RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 AVPP01185 164 aa7.85□□□□□ -1.15
PTPN4-206ENST00000441089 NFX1Q12986 1120 aaKnown RBP7.85□□□□□ -1.15
PTPN4-206ENST00000441089 MED14O60244 1454 aa7.85□□□□□ -1.15
PTPN4-206ENST00000441089 IQGAP1P46940 1657 aa7.84□□□□□ -1.15
PTPN4-206ENST00000441089 KCNV2Q8TDN2 545 aa7.84□□□□□ -1.15
PTPN4-206ENST00000441089 CDK11AQ9UQ88 783 aaPredicted RBP7.84□□□□□ -1.15
PTPN4-206ENST00000441089 KIF14Q15058 1648 aa7.84□□□□□ -1.15
PTPN4-206ENST00000441089 NPHP4O75161 1426 aaPredicted RBP7.84□□□□□ -1.15
PTPN4-206ENST00000441089 FAM135BQ49AJ0 1406 aa7.84□□□□□ -1.15
PTPN4-206ENST00000441089 CDC42BPBQ9Y5S2 1711 aa7.83□□□□□ -1.16
PTPN4-206ENST00000441089 ITSN2Q9NZM3 1697 aa7.83□□□□□ -1.16
PTPN4-206ENST00000441089 THAP11Q96EK4 314 aa7.83□□□□□ -1.16
PTPN4-206ENST00000441089 SPSB2Q99619 263 aa7.83□□□□□ -1.16
PTPN4-206ENST00000441089 PRDM9Q9NQV7 894 aa7.83□□□□□ -1.16
PTPN4-206ENST00000441089 CDK13Q14004 1512 aaKnown RBP7.83□□□□□ -1.16
PTPN4-206ENST00000441089 WFS1O76024 890 aa7.82□□□□□ -1.16
PTPN4-206ENST00000441089 ZNF772Q68DY9 489 aaPredicted RBP7.82□□□□□ -1.16
PTPN4-206ENST00000441089 THEMISQ8N1K5 641 aaPredicted RBP7.82□□□□□ -1.16
PTPN4-206ENST00000441089 PXYLP1Q8TE99 480 aa7.82□□□□□ -1.16
PTPN4-206ENST00000441089 FCF1Q9Y324 198 aaKnown RBP7.82□□□□□ -1.16
PTPN4-206ENST00000441089 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.82□□□□□ -1.16
PTPN4-206ENST00000441089 XIRP1Q702N8 1843 aaKnown RBP7.81□□□□□ -1.16
PTPN4-206ENST00000441089 FAM160A2Q8N612 972 aaPredicted RBP7.81□□□□□ -1.16
PTPN4-206ENST00000441089 TRIM52Q96A61 297 aa7.81□□□□□ -1.16
PTPN4-206ENST00000441089 ABCC1P33527 1531 aa7.81□□□□□ -1.16
PTPN4-206ENST00000441089 NUTM2FA1L443 756 aa7.8□□□□□ -1.16
PTPN4-206ENST00000441089 NLRP7Q8WX94 980 aa7.8□□□□□ -1.16
PTPN4-206ENST00000441089 CDK12Q9NYV4 1490 aaPredicted RBP7.8□□□□□ -1.16
PTPN4-206ENST00000441089 ROBO1Q9Y6N7 1651 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 CLIP1P30622 1438 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 FAM135AQ9P2D6 1515 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 PREX2Q70Z35 1606 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.79□□□□□ -1.16
PTPN4-206ENST00000441089 C11orf95C9JLR9 678 aaPredicted RBP7.79□□□□□ -1.16
PTPN4-206ENST00000441089 AXIN1O15169 862 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 SNRPBP14678 240 aaKnown RBP7.79□□□□□ -1.16
PTPN4-206ENST00000441089 MORN1Q5T089 497 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 TSHZ2Q9NRE2 1034 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 TNRQ92752 1358 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 PLXNC1O60486 1568 aa7.79□□□□□ -1.16
PTPN4-206ENST00000441089 FECHP22830 423 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 RXRBP28702 533 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 RPIAP49247 311 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 GGT6Q6P531 493 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 LMOD2Q6P5Q4 547 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 ARHGEF1Q92888 912 aaKnown RBP7.78□□□□□ -1.16
PTPN4-206ENST00000441089 JCADQ9P266 1359 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 UGGT1Q9NYU2 1555 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 KDM5DQ9BY66 1539 aa7.78□□□□□ -1.16
PTPN4-206ENST00000441089 SAMD9LQ8IVG5 1584 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 LRRC9Q6ZRR7 1453 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 NLRP1Q9C000 1473 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 WIPF1O43516 503 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 FUT2Q10981 343 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 METTL3Q86U44 580 aaKnown RBP7.77□□□□□ -1.17
PTPN4-206ENST00000441089 PHLPP1O60346 1717 aa7.77□□□□□ -1.17
PTPN4-206ENST00000441089 TROQ12816 1431 aaPredicted RBP7.77□□□□□ -1.17
PTPN4-206ENST00000441089 SPAG9O60271 1321 aaKnown RBP7.77□□□□□ -1.17
PTPN4-206ENST00000441089 EP400Q96L91 3159 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 A2MP01023 1474 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 SMPD1P17405 629 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 SMCPP49901 116 aaPredicted RBP7.76□□□□□ -1.17
PTPN4-206ENST00000441089 PLCB2Q00722 1185 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 MEX3CQ5U5Q3 659 aaKnown RBP7.76□□□□□ -1.17
PTPN4-206ENST00000441089 CYP4X1Q8N118 509 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 SLC27A5Q9Y2P5 690 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 ZC3H13Q5T200 1668 aaKnown RBP7.76□□□□□ -1.17
PTPN4-206ENST00000441089 ADGBQ8N7X0 1667 aa7.76□□□□□ -1.17
PTPN4-206ENST00000441089 ATP7AQ04656 1500 aa7.75□□□□□ -1.17
PTPN4-206ENST00000441089 SPATA31A6Q5VVP1 1343 aa7.75□□□□□ -1.17
PTPN4-206ENST00000441089 PZPP20742 1482 aa7.75□□□□□ -1.17
PTPN4-206ENST00000441089 RANGAP1P46060 587 aaPredicted RBP7.74□□□□□ -1.17
PTPN4-206ENST00000441089 RNF19BQ6ZMZ0 732 aa7.74□□□□□ -1.17
PTPN4-206ENST00000441089 CDC42BPAQ5VT25 1732 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 MIA2Q96PC5 1412 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 SEMA3EO15041 775 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 FCHSD2O94868 740 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 CTC1Q2NKJ3 1217 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 ATP13A2Q9NQ11 1180 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 STK17AQ9UEE5 414 aa7.73□□□□□ -1.17
PTPN4-206ENST00000441089 ATP1B4Q9UN42 357 aaPredicted RBP7.73□□□□□ -1.17
PTPN4-206ENST00000441089 INO80Q9ULG1 1556 aaPredicted RBP7.72□□□□□ -1.17
PTPN4-206ENST00000441089 FGD6Q6ZV73 1430 aa7.72□□□□□ -1.17
PTPN4-206ENST00000441089 J3QL48 77 aa7.72□□□□□ -1.17
PTPN4-206ENST00000441089 FBXO31Q5XUX0 539 aaPredicted RBP7.72□□□□□ -1.17
PTPN4-206ENST00000441089 PHOX2BQ99453 314 aa7.72□□□□□ -1.17
PTPN4-206ENST00000441089 SETBP1Q9Y6X0 1596 aa7.71□□□□□ -1.17
PTPN4-206ENST00000441089 FMN1Q68DA7 1419 aa7.71□□□□□ -1.17
PTPN4-206ENST00000441089 GPR37O15354 613 aa7.71□□□□□ -1.18
PTPN4-206ENST00000441089 CD2BP2O95400 341 aaKnown RBP7.71□□□□□ -1.18
PTPN4-206ENST00000441089 BRICD5Q6PL45 260 aa7.71□□□□□ -1.18
PTPN4-206ENST00000441089 EEA1Q15075 1411 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 SHPRHQ149N8 1683 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 SYCP2Q9BX26 1530 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 OATP04181 439 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 RDH13Q8NBN7 331 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 LRP6O75581 1613 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 COL16A1Q07092 1604 aaPredicted RBP7.7□□□□□ -1.18
PTPN4-206ENST00000441089 TMEM94Q12767 1356 aa7.7□□□□□ -1.18
PTPN4-206ENST00000441089 ATAD2Q6PL18 1390 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms