RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PPP1R14CQ8TAE6 165 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 HIP1O00291 1037 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 CCDC27Q2M243 656 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 PPFIBP2Q8ND30 876 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 FMNL2Q96PY5 1086 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 PAFAH1B1P43034 410 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 RBM10P98175 930 aaKnown RBP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 CWC25Q9NXE8 425 aaPredicted RBP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 DDX19BQ9UMR2 479 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 SMTNL1A8MU46 457 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 SARNPP82979 210 aaKnown RBP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 SPA17Q15506 151 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 CGNQ9P2M7 1197 aaKnown RBP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 KIF5BP33176 963 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 CFAP58Q5T655 872 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 WDR63Q8IWG1 891 aa10.46□□□□□ -0.73
NIPBL-202ENST00000448238 TTC36A6NLP5 189 aa10.46□□□□□ -0.73
NIPBL-202ENST00000448238 CHMP7Q8WUX9 453 aaPredicted RBP10.46□□□□□ -0.73
NIPBL-202ENST00000448238 PRPF31Q8WWY3 499 aaKnown RBP10.46□□□□□ -0.73
NIPBL-202ENST00000448238 LARP1Q6PKG0 1096 aaKnown RBP10.46□□□□□ -0.73
NIPBL-202ENST00000448238 GMNNO75496 209 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 CNGA1P29973 690 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 CCDC150Q8NCX0 1101 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 TPD52P55327 224 aaPredicted RBP10.46□□□□□ -0.74
NIPBL-202ENST00000448238 DCAF11Q8TEB1 546 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 PIBF1Q8WXW3 757 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 C1orf141Q5JVX7 400 aa10.46□□□□□ -0.74
NIPBL-202ENST00000448238 ZKSCAN2Q63HK3 967 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 SMARCC1Q92922 1105 aaPredicted RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 NGEFQ8N5V2 710 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 MAP3K7CLP57077 242 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 ROCK2O75116 1388 aaKnown RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 FGFR1OPO95684 399 aaKnown RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 LUC7L2Q9Y383 392 aaKnown RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 AEBP2Q6ZN18 517 aaPredicted RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 KIF5AQ12840 1032 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 ANKRD1Q15327 319 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 GOPCQ9HD26 462 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 CLUAP1Q96AJ1 413 aa10.45□□□□□ -0.74
NIPBL-202ENST00000448238 RSRC1Q96IZ7 334 aaKnown RBP10.45□□□□□ -0.74
NIPBL-202ENST00000448238 TRIM22Q8IYM9 498 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 RNF214Q8ND24 703 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 TNNT1P13805 278 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 AMPHP49418 695 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 FAM177A1Q8N128 213 aaPredicted RBP10.44□□□□□ -0.74
NIPBL-202ENST00000448238 SPC24Q8NBT2 197 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 NCAPGQ9BPX3 1015 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 TRAK2O60296 914 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 STK38Q15208 465 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 CCDC14Q49A88 953 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 TTC14Q96N46 770 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 C10orf67Q8IYJ2 551 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 AIMP1Q12904 312 aaKnown RBP10.44□□□□□ -0.74
NIPBL-202ENST00000448238 KCNH8Q96L42 1107 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 PLVAPQ9BX97 442 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 STMN4Q9H169 189 aaPredicted RBP10.44□□□□□ -0.74
NIPBL-202ENST00000448238 TSHZ2Q9NRE2 1034 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 A0A1B0GUA9 196 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 CTNNA2P26232 953 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 WHAMMQ8TF30 809 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 TNMDQ9H2S6 317 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 CLIP1P30622 1438 aa10.44□□□□□ -0.74
NIPBL-202ENST00000448238 USO1O60763 962 aaKnown RBP10.43□□□□□ -0.74
NIPBL-202ENST00000448238 ZNF853P0CG23 659 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 EIF5P55010 431 aaKnown RBP10.43□□□□□ -0.74
NIPBL-202ENST00000448238 CASQ1P31415 396 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 TTC5Q8N0Z6 440 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 VCX3BQ9H321 246 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 TRIM35Q9UPQ4 493 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 ACTN2P35609 894 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 CEP57L1Q8IYX8 460 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 SMC1BQ8NDV3 1235 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 ZC4H2Q9NQZ6 224 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 RABGAP1Q9Y3P9 1069 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 DIAPH1O60610 1272 aaKnown RBP10.43□□□□□ -0.74
NIPBL-202ENST00000448238 PSMC4P43686 418 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 SATB1Q01826 763 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 MSL1Q68DK7 614 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 IQCGQ9H095 443 aaKnown RBP10.43□□□□□ -0.74
NIPBL-202ENST00000448238 TBC1D2BQ9UPU7 963 aa10.43□□□□□ -0.74
NIPBL-202ENST00000448238 MXRA7P84157 204 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 KIF4BQ2VIQ3 1234 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 PRR16Q569H4 304 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 CCDC155Q8N6L0 562 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 CASQ2O14958 399 aaPredicted RBP10.42□□□□□ -0.74
NIPBL-202ENST00000448238 PTPN14Q15678 1187 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 ODF2LQ9ULJ1 636 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 MATR3P43243 847 aaKnown RBP eCLIP10.42□□□□□ -0.744e-7■■■■□ 25.8
NIPBL-202ENST00000448238 NLRP13Q86W25 1043 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 RAB3IPQ96QF0 476 aaPredicted RBP10.42□□□□□ -0.74
NIPBL-202ENST00000448238 GOLIM4O00461 696 aa10.42□□□□□ -0.74
NIPBL-202ENST00000448238 MVPQ14764 893 aaKnown RBP10.42□□□□□ -0.74
NIPBL-202ENST00000448238 CNTROBQ8N137 903 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 NOL7Q9UMY1 257 aaKnown RBP10.41□□□□□ -0.74
NIPBL-202ENST00000448238 TEFQ10587 303 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 CCDC57Q2TAC2 916 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 SAMD1Q6SPF0 538 aaPredicted RBP10.41□□□□□ -0.74
NIPBL-202ENST00000448238 FHAD1B1AJZ9 1412 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 A0A1W2PRG0 241 aa10.41□□□□□ -0.74
NIPBL-202ENST00000448238 CHMP2AO43633 222 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms