GZP0 370 aaPredicted RBP24.39■■□□□ 1.49
COL7A1-208ENST00000470076 KIF20BQ96Q89 1820 aa24.39■■□□□ 1.49
COL7A1-208ENST00000470076 RRS1Q15050 365 aaKnown RBP24.38■■□□□ 1.49
COL7A1-208ENST00000470076 ZBTB7AO95365 584 aa24.36■■□□□ 1.49
COL7A1-208ENST00000470076 SMG6Q86US8 1419 aaKnown RBP24.35■■□□□ 1.49
COL7A1-208ENST00000470076 PAPPAQ13219 1627 aa24.35■■□□□ 1.49
COL7A1-208ENST00000470076 MYOM1P52179 1685 aa24.35■■□□□ 1.49
COL7A1-208ENST00000470076 ZCRB1Q8TBF4 217 aaKnown RBP24.34■■□□□ 1.49
COL7A1-208ENST00000470076 KIF24Q5T7B8 1368 aa24.33■■□□□ 1.49
COL7A1-208ENST00000470076 NBPF6Q5VWK0 638 aa24.33■■□□□ 1.49
COL7A1-208ENST00000470076 NBPF4Q96M43 638 aa24.33■■□□□ 1.49
COL7A1-208ENST00000470076 MEGF6O75095 1541 aa24.33■■□□□ 1.49
COL7A1-208ENST00000470076 CGNL1Q0VF96 1302 aa24.33■■□□□ 1.48
COL7A1-208ENST00000470076 SHANK3Q9BYB0 1731 aa24.32■■□□□ 1.48
COL7A1-208ENST00000470076 DCAF8L1A6NGE4 600 aa24.32■■□□□ 1.48
COL7A1-208ENST00000470076 PTGER2P43116 358 aa24.32■■□□□ 1.48
COL7A1-208ENST00000470076 PCGF6Q9BYE7 350 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms