RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 PEAK1Q9H792 1746 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 FLT4P35916 1363 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 BLMP54132 1417 aaPredicted RBP16.13■□□□□ 0.17
LINC00339-205ENST00000452322 NRAPQ86VF7 1730 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.13■□□□□ 0.17
LINC00339-205ENST00000452322 AMPHP49418 695 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 RALBP1Q15311 655 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 IP6K1Q92551 441 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 BTG4Q9NY30 223 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 EMILIN1Q9Y6C2 1016 aa16.13■□□□□ 0.17
LINC00339-205ENST00000452322 AFF2P51816 1311 aa16.12■□□□□ 0.17
LINC00339-205ENST00000452322 BCL9LQ86UU0 1499 aa16.12■□□□□ 0.17
LINC00339-205ENST00000452322 HOXC9P31274 260 aa16.12■□□□□ 0.17
LINC00339-205ENST00000452322 COL5A2P05997 1499 aaPredicted RBP16.11■□□□□ 0.17
LINC00339-205ENST00000452322 USP21Q9UK80 565 aa16.11■□□□□ 0.17
LINC00339-205ENST00000452322 AXIN2Q9Y2T1 843 aa16.11■□□□□ 0.17
LINC00339-205ENST00000452322 RGPD5Q99666 1765 aa16.11■□□□□ 0.17
LINC00339-205ENST00000452322 CDK12Q9NYV4 1490 aaPredicted RBP16.1■□□□□ 0.17
LINC00339-205ENST00000452322 UNC5CLQ8IV45 518 aa16.1■□□□□ 0.17
LINC00339-205ENST00000452322 PRKRIP1Q9H875 184 aaPredicted RBP16.1■□□□□ 0.17
LINC00339-205ENST00000452322 INSRP06213 1382 aa16.1■□□□□ 0.17
LINC00339-205ENST00000452322 PPM1GO15355 546 aaPredicted RBP16.09■□□□□ 0.17
LINC00339-205ENST00000452322 PPP2R1AP30153 589 aa16.09■□□□□ 0.17
LINC00339-205ENST00000452322 ZNF772Q68DY9 489 aaPredicted RBP16.09■□□□□ 0.17
LINC00339-205ENST00000452322 MSH5O43196 834 aa16.08■□□□□ 0.16
LINC00339-205ENST00000452322 ERBB3P21860 1342 aa16.08■□□□□ 0.16
LINC00339-205ENST00000452322 MTHFSP49914 203 aa16.08■□□□□ 0.16
LINC00339-205ENST00000452322 HSP90AB2PQ58FF8 381 aa16.07■□□□□ 0.16
LINC00339-205ENST00000452322 FAM208AQ9UK61 1670 aaKnown RBP16.06■□□□□ 0.16
LINC00339-205ENST00000452322 ATRNO75882 1429 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 WDR17Q8IZU2 1322 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 MYBBP1AQ9BQG0 1328 aaKnown RBP16.06■□□□□ 0.16
LINC00339-205ENST00000452322 ANP32CO43423 234 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 EVA1CP58658 441 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 ANKRD24Q8TF21 1146 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 STRN4Q9NRL3 753 aa16.06■□□□□ 0.16
LINC00339-205ENST00000452322 TRPC5Q9UL62 973 aaPredicted RBP16.06■□□□□ 0.16
LINC00339-205ENST00000452322 VPS72Q15906 364 aa16.05■□□□□ 0.16
LINC00339-205ENST00000452322 RGS17Q9UGC6 210 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-205ENST00000452322 CRB1P82279 1406 aa16.05■□□□□ 0.16
LINC00339-205ENST00000452322 CSB-PGBD3P0DP91 1061 aa16.03■□□□□ 0.16
LINC00339-205ENST00000452322 LARP1Q6PKG0 1096 aaKnown RBP16.03■□□□□ 0.16
LINC00339-205ENST00000452322 COL3A1P02461 1466 aaPredicted RBP16.03■□□□□ 0.16
LINC00339-205ENST00000452322 LTV1Q96GA3 475 aaPredicted RBP16.02■□□□□ 0.16
LINC00339-205ENST00000452322 QTRT2Q9H974 415 aaKnown RBP16.02■□□□□ 0.16
LINC00339-205ENST00000452322 SPATA31A5Q5VU36 1347 aa16.02■□□□□ 0.15
LINC00339-205ENST00000452322 SPATA31A7Q8IWB4 1347 aa16.02■□□□□ 0.15
LINC00339-205ENST00000452322 EIF4A2Q14240 407 aaKnown RBP16.01■□□□□ 0.15
LINC00339-205ENST00000452322 DIEXFQ68CQ4 756 aaKnown RBP16.01■□□□□ 0.15
LINC00339-205ENST00000452322 TOM1L2Q6ZVM7 507 aa16.01■□□□□ 0.15
LINC00339-205ENST00000452322 CFAP53Q96M91 514 aa16.01■□□□□ 0.15
LINC00339-205ENST00000452322 SPATA31A1Q5TZJ5 1347 aa16.01■□□□□ 0.15
LINC00339-205ENST00000452322 GJD4Q96KN9 370 aaPredicted RBP16■□□□□ 0.15
LINC00339-205ENST00000452322 CARD10Q9BWT7 1032 aa16■□□□□ 0.15
LINC00339-205ENST00000452322 CCDC9Q9Y3X0 531 aaKnown RBP16■□□□□ 0.15
LINC00339-205ENST00000452322 GLI3P10071 1580 aa16■□□□□ 0.15
LINC00339-205ENST00000452322 RGPD2P0DJD1 1756 aa15.99■□□□□ 0.15
LINC00339-205ENST00000452322 DIAPH1O60610 1272 aaKnown RBP15.99■□□□□ 0.15
LINC00339-205ENST00000452322 IL13P35225 146 aa15.99■□□□□ 0.15
LINC00339-205ENST00000452322 POTEAQ6S8J7 498 aa15.99■□□□□ 0.15
LINC00339-205ENST00000452322 NLRP2Q9NX02 1062 aa15.99■□□□□ 0.15
LINC00339-205ENST00000452322 THRAP3Q9Y2W1 955 aaKnown RBP15.99■□□□□ 0.15
LINC00339-205ENST00000452322 NCAPD2Q15021 1401 aa15.98■□□□□ 0.15
LINC00339-205ENST00000452322 RBM6P78332 1123 aaKnown RBP15.98■□□□□ 0.15
LINC00339-205ENST00000452322 NBPF6Q5VWK0 638 aa15.98■□□□□ 0.15
LINC00339-205ENST00000452322 TCP11L2Q8N4U5 519 aa15.98■□□□□ 0.15
LINC00339-205ENST00000452322 NBPF4Q96M43 638 aa15.98■□□□□ 0.15
LINC00339-205ENST00000452322 RGPD1P0DJD0 1748 aa15.98■□□□□ 0.15
LINC00339-205ENST00000452322 IGSF1Q8N6C5 1336 aa15.97■□□□□ 0.15
LINC00339-205ENST00000452322 EYA1Q99502 592 aa15.97■□□□□ 0.15
LINC00339-205ENST00000452322 USP35Q9P2H5 1018 aa15.97■□□□□ 0.15
LINC00339-205ENST00000452322 WNK3Q9BYP7 1800 aa15.96■□□□□ 0.15
LINC00339-205ENST00000452322 BARGINQ6ZT62 677 aa15.96■□□□□ 0.15
LINC00339-205ENST00000452322 RXRBP28702 533 aa15.95■□□□□ 0.14
LINC00339-205ENST00000452322 NUDCQ9Y266 331 aa15.95■□□□□ 0.14
LINC00339-205ENST00000452322 DISP2A7MBM2 1401 aa15.94■□□□□ 0.14
LINC00339-205ENST00000452322 THSD7AQ9UPZ6 1657 aa15.94■□□□□ 0.14
LINC00339-205ENST00000452322 ONECUT3O60422 494 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-205ENST00000452322 FAM98CQ17RN3 349 aaKnown RBP15.93■□□□□ 0.14
LINC00339-205ENST00000452322 USHBP1Q8N6Y0 703 aa15.93■□□□□ 0.14
LINC00339-205ENST00000452322 CDCA7Q9BWT1 371 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-205ENST00000452322 KDRP35968 1356 aa15.92■□□□□ 0.14
LINC00339-205ENST00000452322 PARP4Q9UKK3 1724 aaKnown RBP15.91■□□□□ 0.14
LINC00339-205ENST00000452322 U2SURPO15042 1029 aaKnown RBP15.91■□□□□ 0.14
LINC00339-205ENST00000452322 IL2RBP14784 551 aa15.91■□□□□ 0.14
LINC00339-205ENST00000452322 PLEKHG2Q9H7P9 1386 aa15.91■□□□□ 0.14
LINC00339-205ENST00000452322 RGS12O14924 1447 aa15.9■□□□□ 0.14
LINC00339-205ENST00000452322 SULT6B1Q6IMI4 303 aa15.9■□□□□ 0.14
LINC00339-205ENST00000452322 MEGF6O75095 1541 aa15.9■□□□□ 0.14
LINC00339-205ENST00000452322 LRRC37A3O60309 1634 aa15.9■□□□□ 0.14
LINC00339-205ENST00000452322 AEBP1Q8IUX7 1158 aa15.89■□□□□ 0.13
LINC00339-205ENST00000452322 RAPGEF4Q8WZA2 1011 aa15.89■□□□□ 0.13
LINC00339-205ENST00000452322 OVOS2A0A0G2JMS6 1433 aa15.89■□□□□ 0.13
LINC00339-205ENST00000452322 U2AF1L5P0DN76 240 aaPredicted RBP15.88■□□□□ 0.13
LINC00339-205ENST00000452322 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
LINC00339-205ENST00000452322 U2AF1Q01081 240 aaKnown RBP eCLIP15.88■□□□□ 0.13
LINC00339-205ENST00000452322 CCDC184Q52MB2 194 aa15.88■□□□□ 0.13
LINC00339-205ENST00000452322 SEPT12Q8IYM1 358 aa15.88■□□□□ 0.13
LINC00339-205ENST00000452322 MRS2Q9HD23 443 aa15.88■□□□□ 0.13
LINC00339-205ENST00000452322 A0A0G2JS52 829 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms