RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 ABL2P42684 1182 aa8.5□□□□□ -1.05
VPS13D-203ENST00000466732 WDR4P57081 412 aaKnown RBP8.5□□□□□ -1.05
VPS13D-203ENST00000466732 KLF16Q9BXK1 252 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-203ENST00000466732 COG6Q9Y2V7 657 aa8.5□□□□□ -1.05
VPS13D-203ENST00000466732 PCDHB9Q9Y5E1 797 aa8.5□□□□□ -1.05
VPS13D-203ENST00000466732 CAPN5O15484 640 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-203ENST00000466732 TIMP2P16035 220 aa8.49□□□□□ -1.05
VPS13D-203ENST00000466732 NBPF20Q3BBV1 942 aa8.49□□□□□ -1.05
VPS13D-203ENST00000466732 INTS6LQ5JSJ4 861 aaKnown RBP8.48□□□□□ -1.05
VPS13D-203ENST00000466732 CCDC116Q8IYX3 515 aa8.48□□□□□ -1.05
VPS13D-203ENST00000466732 POM121Q96HA1 1249 aa8.48□□□□□ -1.05
VPS13D-203ENST00000466732 ZNF330Q9Y3S2 320 aaPredicted RBP8.48□□□□□ -1.05
VPS13D-203ENST00000466732 ZIC2O95409 532 aaPredicted RBP8.47□□□□□ -1.05
VPS13D-203ENST00000466732 ITPKCQ96DU7 683 aa8.47□□□□□ -1.05
VPS13D-203ENST00000466732 ESPNB1AK53 854 aa8.46□□□□□ -1.06
VPS13D-203ENST00000466732 UBTFP17480 764 aaKnown RBP8.46□□□□□ -1.06
VPS13D-203ENST00000466732 MCCD1P59942 119 aaPredicted RBP8.46□□□□□ -1.06
VPS13D-203ENST00000466732 PPP1R26Q5T8A7 1209 aaPredicted RBP8.46□□□□□ -1.06
VPS13D-203ENST00000466732 ZFAND3Q9H8U3 227 aa8.46□□□□□ -1.06
VPS13D-203ENST00000466732 ATP13A2Q9NQ11 1180 aa8.46□□□□□ -1.06
VPS13D-203ENST00000466732 EMILIN1Q9Y6C2 1016 aa8.46□□□□□ -1.06
VPS13D-203ENST00000466732 RAB15P59190 212 aa8.45□□□□□ -1.06
VPS13D-203ENST00000466732 DHX9Q08211 1270 aaKnown RBP8.45□□□□□ -1.06
VPS13D-203ENST00000466732 VAC14Q08AM6 782 aa8.45□□□□□ -1.06
VPS13D-203ENST00000466732 POTECB2RU33 542 aa8.44□□□□□ -1.06
VPS13D-203ENST00000466732 RAD21O60216 631 aa8.44□□□□□ -1.06
VPS13D-203ENST00000466732 GIGYF1O75420 1035 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-203ENST00000466732 WASHC4Q2M389 1173 aa8.44□□□□□ -1.06
VPS13D-203ENST00000466732 ZNF592Q92610 1267 aa8.44□□□□□ -1.06
VPS13D-203ENST00000466732 GMPR2Q9P2T1 348 aaKnown RBP8.44□□□□□ -1.06
VPS13D-203ENST00000466732 BMP1P13497 986 aa8.43□□□□□ -1.06
VPS13D-203ENST00000466732 ZNF787Q6DD87 383 aa8.43□□□□□ -1.06
VPS13D-203ENST00000466732 TRIM46Q7Z4K8 759 aa8.43□□□□□ -1.06
VPS13D-203ENST00000466732 SEPT12Q8IYM1 358 aa8.43□□□□□ -1.06
VPS13D-203ENST00000466732 PGPEP1Q9NXJ5 209 aa8.43□□□□□ -1.06
VPS13D-203ENST00000466732 ERVH48-1M5A8F1 160 aa8.42□□□□□ -1.06
VPS13D-203ENST00000466732 EIF4G2P78344 907 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS13D-203ENST00000466732 TMPRSS4Q9NRS4 437 aa8.42□□□□□ -1.06
VPS13D-203ENST00000466732 MRPL14Q6P1L8 145 aaKnown RBP8.4□□□□□ -1.06
VPS13D-203ENST00000466732 WWC1Q8IX03 1113 aa8.4□□□□□ -1.06
VPS13D-203ENST00000466732 MEIOBQ8N635 442 aa8.4□□□□□ -1.06
VPS13D-203ENST00000466732 CLUAP1Q96AJ1 413 aa8.4□□□□□ -1.06
VPS13D-203ENST00000466732 CEP126Q9P2H0 1117 aa8.4□□□□□ -1.06
VPS13D-203ENST00000466732 CBLBQ13191 982 aa8.39□□□□□ -1.07
VPS13D-203ENST00000466732 RNF20Q5VTR2 975 aa8.39□□□□□ -1.07
VPS13D-203ENST00000466732 ZNF784Q8NCA9 323 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-203ENST00000466732 Q6ZVU0 165 aa8.38□□□□□ -1.07
VPS13D-203ENST00000466732 CCDC125Q86Z20 511 aa8.38□□□□□ -1.07
VPS13D-203ENST00000466732 SENP2Q9HC62 589 aa8.38□□□□□ -1.07
VPS13D-203ENST00000466732 C11orf95C9JLR9 678 aaPredicted RBP8.37□□□□□ -1.07
VPS13D-203ENST00000466732 LILRA1O75019 489 aa8.37□□□□□ -1.07
VPS13D-203ENST00000466732 SOX11P35716 441 aa8.37□□□□□ -1.07
VPS13D-203ENST00000466732 SCARF1Q14162 830 aa8.37□□□□□ -1.07
VPS13D-203ENST00000466732 TRIM47Q96LD4 638 aa8.37□□□□□ -1.07
VPS13D-203ENST00000466732 ZFP42Q96MM3 310 aa8.37□□□□□ -1.07
VPS13D-203ENST00000466732 PURBQ96QR8 312 aaKnown RBP8.37□□□□□ -1.07
VPS13D-203ENST00000466732 SNRPBP14678 240 aaKnown RBP8.36□□□□□ -1.07
VPS13D-203ENST00000466732 SEMA3FQ13275 785 aa8.36□□□□□ -1.07
VPS13D-203ENST00000466732 LINC00528Q8N1L1 170 aa8.36□□□□□ -1.07
VPS13D-203ENST00000466732 KIFC2Q96AC6 838 aa8.36□□□□□ -1.07
VPS13D-203ENST00000466732 CYLDQ9NQC7 956 aa8.36□□□□□ -1.07
VPS13D-203ENST00000466732 UPP2O95045 317 aa8.35□□□□□ -1.07
VPS13D-203ENST00000466732 ADD1P35611 737 aaKnown RBP8.35□□□□□ -1.07
VPS13D-203ENST00000466732 C6orf118Q5T5N4 469 aa8.35□□□□□ -1.07
VPS13D-203ENST00000466732 PHTF2Q8N3S3 785 aa8.35□□□□□ -1.07
VPS13D-203ENST00000466732 TSEN34Q9BSV6 310 aaKnown RBP8.35□□□□□ -1.07
VPS13D-203ENST00000466732 PCDHB11Q9Y5F2 797 aa8.35□□□□□ -1.07
VPS13D-203ENST00000466732 POM121CA8CG34 1229 aa8.34□□□□□ -1.07
VPS13D-203ENST00000466732 BMP2P12643 396 aa8.34□□□□□ -1.07
VPS13D-203ENST00000466732 SLFNL1Q499Z3 407 aa8.34□□□□□ -1.07
VPS13D-203ENST00000466732 PROSER2Q86WR7 435 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-203ENST00000466732 FNBP4Q8N3X1 1017 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-203ENST00000466732 TRIM52Q96A61 297 aa8.34□□□□□ -1.07
VPS13D-203ENST00000466732 CCDC85AQ96PX6 553 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-203ENST00000466732 ALG2Q9H553 416 aa8.34□□□□□ -1.07
VPS13D-203ENST00000466732 A6NJR5 290 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 ADH1AP07327 375 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 ERVK-9P63128 1117 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 RNF135Q8IUD6 432 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 AGBL1Q96MI9 1066 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 GTF3C3Q9Y5Q9 886 aa8.33□□□□□ -1.08
VPS13D-203ENST00000466732 SCTRP47872 440 aa8.32□□□□□ -1.08
VPS13D-203ENST00000466732 TSGA10IPQ3SY00 556 aa8.32□□□□□ -1.08
VPS13D-203ENST00000466732 CC2D2BQ6DHV5 1058 aa8.32□□□□□ -1.08
VPS13D-203ENST00000466732 RELBQ01201 579 aa8.31□□□□□ -1.08
VPS13D-203ENST00000466732 KDF1Q8NAX2 398 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-203ENST00000466732 CDCA7Q9BWT1 371 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-203ENST00000466732 SPINT1O43278 529 aa8.3□□□□□ -1.08
VPS13D-203ENST00000466732 ADAMTS19Q8TE59 1207 aa8.3□□□□□ -1.08
VPS13D-203ENST00000466732 CHIC2Q9UKJ5 165 aa8.3□□□□□ -1.08
VPS13D-203ENST00000466732 DOLKQ9UPQ8 538 aa8.3□□□□□ -1.08
VPS13D-203ENST00000466732 PIK3CDO00329 1044 aa8.29□□□□□ -1.08
VPS13D-203ENST00000466732 PTGIRP43119 386 aa8.29□□□□□ -1.08
VPS13D-203ENST00000466732 OSBPL3Q9H4L5 887 aa8.29□□□□□ -1.08
VPS13D-203ENST00000466732 ZNF395Q9H8N7 513 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-203ENST00000466732 SOS2Q07890 1332 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-203ENST00000466732 ATP5J2-PTCD1G3V325 749 aa8.28□□□□□ -1.08
VPS13D-203ENST00000466732 HDGFL1Q5TGJ6 251 aa8.28□□□□□ -1.08
VPS13D-203ENST00000466732 PLPP7Q8NBV4 271 aa8.28□□□□□ -1.08
VPS13D-203ENST00000466732 ESF1Q9H501 851 aaKnown RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms