RNA–Protein interactions for RNA: ENST00000446155.1

HMGB1P48-201, Transcript of high mobility group box 1 pseudogene 48, humanhuman

BASIC

Gene HMGB1P48, Length 598 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P48-201ENST00000446155 PRR20AP86496 221 aa8.63□□□□□ -1.03
HMGB1P48-201ENST00000446155 CCDC82Q8N4S0 544 aa8.63□□□□□ -1.03
HMGB1P48-201ENST00000446155 PIK3CDO00329 1044 aa8.62□□□□□ -1.03
HMGB1P48-201ENST00000446155 FOXC1Q12948 553 aa8.62□□□□□ -1.03
HMGB1P48-201ENST00000446155 NFATC2IPQ8NCF5 419 aa8.62□□□□□ -1.03
HMGB1P48-201ENST00000446155 TOR4AQ9NXH8 423 aa8.62□□□□□ -1.03
HMGB1P48-201ENST00000446155 GIGYF1O75420 1035 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P48-201ENST00000446155 NBPF20Q3BBV1 942 aa8.61□□□□□ -1.03
HMGB1P48-201ENST00000446155 KCTD15Q96SI1 283 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P48-201ENST00000446155 ADH1CP00326 375 aa8.6□□□□□ -1.03
HMGB1P48-201ENST00000446155 INTS6LQ5JSJ4 861 aaKnown RBP8.6□□□□□ -1.03
HMGB1P48-201ENST00000446155 SEPT12Q8IYM1 358 aa8.6□□□□□ -1.03
HMGB1P48-201ENST00000446155 PPP1R12CQ9BZL4 782 aa8.6□□□□□ -1.03
HMGB1P48-201ENST00000446155 SERPINA10Q9UK55 444 aa8.6□□□□□ -1.03
HMGB1P48-201ENST00000446155 TNFRSF10AO00220 468 aa8.59□□□□□ -1.03
HMGB1P48-201ENST00000446155 TBC1D9Q6ZT07 1266 aa8.59□□□□□ -1.03
HMGB1P48-201ENST00000446155 VASH1Q7L8A9 365 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P48-201ENST00000446155 SNIP1Q8TAD8 396 aaKnown RBP8.59□□□□□ -1.03
HMGB1P48-201ENST00000446155 CCDC85AQ96PX6 553 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P48-201ENST00000446155 PALM3A6NDB9 673 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P48-201ENST00000446155 CFAP70Q5T0N1 1121 aa8.58□□□□□ -1.04
HMGB1P48-201ENST00000446155 TRAF7Q6Q0C0 670 aa8.58□□□□□ -1.04
HMGB1P48-201ENST00000446155 ATP9BO43861 1147 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 NR3C2P08235 984 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 FSHRP23945 695 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 NR5A1Q13285 461 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 SLFNL1Q499Z3 407 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 CCDC125Q86Z20 511 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 RNF135Q8IUD6 432 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 CCDC97Q96F63 343 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 ARXQ96QS3 562 aa8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 MAFBQ9Y5Q3 323 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P48-201ENST00000446155 J3QL48 77 aa8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 SMPD1P17405 629 aa8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 ARID5BQ14865 1188 aa8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 TSGA10IPQ3SY00 556 aa8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 RNF20Q5VTR2 975 aa8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 TFIP11Q9UBB9 837 aaKnown RBP8.56□□□□□ -1.04
HMGB1P48-201ENST00000446155 ALDH1A1P00352 501 aa8.55□□□□□ -1.04
HMGB1P48-201ENST00000446155 SRPK2P78362 688 aaKnown RBP8.55□□□□□ -1.04
HMGB1P48-201ENST00000446155 PLEKHM2Q8IWE5 1019 aa8.55□□□□□ -1.04
HMGB1P48-201ENST00000446155 CYP4X1Q8N118 509 aa8.55□□□□□ -1.04
HMGB1P48-201ENST00000446155 PLPP7Q8NBV4 271 aa8.55□□□□□ -1.04
HMGB1P48-201ENST00000446155 USP17L5A8MUK1 530 aa8.54□□□□□ -1.04
HMGB1P48-201ENST00000446155 ERVH48-1M5A8F1 160 aa8.54□□□□□ -1.04
HMGB1P48-201ENST00000446155 SKIP12755 728 aa8.54□□□□□ -1.04
HMGB1P48-201ENST00000446155 MAP7D1Q3KQU3 841 aa8.54□□□□□ -1.04
HMGB1P48-201ENST00000446155 KLF16Q9BXK1 252 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P48-201ENST00000446155 USP17L3A6NCW0 530 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 USP17L4A6NCW7 530 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 USP17L2Q6R6M4 530 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 USP17L1Q7RTZ2 530 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 CCDC116Q8IYX3 515 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 CDCA7Q9BWT1 371 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 PDZRN3Q9UPQ7 1066 aa8.53□□□□□ -1.04
HMGB1P48-201ENST00000446155 TTC24A2A3L6 582 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P48-201ENST00000446155 NNTQ13423 1086 aa8.52□□□□□ -1.05
HMGB1P48-201ENST00000446155 PPP1R26Q5T8A7 1209 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P48-201ENST00000446155 LZTS3O60299 673 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P48-201ENST00000446155 DHX9Q08211 1270 aaKnown RBP8.51□□□□□ -1.05
HMGB1P48-201ENST00000446155 DOLKQ9UPQ8 538 aa8.51□□□□□ -1.05
HMGB1P48-201ENST00000446155 PCDHB11Q9Y5F2 797 aa8.51□□□□□ -1.05
HMGB1P48-201ENST00000446155 WASF2Q9Y6W5 498 aa8.51□□□□□ -1.05
HMGB1P48-201ENST00000446155 LILRA1O75019 489 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 LMOD1P29536 600 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 RAB15P59190 212 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 ERVK-9P63128 1117 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 NCOA4Q13772 614 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 KANK4Q5T7N3 995 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 ARID3AQ99856 593 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 TMPRSS4Q9NRS4 437 aa8.5□□□□□ -1.05
HMGB1P48-201ENST00000446155 SCTRP47872 440 aa8.49□□□□□ -1.05
HMGB1P48-201ENST00000446155 DEPDC4Q8N2C3 294 aa8.49□□□□□ -1.05
HMGB1P48-201ENST00000446155 ZNF784Q8NCA9 323 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P48-201ENST00000446155 HPS1Q92902 700 aa8.49□□□□□ -1.05
HMGB1P48-201ENST00000446155 EMILIN1Q9Y6C2 1016 aa8.49□□□□□ -1.05
HMGB1P48-201ENST00000446155 AVPP01185 164 aa8.48□□□□□ -1.05
HMGB1P48-201ENST00000446155 TIMP2P16035 220 aa8.48□□□□□ -1.05
HMGB1P48-201ENST00000446155 NRG2O14511 850 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P48-201ENST00000446155 PBXIP1Q96AQ6 731 aa8.47□□□□□ -1.05
HMGB1P48-201ENST00000446155 ITPKCQ96DU7 683 aa8.47□□□□□ -1.05
HMGB1P48-201ENST00000446155 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 EML3Q32P44 896 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 OXLD1Q5BKU9 147 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 CC2D2BQ6DHV5 1058 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 OSBPL3Q9H4L5 887 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 ZFAND3Q9H8U3 227 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 PGPEP1Q9NXJ5 209 aa8.46□□□□□ -1.06
HMGB1P48-201ENST00000446155 GFRA3O60609 400 aa8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 PPP1R15AO75807 674 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 RFX1P22670 979 aa8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 ADD1P35611 737 aaKnown RBP8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 WDR4P57081 412 aaKnown RBP8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 CYLDQ9NQC7 956 aa8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 MKRN1Q9UHC7 482 aaKnown RBP8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 NOD1Q9Y239 953 aa8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 PCDHGA11Q9Y5H2 935 aa8.45□□□□□ -1.06
HMGB1P48-201ENST00000446155 ATP5J2-PTCD1G3V325 749 aa8.44□□□□□ -1.06
HMGB1P48-201ENST00000446155 ZIC2O95409 532 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P48-201ENST00000446155 MYT1Q01538 1121 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms