RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PANK1Q8TE04 598 aa23.72■■□□□ 1.39
HMGA1-205ENST00000447654 PCDHB15Q9Y5E8 787 aa23.72■■□□□ 1.39
HMGA1-205ENST00000447654 EVC2Q86UK5 1308 aa23.71■■□□□ 1.39
HMGA1-205ENST00000447654 PTPRMP28827 1452 aa23.7■■□□□ 1.38
HMGA1-205ENST00000447654 SPINK5Q9NQ38 1064 aaPredicted RBP23.69■■□□□ 1.38
HMGA1-205ENST00000447654 PRAM1Q96QH2 718 aa23.67■■□□□ 1.38
HMGA1-205ENST00000447654 YTHDC2Q9H6S0 1430 aaKnown RBP23.67■■□□□ 1.38
HMGA1-205ENST00000447654 MORC1Q86VD1 984 aa23.67■■□□□ 1.38
HMGA1-205ENST00000447654 STAG3Q9UJ98 1225 aa23.67■■□□□ 1.38
HMGA1-205ENST00000447654 ALKQ9UM73 1620 aa23.66■■□□□ 1.38
HMGA1-205ENST00000447654 APAF1O14727 1248 aa23.66■■□□□ 1.38
HMGA1-205ENST00000447654 PPP6R1Q9UPN7 881 aa23.66■■□□□ 1.38
HMGA1-205ENST00000447654 A2ML1A8K2U0 1454 aa23.66■■□□□ 1.38
HMGA1-205ENST00000447654 SPATA31D1Q6ZQQ2 1576 aa23.66■■□□□ 1.38
HMGA1-205ENST00000447654 KIAA2012Q0VF49 1180 aa23.65■■□□□ 1.38
HMGA1-205ENST00000447654 ARHGEF40Q8TER5 1519 aa23.65■■□□□ 1.38
HMGA1-205ENST00000447654 MINK1Q8N4C8 1332 aaPredicted RBP23.65■■□□□ 1.38
HMGA1-205ENST00000447654 BAG4O95429 457 aaKnown RBP23.65■■□□□ 1.38
HMGA1-205ENST00000447654 ZSCAN23Q3MJ62 389 aa23.65■■□□□ 1.38
HMGA1-205ENST00000447654 KDM4FA0A1W2PPD8 638 aa23.64■■□□□ 1.38
HMGA1-205ENST00000447654 PUS7Q96PZ0 661 aaKnown RBP23.64■■□□□ 1.37
HMGA1-205ENST00000447654 POLR3AO14802 1390 aaPredicted RBP23.63■■□□□ 1.37
HMGA1-205ENST00000447654 ANKRD36BQ8N2N9 1353 aa23.63■■□□□ 1.37
HMGA1-205ENST00000447654 RBSNQ9H1K0 784 aa23.63■■□□□ 1.37
HMGA1-205ENST00000447654 K7ELQ4 463 aaPredicted RBP23.62■■□□□ 1.37
HMGA1-205ENST00000447654 DMRT2Q9Y5R5 561 aa23.62■■□□□ 1.37
HMGA1-205ENST00000447654 USP32Q8NFA0 1604 aa23.62■■□□□ 1.37
HMGA1-205ENST00000447654 CHMP4BQ9H444 224 aaKnown RBP23.62■■□□□ 1.37
HMGA1-205ENST00000447654 SHPRHQ149N8 1683 aa23.61■■□□□ 1.37
HMGA1-205ENST00000447654 SRPK2P78362 688 aaKnown RBP23.61■■□□□ 1.37
HMGA1-205ENST00000447654 ZNF710Q8N1W2 664 aa23.61■■□□□ 1.37
HMGA1-205ENST00000447654 ARID3AQ99856 593 aa23.61■■□□□ 1.37
HMGA1-205ENST00000447654 A0A1W2PP64 1363 aa23.6■■□□□ 1.37
HMGA1-205ENST00000447654 RARSP54136 660 aaKnown RBP23.6■■□□□ 1.37
HMGA1-205ENST00000447654 CBX1P83916 185 aa23.6■■□□□ 1.37
HMGA1-205ENST00000447654 HDAC1Q13547 482 aaPredicted RBP23.6■■□□□ 1.37
HMGA1-205ENST00000447654 NUCB2P80303 420 aa23.59■■□□□ 1.37
HMGA1-205ENST00000447654 MTHFSP49914 203 aa23.58■■□□□ 1.37
HMGA1-205ENST00000447654 SLC20A2Q08357 652 aa23.58■■□□□ 1.37
HMGA1-205ENST00000447654 SSFA2P28290 1259 aa23.58■■□□□ 1.36
HMGA1-205ENST00000447654 RIMS2Q9UQ26 1411 aa23.58■■□□□ 1.36
HMGA1-205ENST00000447654 KIF16BQ96L93 1317 aa23.57■■□□□ 1.36
HMGA1-205ENST00000447654 WAPLQ7Z5K2 1190 aa23.57■■□□□ 1.36
HMGA1-205ENST00000447654 FEZ1Q99689 392 aa23.57■■□□□ 1.36
HMGA1-205ENST00000447654 KIF3AQ9Y496 699 aa23.57■■□□□ 1.36
HMGA1-205ENST00000447654 CD163L1Q9NR16 1453 aa23.56■■□□□ 1.36
HMGA1-205ENST00000447654 LRSAM1Q6UWE0 723 aa23.55■■□□□ 1.36
HMGA1-205ENST00000447654 SETD1AO15047 1707 aaKnown RBP23.55■■□□□ 1.36
HMGA1-205ENST00000447654 MVPQ14764 893 aaKnown RBP23.54■■□□□ 1.36
HMGA1-205ENST00000447654 ATP2B3Q16720 1220 aa23.54■■□□□ 1.36
HMGA1-205ENST00000447654 CAVIN1Q6NZI2 390 aaKnown RBP23.54■■□□□ 1.36
HMGA1-205ENST00000447654 LMBRD1Q9NUN5 540 aa23.54■■□□□ 1.36
HMGA1-205ENST00000447654 PRIM1P49642 420 aaKnown RBP23.54■■□□□ 1.36
HMGA1-205ENST00000447654 CDK19Q9BWU1 502 aa23.53■■□□□ 1.36
HMGA1-205ENST00000447654 PIBF1Q8WXW3 757 aa23.52■■□□□ 1.36
HMGA1-205ENST00000447654 ABCC11Q96J66 1382 aa23.52■■□□□ 1.36
HMGA1-205ENST00000447654 GABPB1Q06547 395 aaPredicted RBP23.52■■□□□ 1.36
HMGA1-205ENST00000447654 KIF2CQ99661 725 aa23.52■■□□□ 1.36
HMGA1-205ENST00000447654 GGNBP2Q9H3C7 697 aa23.52■■□□□ 1.36
HMGA1-205ENST00000447654 RLBP1P12271 317 aa23.51■■□□□ 1.35
HMGA1-205ENST00000447654 CDK11BP21127 795 aaKnown RBP23.51■■□□□ 1.35
HMGA1-205ENST00000447654 WWC1Q8IX03 1113 aa23.51■■□□□ 1.35
HMGA1-205ENST00000447654 NRXN3Q9Y4C0 1643 aa23.51■■□□□ 1.35
HMGA1-205ENST00000447654 CYP2E1P05181 493 aaPredicted RBP23.5■■□□□ 1.35
HMGA1-205ENST00000447654 PDCL2Q8N4E4 241 aa23.5■■□□□ 1.35
HMGA1-205ENST00000447654 RRP7AQ9Y3A4 280 aaKnown RBP23.5■■□□□ 1.35
HMGA1-205ENST00000447654 NCBP3Q53F19 620 aaKnown RBP23.49■■□□□ 1.35
HMGA1-205ENST00000447654 DNTTIP2Q5QJE6 756 aaKnown RBP23.49■■□□□ 1.35
HMGA1-205ENST00000447654 METP08581 1390 aa23.49■■□□□ 1.35
HMGA1-205ENST00000447654 FYB1O15117 783 aa23.48■■□□□ 1.35
HMGA1-205ENST00000447654 CABP1Q9NZU7 370 aa23.48■■□□□ 1.35
HMGA1-205ENST00000447654 ATAD2Q6PL18 1390 aa23.48■■□□□ 1.35
HMGA1-205ENST00000447654 NSD2O96028 1365 aa23.48■■□□□ 1.35
HMGA1-205ENST00000447654 NEUROD2Q15784 382 aa23.47■■□□□ 1.35
HMGA1-205ENST00000447654 MCTP1Q6DN14 999 aa23.47■■□□□ 1.35
HMGA1-205ENST00000447654 WDR63Q8IWG1 891 aa23.47■■□□□ 1.35
HMGA1-205ENST00000447654 ANKRD7Q92527 254 aa23.47■■□□□ 1.35
HMGA1-205ENST00000447654 ESF1Q9H501 851 aaKnown RBP23.47■■□□□ 1.35
HMGA1-205ENST00000447654 CWC22Q9HCG8 908 aaKnown RBP23.47■■□□□ 1.35
HMGA1-205ENST00000447654 SPTLC3Q9NUV7 552 aa23.47■■□□□ 1.35
HMGA1-205ENST00000447654 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.47■■□□□ 1.352e-259■■■■■ 48.7
HMGA1-205ENST00000447654 ZNF830Q96NB3 372 aaPredicted RBP23.46■■□□□ 1.35
HMGA1-205ENST00000447654 BMP2KLQ5H9B9 411 aa23.45■■□□□ 1.35
HMGA1-205ENST00000447654 OGFRQ9NZT2 677 aa23.45■■□□□ 1.35
HMGA1-205ENST00000447654 PTMAP06454 111 aaKnown RBP23.45■■□□□ 1.34
HMGA1-205ENST00000447654 CT47B1P0C2W7 299 aaPredicted RBP23.45■■□□□ 1.34
HMGA1-205ENST00000447654 FTSJ3Q8IY81 847 aaKnown RBP23.45■■□□□ 1.34
HMGA1-205ENST00000447654 GAS2L2Q8NHY3 880 aa23.45■■□□□ 1.34
HMGA1-205ENST00000447654 IQSEC2Q5JU85 1478 aa23.45■■□□□ 1.34
HMGA1-205ENST00000447654 CCDC66A2RUB6 948 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 FKBP5Q13451 457 aaPredicted RBP23.44■■□□□ 1.34
HMGA1-205ENST00000447654 NOLC1Q14978 699 aaKnown RBP eCLIP23.44■■□□□ 1.34
HMGA1-205ENST00000447654 TCP11L2Q8N4U5 519 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 DIAPH3Q9NSV4 1193 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 MBD3O95983 291 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 RUNDC1Q96C34 613 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 DNAJC2Q99543 621 aaKnown RBP23.44■■□□□ 1.34
HMGA1-205ENST00000447654 BCL2L12Q9HB09 334 aa23.44■■□□□ 1.34
HMGA1-205ENST00000447654 DLC1Q96QB1 1528 aa23.43■■□□□ 1.34
HMGA1-205ENST00000447654 PHF23Q9BUL5 403 aaPredicted RBP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms