RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 COL16A1Q07092 1604 aaPredicted RBP17.29■□□□□ 0.36
COL4A1-202ENST00000467182 AMPHP49418 695 aa17.28■□□□□ 0.36
COL4A1-202ENST00000467182 RUNDC1Q96C34 613 aa17.28■□□□□ 0.36
COL4A1-202ENST00000467182 COL22A1Q8NFW1 1626 aaPredicted RBP17.28■□□□□ 0.36
COL4A1-202ENST00000467182 PHLPP1O60346 1717 aa17.27■□□□□ 0.36
COL4A1-202ENST00000467182 IP6K1Q92551 441 aa17.27■□□□□ 0.36
COL4A1-202ENST00000467182 RGPD5Q99666 1765 aa17.27■□□□□ 0.35
COL4A1-202ENST00000467182 TOM1O60784 492 aa17.26■□□□□ 0.35
COL4A1-202ENST00000467182 CABLES1Q8TDN4 633 aa17.26■□□□□ 0.35
COL4A1-202ENST00000467182 RSPH6AQ9H0K4 717 aa17.26■□□□□ 0.35
COL4A1-202ENST00000467182 ABCC6O95255 1503 aa17.26■□□□□ 0.35
COL4A1-202ENST00000467182 CERKQ8TCT0 537 aa17.25■□□□□ 0.35
COL4A1-202ENST00000467182 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 CAMTA1Q9Y6Y1 1673 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 APAF1O14727 1248 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 PLEKHG5O94827 1062 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 FCHSD2O94868 740 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 RGPD2P0DJD1 1756 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 CPDO75976 1380 aa17.24■□□□□ 0.35
COL4A1-202ENST00000467182 LMO7Q8WWI1 1683 aa17.23■□□□□ 0.35
COL4A1-202ENST00000467182 IGSF1Q8N6C5 1336 aa17.22■□□□□ 0.35
COL4A1-202ENST00000467182 TCP11L2Q8N4U5 519 aa17.22■□□□□ 0.35
COL4A1-202ENST00000467182 KDRP35968 1356 aa17.22■□□□□ 0.35
COL4A1-202ENST00000467182 UBAP1LF5GYI3 381 aa17.21■□□□□ 0.35
COL4A1-202ENST00000467182 HMOX1P09601 288 aa17.21■□□□□ 0.35
COL4A1-202ENST00000467182 ZC3H6P61129 1189 aaKnown RBP17.21■□□□□ 0.35
COL4A1-202ENST00000467182 NCBP3Q53F19 620 aaKnown RBP17.21■□□□□ 0.35
COL4A1-202ENST00000467182 AEBP1Q8IUX7 1158 aa17.21■□□□□ 0.35
COL4A1-202ENST00000467182 LRRC59Q96AG4 307 aaKnown RBP17.21■□□□□ 0.35
COL4A1-202ENST00000467182 EYA1Q99502 592 aa17.21■□□□□ 0.35
COL4A1-202ENST00000467182 PHF23Q9BUL5 403 aaPredicted RBP17.21■□□□□ 0.35
COL4A1-202ENST00000467182 AXIN2Q9Y2T1 843 aa17.21■□□□□ 0.35
COL4A1-202ENST00000467182 SALL2Q9Y467 1007 aaPredicted RBP17.21■□□□□ 0.35
COL4A1-202ENST00000467182 NCAPD2Q15021 1401 aa17.21■□□□□ 0.34
COL4A1-202ENST00000467182 PRKAR2BP31323 418 aa17.2■□□□□ 0.34
COL4A1-202ENST00000467182 KIAA0232Q92628 1395 aa17.19■□□□□ 0.34
COL4A1-202ENST00000467182 PIP4K2BP78356 416 aa17.19■□□□□ 0.34
COL4A1-202ENST00000467182 NGEFQ8N5V2 710 aa17.19■□□□□ 0.34
COL4A1-202ENST00000467182 ZBTB7CA1YPR0 619 aa17.18■□□□□ 0.34
COL4A1-202ENST00000467182 SULT6B1Q6IMI4 303 aa17.18■□□□□ 0.34
COL4A1-202ENST00000467182 PHACTR3Q96KR7 559 aa17.18■□□□□ 0.34
COL4A1-202ENST00000467182 PNNQ9H307 717 aaKnown RBP17.18■□□□□ 0.34
COL4A1-202ENST00000467182 DLG5Q8TDM6 1919 aa17.17■□□□□ 0.34
COL4A1-202ENST00000467182 TMPOP42166 694 aaKnown RBP17.17■□□□□ 0.34
COL4A1-202ENST00000467182 CCDC27Q2M243 656 aa17.17■□□□□ 0.34
COL4A1-202ENST00000467182 RRP7AQ9Y3A4 280 aaKnown RBP17.17■□□□□ 0.34
COL4A1-202ENST00000467182 FAM208AQ9UK61 1670 aaKnown RBP17.16■□□□□ 0.34
COL4A1-202ENST00000467182 PDE3BQ13370 1112 aa17.16■□□□□ 0.34
COL4A1-202ENST00000467182 ANKRD24Q8TF21 1146 aa17.16■□□□□ 0.34
COL4A1-202ENST00000467182 LTV1Q96GA3 475 aaPredicted RBP17.16■□□□□ 0.34
COL4A1-202ENST00000467182 MAPK8IP3Q9UPT6 1336 aa17.16■□□□□ 0.34
COL4A1-202ENST00000467182 NBPF6Q5VWK0 638 aa17.15■□□□□ 0.34
COL4A1-202ENST00000467182 CDCA7LQ96GN5 454 aa17.15■□□□□ 0.34
COL4A1-202ENST00000467182 NBPF4Q96M43 638 aa17.15■□□□□ 0.34
COL4A1-202ENST00000467182 ERBB3P21860 1342 aa17.15■□□□□ 0.34
COL4A1-202ENST00000467182 CHRNA2Q15822 529 aa17.14■□□□□ 0.33
COL4A1-202ENST00000467182 WWC1Q8IX03 1113 aa17.14■□□□□ 0.33
COL4A1-202ENST00000467182 TRIM35Q9UPQ4 493 aa17.14■□□□□ 0.33
COL4A1-202ENST00000467182 NFE2L2Q16236 605 aa17.13■□□□□ 0.33
COL4A1-202ENST00000467182 COL14A1Q05707 1796 aaKnown RBP17.12■□□□□ 0.33
COL4A1-202ENST00000467182 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
COL4A1-202ENST00000467182 USHBP1Q8N6Y0 703 aa17.12■□□□□ 0.33
COL4A1-202ENST00000467182 SPINK5Q9NQ38 1064 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-202ENST00000467182 TRMT2AQ8IZ69 625 aaKnown RBP17.11■□□□□ 0.33
COL4A1-202ENST00000467182 PRDM11Q9NQV5 511 aa17.11■□□□□ 0.33
COL4A1-202ENST00000467182 COL5A2P05997 1499 aaPredicted RBP17.11■□□□□ 0.33
COL4A1-202ENST00000467182 RIPK4P57078 832 aa17.1■□□□□ 0.33
COL4A1-202ENST00000467182 GOLGA2Q08379 1002 aa17.1■□□□□ 0.33
COL4A1-202ENST00000467182 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
COL4A1-202ENST00000467182 FAM83GA6ND36 823 aa17.09■□□□□ 0.33
COL4A1-202ENST00000467182 WDR63Q8IWG1 891 aa17.09■□□□□ 0.33
COL4A1-202ENST00000467182 PLCH1Q4KWH8 1693 aa17.08■□□□□ 0.32
COL4A1-202ENST00000467182 HAP1P54257 671 aaPredicted RBP17.08■□□□□ 0.32
COL4A1-202ENST00000467182 DUSP27Q5VZP5 1158 aa17.08■□□□□ 0.32
COL4A1-202ENST00000467182 NEFMP07197 916 aa17.07■□□□□ 0.32
COL4A1-202ENST00000467182 MTHFSDQ2M296 383 aaKnown RBP17.07■□□□□ 0.32
COL4A1-202ENST00000467182 NRAPQ86VF7 1730 aa17.06■□□□□ 0.32
COL4A1-202ENST00000467182 WDR17Q8IZU2 1322 aa17.05■□□□□ 0.32
COL4A1-202ENST00000467182 E9PSI1 815 aa17.05■□□□□ 0.32
COL4A1-202ENST00000467182 LRRC37A3O60309 1634 aa17.05■□□□□ 0.32
COL4A1-202ENST00000467182 JCADQ9P266 1359 aa17.04■□□□□ 0.32
COL4A1-202ENST00000467182 PKD1L3Q7Z443 1732 aa17.04■□□□□ 0.32
COL4A1-202ENST00000467182 IL16Q14005 1332 aa17.03■□□□□ 0.32
COL4A1-202ENST00000467182 MEGF6O75095 1541 aa17.03■□□□□ 0.32
COL4A1-202ENST00000467182 GAS2L2Q8NHY3 880 aa17.02■□□□□ 0.32
COL4A1-202ENST00000467182 NLRP2Q9NX02 1062 aa17.02■□□□□ 0.32
COL4A1-202ENST00000467182 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.31
COL4A1-202ENST00000467182 NWD2Q9ULI1 1742 aa17.01■□□□□ 0.31
COL4A1-202ENST00000467182 CSB-PGBD3P0DP91 1061 aa17.01■□□□□ 0.31
COL4A1-202ENST00000467182 LMOD3Q0VAK6 560 aa17.01■□□□□ 0.31
COL4A1-202ENST00000467182 THUMPD2Q9BTF0 503 aaKnown RBP17.01■□□□□ 0.31
COL4A1-202ENST00000467182 PARP4Q9UKK3 1724 aaKnown RBP17.01■□□□□ 0.31
COL4A1-202ENST00000467182 ADAMTS7Q9UKP4 1686 aa17.01■□□□□ 0.31
COL4A1-202ENST00000467182 LRP6O75581 1613 aa17■□□□□ 0.31
COL4A1-202ENST00000467182 HSPA1LP34931 641 aa17■□□□□ 0.31
COL4A1-202ENST00000467182 BTG4Q9NY30 223 aa17■□□□□ 0.31
COL4A1-202ENST00000467182 VIRMAQ69YN4 1812 aaKnown RBP17■□□□□ 0.31
COL4A1-202ENST00000467182 CRB1P82279 1406 aa16.99■□□□□ 0.31
COL4A1-202ENST00000467182 ZNF853P0CG23 659 aa16.99■□□□□ 0.31
COL4A1-202ENST00000467182 DCTN1Q14203 1278 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms