RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OVOS2Q6IE36 1432 aa18.88■□□□□ 0.61
HMGB3-204ENST00000448905 NRKQ7Z2Y5 1582 aa18.88■□□□□ 0.61
HMGB3-204ENST00000448905 KCNQ2O43526 872 aa18.87■□□□□ 0.61
HMGB3-204ENST00000448905 KTN1Q86UP2 1357 aaKnown RBP18.87■□□□□ 0.61
HMGB3-204ENST00000448905 CARD11Q9BXL7 1154 aa18.87■□□□□ 0.61
HMGB3-204ENST00000448905 HDGFL2Q7Z4V5 671 aaPredicted RBP18.86■□□□□ 0.61
HMGB3-204ENST00000448905 TMC1Q8TDI8 760 aa18.86■□□□□ 0.61
HMGB3-204ENST00000448905 LMO7Q8WWI1 1683 aa18.85■□□□□ 0.61
HMGB3-204ENST00000448905 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.85■□□□□ 0.61
HMGB3-204ENST00000448905 MARCH10Q8NA82 808 aaPredicted RBP18.85■□□□□ 0.61
HMGB3-204ENST00000448905 NUP188Q5SRE5 1749 aa18.84■□□□□ 0.61
HMGB3-204ENST00000448905 RREB1Q92766 1687 aa18.84■□□□□ 0.61
HMGB3-204ENST00000448905 SLC24A1O60721 1099 aa18.83■□□□□ 0.6
HMGB3-204ENST00000448905 TERF2IPQ9NYB0 399 aa18.83■□□□□ 0.6
HMGB3-204ENST00000448905 CPSF1Q10570 1443 aaKnown RBP18.82■□□□□ 0.6
HMGB3-204ENST00000448905 PTF1AQ7RTS3 328 aa18.81■□□□□ 0.6
HMGB3-204ENST00000448905 NLRP2Q9NX02 1062 aa18.81■□□□□ 0.6
HMGB3-204ENST00000448905 CCDC7Q96M83 1385 aa18.81■□□□□ 0.6
HMGB3-204ENST00000448905 SLIT3O75094 1523 aa18.8■□□□□ 0.6
HMGB3-204ENST00000448905 PUS7Q96PZ0 661 aaKnown RBP18.8■□□□□ 0.6
HMGB3-204ENST00000448905 STK32BQ9NY57 414 aa18.79■□□□□ 0.6
HMGB3-204ENST00000448905 BCL9O00512 1426 aa18.78■□□□□ 0.6
HMGB3-204ENST00000448905 PROM2Q8N271 834 aa18.78■□□□□ 0.6
HMGB3-204ENST00000448905 SLC12A5Q9H2X9 1139 aa18.78■□□□□ 0.6
HMGB3-204ENST00000448905 PARP4Q9UKK3 1724 aaKnown RBP18.77■□□□□ 0.6
HMGB3-204ENST00000448905 TXNRD1Q16881 649 aa18.77■□□□□ 0.6
HMGB3-204ENST00000448905 NME9Q86XW9 330 aa18.77■□□□□ 0.6
HMGB3-204ENST00000448905 USP31Q70CQ4 1352 aa18.77■□□□□ 0.6
HMGB3-204ENST00000448905 SBNO2Q9Y2G9 1366 aa18.77■□□□□ 0.6
HMGB3-204ENST00000448905 IL2RBP14784 551 aa18.76■□□□□ 0.59
HMGB3-204ENST00000448905 YY1P25490 414 aa18.76■□□□□ 0.59
HMGB3-204ENST00000448905 QRICH2Q9H0J4 1663 aa18.76■□□□□ 0.59
HMGB3-204ENST00000448905 SBF2Q86WG5 1849 aa18.75■□□□□ 0.59
HMGB3-204ENST00000448905 ANKRD24Q8TF21 1146 aa18.75■□□□□ 0.59
HMGB3-204ENST00000448905 TONSLQ96HA7 1378 aa18.75■□□□□ 0.59
HMGB3-204ENST00000448905 SLC15A2Q16348 729 aa18.74■□□□□ 0.59
HMGB3-204ENST00000448905 PDGFDQ9GZP0 370 aaPredicted RBP18.74■□□□□ 0.59
HMGB3-204ENST00000448905 ANO8Q9HCE9 1232 aaPredicted RBP18.74■□□□□ 0.59
HMGB3-204ENST00000448905 PEAK1Q9H792 1746 aa18.74■□□□□ 0.59
HMGB3-204ENST00000448905 RGPD5Q99666 1765 aa18.73■□□□□ 0.59
HMGB3-204ENST00000448905 COL18A1P39060 1754 aa18.73■□□□□ 0.59
HMGB3-204ENST00000448905 ERBB3P21860 1342 aa18.73■□□□□ 0.59
HMGB3-204ENST00000448905 NINLQ9Y2I6 1382 aa18.72■□□□□ 0.59
HMGB3-204ENST00000448905 ZBTB7AO95365 584 aa18.72■□□□□ 0.59
HMGB3-204ENST00000448905 LRRC37A3O60309 1634 aa18.71■□□□□ 0.59
HMGB3-204ENST00000448905 PIK3C2AO00443 1686 aa18.71■□□□□ 0.59
HMGB3-204ENST00000448905 ACSBG1Q96GR2 724 aa18.71■□□□□ 0.59
HMGB3-204ENST00000448905 TRPM1Q7Z4N2 1603 aa18.71■□□□□ 0.58
HMGB3-204ENST00000448905 IP6K1Q92551 441 aa18.7■□□□□ 0.58
HMGB3-204ENST00000448905 COG3Q96JB2 828 aa18.7■□□□□ 0.58
HMGB3-204ENST00000448905 ATF5Q9Y2D1 282 aaPredicted RBP18.7■□□□□ 0.58
HMGB3-204ENST00000448905 EDC4Q6P2E9 1401 aaKnown RBP18.68■□□□□ 0.58
HMGB3-204ENST00000448905 DDX54Q8TDD1 881 aaKnown RBP18.68■□□□□ 0.58
HMGB3-204ENST00000448905 MTFR1LQ9H019 292 aa18.68■□□□□ 0.58
HMGB3-204ENST00000448905 ST20-MTHFSA0A0A6YYL1 179 aa18.67■□□□□ 0.58
HMGB3-204ENST00000448905 AMPHP49418 695 aa18.66■□□□□ 0.58
HMGB3-204ENST00000448905 LTV1Q96GA3 475 aaPredicted RBP18.66■□□□□ 0.58
HMGB3-204ENST00000448905 WNK3Q9BYP7 1800 aa18.65■□□□□ 0.58
HMGB3-204ENST00000448905 TNS2Q63HR2 1409 aa18.65■□□□□ 0.58
HMGB3-204ENST00000448905 AKAP12Q02952 1782 aa18.64■□□□□ 0.57
HMGB3-204ENST00000448905 PTGER2P43116 358 aa18.64■□□□□ 0.57
HMGB3-204ENST00000448905 NFAT5O94916 1531 aa18.64■□□□□ 0.57
HMGB3-204ENST00000448905 ABCC6O95255 1503 aa18.64■□□□□ 0.57
HMGB3-204ENST00000448905 CASZ1Q86V15 1759 aa18.63■□□□□ 0.57
HMGB3-204ENST00000448905 SLC27A3Q5K4L6 730 aa18.63■□□□□ 0.57
HMGB3-204ENST00000448905 A0A1W2PP64 1363 aa18.63■□□□□ 0.57
HMGB3-204ENST00000448905 TESK2Q96S53 571 aa18.62■□□□□ 0.57
HMGB3-204ENST00000448905 SYT17Q9BSW7 474 aa18.62■□□□□ 0.57
HMGB3-204ENST00000448905 RGPD3A6NKT7 1758 aaPredicted RBP18.62■□□□□ 0.57
HMGB3-204ENST00000448905 RGPD4Q7Z3J3 1758 aa18.62■□□□□ 0.57
HMGB3-204ENST00000448905 CD163L1Q9NR16 1453 aa18.61■□□□□ 0.57
HMGB3-204ENST00000448905 TMF1P82094 1093 aa18.61■□□□□ 0.57
HMGB3-204ENST00000448905 CDCA8Q53HL2 280 aa18.61■□□□□ 0.57
HMGB3-204ENST00000448905 SYTL4Q96C24 671 aaPredicted RBP18.61■□□□□ 0.57
HMGB3-204ENST00000448905 ARXQ96QS3 562 aa18.61■□□□□ 0.57
HMGB3-204ENST00000448905 FHDC1Q9C0D6 1143 aaPredicted RBP18.61■□□□□ 0.57
HMGB3-204ENST00000448905 ZCRB1Q8TBF4 217 aaKnown RBP18.6■□□□□ 0.57
HMGB3-204ENST00000448905 HMGB2P26583 209 aaKnown RBP18.59■□□□□ 0.57
HMGB3-204ENST00000448905 HOXC9P31274 260 aa18.59■□□□□ 0.57
HMGB3-204ENST00000448905 SLC16A10Q8TF71 515 aa18.59■□□□□ 0.57
HMGB3-204ENST00000448905 MAP3K19Q56UN5 1328 aa18.58■□□□□ 0.57
HMGB3-204ENST00000448905 MYOM1P52179 1685 aa18.58■□□□□ 0.57
HMGB3-204ENST00000448905 PRIM1P49642 420 aaKnown RBP18.58■□□□□ 0.56
HMGB3-204ENST00000448905 LRRC4BQ9NT99 713 aa18.57■□□□□ 0.56
HMGB3-204ENST00000448905 TFCP2L1Q9NZI6 479 aa18.57■□□□□ 0.56
HMGB3-204ENST00000448905 POLD1P28340 1107 aa18.56■□□□□ 0.56
HMGB3-204ENST00000448905 RAPGEF4Q8WZA2 1011 aa18.56■□□□□ 0.56
HMGB3-204ENST00000448905 FYB1O15117 783 aa18.55■□□□□ 0.56
HMGB3-204ENST00000448905 SGIP1Q9BQI5 828 aa18.55■□□□□ 0.56
HMGB3-204ENST00000448905 CGNL1Q0VF96 1302 aa18.54■□□□□ 0.56
HMGB3-204ENST00000448905 FBLN1P23142 703 aa18.54■□□□□ 0.56
HMGB3-204ENST00000448905 AKT1S1Q96B36 256 aa18.54■□□□□ 0.56
HMGB3-204ENST00000448905 KAT6BQ8WYB5 2073 aa18.54■□□□□ 0.56
HMGB3-204ENST00000448905 ZNF827Q17R98 1081 aa18.53■□□□□ 0.56
HMGB3-204ENST00000448905 GGNBP2Q9H3C7 697 aa18.53■□□□□ 0.56
HMGB3-204ENST00000448905 ANKRD36BQ8N2N9 1353 aa18.53■□□□□ 0.56
HMGB3-204ENST00000448905 TATP17735 454 aaPredicted RBP18.52■□□□□ 0.56
HMGB3-204ENST00000448905 TRIM26Q12899 539 aaPredicted RBP18.52■□□□□ 0.56
HMGB3-204ENST00000448905 RRS1Q15050 365 aaKnown RBP18.52■□□□□ 0.56
HMGB3-204ENST00000448905 MON2Q7Z3U7 1717 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms