RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ARHGEF25Q86VW2 580 aa16.96■□□□□ 0.31
USP40-210ENST00000454354 TERF2IPQ9NYB0 399 aa16.96■□□□□ 0.31
USP40-210ENST00000454354 PEAK1Q9H792 1746 aa16.96■□□□□ 0.3
USP40-210ENST00000454354 OVOS2A0A0J9YW53 1432 aa16.96■□□□□ 0.3
USP40-210ENST00000454354 OVOS2Q6IE36 1432 aa16.96■□□□□ 0.3
USP40-210ENST00000454354 TCP11L2Q8N4U5 519 aa16.95■□□□□ 0.3
USP40-210ENST00000454354 SBF2Q86WG5 1849 aa16.95■□□□□ 0.3
USP40-210ENST00000454354 KIF20BQ96Q89 1820 aa16.95■□□□□ 0.3
USP40-210ENST00000454354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.94■□□□□ 0.32e-6■□□□□ 9
USP40-210ENST00000454354 USP35Q9P2H5 1018 aa16.94■□□□□ 0.3
USP40-210ENST00000454354 DISP2A7MBM2 1401 aa16.94■□□□□ 0.3
USP40-210ENST00000454354 WDR17Q8IZU2 1322 aa16.94■□□□□ 0.3
USP40-210ENST00000454354 ZBTB7CA1YPR0 619 aa16.93■□□□□ 0.3
USP40-210ENST00000454354 SF3B2Q13435 895 aaKnown RBP16.93■□□□□ 0.3
USP40-210ENST00000454354 NME9Q86XW9 330 aa16.93■□□□□ 0.3
USP40-210ENST00000454354 AXIN2Q9Y2T1 843 aa16.93■□□□□ 0.3
USP40-210ENST00000454354 FAM208AQ9UK61 1670 aaKnown RBP16.93■□□□□ 0.3
USP40-210ENST00000454354 ANKRD36BQ8N2N9 1353 aa16.92■□□□□ 0.3
USP40-210ENST00000454354 TMF1P82094 1093 aa16.92■□□□□ 0.3
USP40-210ENST00000454354 ZRANB1Q9UGI0 708 aa16.92■□□□□ 0.3
USP40-210ENST00000454354 DEFB132Q7Z7B7 95 aa16.91■□□□□ 0.3
USP40-210ENST00000454354 RREB1Q92766 1687 aa16.91■□□□□ 0.3
USP40-210ENST00000454354 SOX12O15370 315 aa16.9■□□□□ 0.3
USP40-210ENST00000454354 FAM182BQ5T319 152 aa16.9■□□□□ 0.3
USP40-210ENST00000454354 RGPD3A6NKT7 1758 aaPredicted RBP16.89■□□□□ 0.3
USP40-210ENST00000454354 RGPD4Q7Z3J3 1758 aa16.89■□□□□ 0.3
USP40-210ENST00000454354 FAM196AQ6ZSG2 479 aa16.89■□□□□ 0.29
USP40-210ENST00000454354 SRCAPQ6ZRS2 3230 aa16.88■□□□□ 0.29
USP40-210ENST00000454354 BAG6P46379 1132 aa16.88■□□□□ 0.29
USP40-210ENST00000454354 TOM1L2Q6ZVM7 507 aa16.88■□□□□ 0.29
USP40-210ENST00000454354 PDE3BQ13370 1112 aa16.87■□□□□ 0.29
USP40-210ENST00000454354 CDCA8Q53HL2 280 aa16.87■□□□□ 0.29
USP40-210ENST00000454354 CARD10Q9BWT7 1032 aa16.86■□□□□ 0.29
USP40-210ENST00000454354 NUP188Q5SRE5 1749 aa16.86■□□□□ 0.29
USP40-210ENST00000454354 ERBB3P21860 1342 aa16.86■□□□□ 0.29
USP40-210ENST00000454354 CCDC7Q96M83 1385 aa16.86■□□□□ 0.29
USP40-210ENST00000454354 OVOS2A0A0G2JMS6 1433 aa16.86■□□□□ 0.29
USP40-210ENST00000454354 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
USP40-210ENST00000454354 CDCA7Q9BWT1 371 aaPredicted RBP16.85■□□□□ 0.29
USP40-210ENST00000454354 RGPD2P0DJD1 1756 aa16.84■□□□□ 0.29
USP40-210ENST00000454354 C11orf95C9JLR9 678 aaPredicted RBP16.83■□□□□ 0.28
USP40-210ENST00000454354 BCL9O00512 1426 aa16.83■□□□□ 0.28
USP40-210ENST00000454354 CSB-PGBD3P0DP91 1061 aa16.83■□□□□ 0.28
USP40-210ENST00000454354 PARD3Q8TEW0 1356 aa16.83■□□□□ 0.28
USP40-210ENST00000454354 ANKRD26Q9UPS8 1709 aa16.82■□□□□ 0.28
USP40-210ENST00000454354 TNS2Q63HR2 1409 aa16.82■□□□□ 0.28
USP40-210ENST00000454354 TRIM37O94972 964 aa16.82■□□□□ 0.28
USP40-210ENST00000454354 DDB1Q16531 1140 aa16.82■□□□□ 0.28
USP40-210ENST00000454354 COG3Q96JB2 828 aa16.82■□□□□ 0.28
USP40-210ENST00000454354 LRP5O75197 1615 aa16.81■□□□□ 0.28
USP40-210ENST00000454354 EN1Q05925 392 aaPredicted RBP16.81■□□□□ 0.28
USP40-210ENST00000454354 RTL1A6NKG5 1358 aa16.8■□□□□ 0.28
USP40-210ENST00000454354 NHSQ6T4R5 1651 aa16.79■□□□□ 0.28
USP40-210ENST00000454354 FYB1O15117 783 aa16.79■□□□□ 0.28
USP40-210ENST00000454354 IP6K1Q92551 441 aa16.79■□□□□ 0.28
USP40-210ENST00000454354 CAMKK2Q96RR4 588 aa16.79■□□□□ 0.28
USP40-210ENST00000454354 MAP3K19Q56UN5 1328 aa16.78■□□□□ 0.28
USP40-210ENST00000454354 ANKRD24Q8TF21 1146 aa16.78■□□□□ 0.28
USP40-210ENST00000454354 SHANK3Q9BYB0 1731 aa16.78■□□□□ 0.28
USP40-210ENST00000454354 NSD3Q9BZ95 1437 aa16.78■□□□□ 0.28
USP40-210ENST00000454354 MAP2P11137 1827 aaKnown RBP16.77■□□□□ 0.28
USP40-210ENST00000454354 MARCH10Q8NA82 808 aaPredicted RBP16.77■□□□□ 0.28
USP40-210ENST00000454354 APBA3O96018 575 aa16.76■□□□□ 0.27
USP40-210ENST00000454354 EIF4G2P78344 907 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP40-210ENST00000454354 EZH2Q15910 746 aaKnown RBP16.76■□□□□ 0.27
USP40-210ENST00000454354 NLRP2Q9NX02 1062 aa16.76■□□□□ 0.27
USP40-210ENST00000454354 HOXC9P31274 260 aa16.75■□□□□ 0.27
USP40-210ENST00000454354 CARD14Q9BXL6 1004 aa16.75■□□□□ 0.27
USP40-210ENST00000454354 GGNBP2Q9H3C7 697 aa16.75■□□□□ 0.27
USP40-210ENST00000454354 HSPA5P11021 654 aaKnown RBP16.74■□□□□ 0.27
USP40-210ENST00000454354 KAT6BQ8WYB5 2073 aa16.74■□□□□ 0.27
USP40-210ENST00000454354 BTAF1O14981 1849 aa16.73■□□□□ 0.27
USP40-210ENST00000454354 EXOC5O00471 708 aa16.73■□□□□ 0.27
USP40-210ENST00000454354 IL2RBP14784 551 aa16.73■□□□□ 0.27
USP40-210ENST00000454354 KIF24Q5T7B8 1368 aa16.73■□□□□ 0.27
USP40-210ENST00000454354 FBLN1P23142 703 aa16.72■□□□□ 0.27
USP40-210ENST00000454354 AMPHP49418 695 aa16.72■□□□□ 0.27
USP40-210ENST00000454354 BCL11BQ9C0K0 894 aaPredicted RBP16.71■□□□□ 0.27
USP40-210ENST00000454354 FLT4P35916 1363 aa16.7■□□□□ 0.26
USP40-210ENST00000454354 PSDA5PKW4 1024 aaPredicted RBP16.7■□□□□ 0.26
USP40-210ENST00000454354 PLSCR1O15162 318 aa16.7■□□□□ 0.26
USP40-210ENST00000454354 RRS1Q15050 365 aaKnown RBP16.7■□□□□ 0.26
USP40-210ENST00000454354 DOT1LQ8TEK3 1739 aa16.7■□□□□ 0.26
USP40-210ENST00000454354 SMG6Q86US8 1419 aaKnown RBP16.7■□□□□ 0.26
USP40-210ENST00000454354 INSRP06213 1382 aa16.69■□□□□ 0.26
USP40-210ENST00000454354 LTV1Q96GA3 475 aaPredicted RBP16.69■□□□□ 0.26
USP40-210ENST00000454354 MEGF6O75095 1541 aa16.69■□□□□ 0.26
USP40-210ENST00000454354 CGNL1Q0VF96 1302 aa16.69■□□□□ 0.26
USP40-210ENST00000454354 PTF1AQ7RTS3 328 aa16.68■□□□□ 0.26
USP40-210ENST00000454354 PKD1L3Q7Z443 1732 aa16.67■□□□□ 0.26
USP40-210ENST00000454354 R3HDM1Q15032 1099 aaKnown RBP16.67■□□□□ 0.26
USP40-210ENST00000454354 CASZ1Q86V15 1759 aa16.66■□□□□ 0.26
USP40-210ENST00000454354 NCAPD2Q15021 1401 aa16.66■□□□□ 0.26
USP40-210ENST00000454354 PAPPAQ13219 1627 aa16.65■□□□□ 0.26
USP40-210ENST00000454354 HSP90AB2PQ58FF8 381 aa16.64■□□□□ 0.25
USP40-210ENST00000454354 POLR3GLQ9BT43 218 aa16.64■□□□□ 0.25
USP40-210ENST00000454354 LY75O60449 1722 aa16.64■□□□□ 0.25
USP40-210ENST00000454354 NSD2O96028 1365 aa16.64■□□□□ 0.25
USP40-210ENST00000454354 NBPF14Q5TI25 921 aa16.63■□□□□ 0.25
USP40-210ENST00000454354 NBPF6Q5VWK0 638 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms