RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 Q3C1V9 767 aa9.35□□□□□ -0.91
PTCD3-207ENST00000467273 ZFYVE16Q7Z3T8 1539 aa9.35□□□□□ -0.91
PTCD3-207ENST00000467273 PTPRTO14522 1441 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 FAM181BA6NEQ2 426 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 MMP16P51512 607 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 SLC16A10Q8TF71 515 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 PHOX2BQ99453 314 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 STRCQ7RTU9 1775 aa9.34□□□□□ -0.91
PTCD3-207ENST00000467273 ARHGEF12Q9NZN5 1544 aa9.33□□□□□ -0.92
PTCD3-207ENST00000467273 RAPGEF6Q8TEU7 1601 aa9.33□□□□□ -0.92
PTCD3-207ENST00000467273 SETD1BQ9UPS6 1966 aaKnown RBP9.32□□□□□ -0.92
PTCD3-207ENST00000467273 RC3H1Q5TC82 1133 aaKnown RBP9.32□□□□□ -0.92
PTCD3-207ENST00000467273 UHRF1BP1Q6BDS2 1440 aa9.31□□□□□ -0.92
PTCD3-207ENST00000467273 SIGLEC1Q9BZZ2 1709 aa9.31□□□□□ -0.92
PTCD3-207ENST00000467273 GPR37O15354 613 aa9.31□□□□□ -0.92
PTCD3-207ENST00000467273 ALDH1A1P00352 501 aa9.31□□□□□ -0.92
PTCD3-207ENST00000467273 USB1Q9BQ65 265 aaKnown RBP9.31□□□□□ -0.92
PTCD3-207ENST00000467273 PRXQ9BXM0 1461 aa9.3□□□□□ -0.92
PTCD3-207ENST00000467273 DXOO77932 396 aaKnown RBP9.3□□□□□ -0.92
PTCD3-207ENST00000467273 SMYD5Q6GMV2 418 aa9.3□□□□□ -0.92
PTCD3-207ENST00000467273 SAMD9Q5K651 1589 aa9.29□□□□□ -0.92
PTCD3-207ENST00000467273 BMP1P13497 986 aa9.29□□□□□ -0.92
PTCD3-207ENST00000467273 GMPRP36959 345 aa9.29□□□□□ -0.92
PTCD3-207ENST00000467273 SKOR1P84550 965 aa9.29□□□□□ -0.92
PTCD3-207ENST00000467273 NXF1Q9UBU9 619 aaKnown RBP9.29□□□□□ -0.92
PTCD3-207ENST00000467273 HECW1Q76N89 1606 aa9.28□□□□□ -0.92
PTCD3-207ENST00000467273 LTBP4Q8N2S1 1624 aa9.28□□□□□ -0.92
PTCD3-207ENST00000467273 TESPA1A2RU30 521 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-207ENST00000467273 VEGFBP49765 207 aa9.28□□□□□ -0.92
PTCD3-207ENST00000467273 C9orf84Q5VXU9 1444 aa9.28□□□□□ -0.92
PTCD3-207ENST00000467273 ATP10AO60312 1499 aa9.28□□□□□ -0.92
PTCD3-207ENST00000467273 NUP153P49790 1475 aaKnown RBP9.28□□□□□ -0.92
PTCD3-207ENST00000467273 WNT7BP56706 349 aa9.27□□□□□ -0.93
PTCD3-207ENST00000467273 ZSCAN1Q8NBB4 408 aa9.27□□□□□ -0.93
PTCD3-207ENST00000467273 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.26□□□□□ -0.93
PTCD3-207ENST00000467273 PLEKHD1A6NEE1 506 aa9.26□□□□□ -0.93
PTCD3-207ENST00000467273 ARID3CA6NKF2 412 aa9.26□□□□□ -0.93
PTCD3-207ENST00000467273 IRF7Q92985 503 aa9.26□□□□□ -0.93
PTCD3-207ENST00000467273 HLA-CQ95604 372 aa9.26□□□□□ -0.93
PTCD3-207ENST00000467273 KDM4AO75164 1064 aa9.25□□□□□ -0.93
PTCD3-207ENST00000467273 REREQ9P2R6 1566 aa9.24□□□□□ -0.93
PTCD3-207ENST00000467273 CD46P15529 392 aa9.24□□□□□ -0.93
PTCD3-207ENST00000467273 MLECQ14165 292 aa9.24□□□□□ -0.93
PTCD3-207ENST00000467273 WASF2Q9Y6W5 498 aa9.24□□□□□ -0.93
PTCD3-207ENST00000467273 CAPN5O15484 640 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-207ENST00000467273 TRIM46Q7Z4K8 759 aa9.23□□□□□ -0.93
PTCD3-207ENST00000467273 EHBP1Q8NDI1 1231 aa9.23□□□□□ -0.93
PTCD3-207ENST00000467273 PLCH2O75038 1416 aa9.22□□□□□ -0.93
PTCD3-207ENST00000467273 SCAPERQ9BY12 1400 aa9.22□□□□□ -0.93
PTCD3-207ENST00000467273 NCOA1Q15788 1441 aa9.22□□□□□ -0.93
PTCD3-207ENST00000467273 TRAPPC8Q9Y2L5 1435 aa9.22□□□□□ -0.93
PTCD3-207ENST00000467273 ZNF518AQ6AHZ1 1483 aa9.21□□□□□ -0.93
PTCD3-207ENST00000467273 C3P01024 1663 aa9.21□□□□□ -0.93
PTCD3-207ENST00000467273 GPIHBP1Q8IV16 184 aa9.21□□□□□ -0.94
PTCD3-207ENST00000467273 AGLP35573 1532 aa9.21□□□□□ -0.94
PTCD3-207ENST00000467273 KDM5CP41229 1560 aa9.2□□□□□ -0.94
PTCD3-207ENST00000467273 LORP23490 312 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-207ENST00000467273 CEBPAP49715 358 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-207ENST00000467273 H3BM21 787 aa9.19□□□□□ -0.94
PTCD3-207ENST00000467273 JUNDP17535 347 aa9.19□□□□□ -0.94
PTCD3-207ENST00000467273 GUCA2AQ02747 115 aa9.19□□□□□ -0.94
PTCD3-207ENST00000467273 NPAS3Q8IXF0 933 aa9.19□□□□□ -0.94
PTCD3-207ENST00000467273 CNTLNQ9NXG0 1405 aa9.19□□□□□ -0.94
PTCD3-207ENST00000467273 USP46P62068 366 aa9.18□□□□□ -0.94
PTCD3-207ENST00000467273 NPATQ14207 1427 aa9.18□□□□□ -0.94
PTCD3-207ENST00000467273 ERBB4Q15303 1308 aa9.18□□□□□ -0.94
PTCD3-207ENST00000467273 EFCAB2Q5VUJ9 269 aa9.18□□□□□ -0.94
PTCD3-207ENST00000467273 MYO5CQ9NQX4 1742 aa9.18□□□□□ -0.94
PTCD3-207ENST00000467273 UBAP1LF5GYI3 381 aa9.17□□□□□ -0.94
PTCD3-207ENST00000467273 HOXA2O43364 376 aa9.17□□□□□ -0.94
PTCD3-207ENST00000467273 SYMPKQ92797 1274 aaKnown RBP9.17□□□□□ -0.94
PTCD3-207ENST00000467273 NUDT12Q9BQG2 462 aa9.17□□□□□ -0.94
PTCD3-207ENST00000467273 MROH2AA6NES4 1674 aa9.16□□□□□ -0.94
PTCD3-207ENST00000467273 MED1Q15648 1581 aaPredicted RBP9.16□□□□□ -0.94
PTCD3-207ENST00000467273 DIP2CQ9Y2E4 1556 aa9.16□□□□□ -0.94
PTCD3-207ENST00000467273 MDM2Q00987 491 aaPredicted RBP9.16□□□□□ -0.94
PTCD3-207ENST00000467273 ESF1Q9H501 851 aaKnown RBP9.16□□□□□ -0.94
PTCD3-207ENST00000467273 CAMSAP1Q5T5Y3 1602 aa9.16□□□□□ -0.94
PTCD3-207ENST00000467273 PLA2R1Q13018 1463 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 MLH3Q9UHC1 1453 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 LOC100996750A0A140TA64 210 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 SIAH2O43255 324 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 PTCRAQ6ISU1 281 aaPredicted RBP9.15□□□□□ -0.94
PTCD3-207ENST00000467273 ZFP42Q96MM3 310 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 KRTAP4-6Q9BYQ5 205 aa9.15□□□□□ -0.94
PTCD3-207ENST00000467273 ZNF142P52746 1687 aaPredicted RBP9.13□□□□□ -0.95
PTCD3-207ENST00000467273 TLL2Q9Y6L7 1015 aa9.13□□□□□ -0.95
PTCD3-207ENST00000467273 ABCA6Q8N139 1617 aa9.13□□□□□ -0.95
PTCD3-207ENST00000467273 SH3BP2P78314 561 aa9.12□□□□□ -0.95
PTCD3-207ENST00000467273 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.12□□□□□ -0.95
PTCD3-207ENST00000467273 TCOF1Q13428 1488 aaKnown RBP9.12□□□□□ -0.95
PTCD3-207ENST00000467273 KIF14Q15058 1648 aa9.12□□□□□ -0.95
PTCD3-207ENST00000467273 ZNF335Q9H4Z2 1342 aaPredicted RBP9.11□□□□□ -0.95
PTCD3-207ENST00000467273 CDK11AQ9UQ88 783 aaPredicted RBP9.11□□□□□ -0.95
PTCD3-207ENST00000467273 ARHGAP5Q13017 1502 aa9.1□□□□□ -0.95
PTCD3-207ENST00000467273 CDK13Q14004 1512 aaKnown RBP9.1□□□□□ -0.95
PTCD3-207ENST00000467273 MAP2K5Q13163 448 aa9.1□□□□□ -0.95
PTCD3-207ENST00000467273 LINC01559Q495D7 138 aa9.1□□□□□ -0.95
PTCD3-207ENST00000467273 RETREG3Q86VR2 466 aa9.1□□□□□ -0.95
PTCD3-207ENST00000467273 AFAP1Q8N556 730 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms