RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 MYT1Q01538 1121 aa32.88■■■□□ 2.85
VARS-217ENST00000440048 AXIN2Q9Y2T1 843 aa32.88■■■□□ 2.85
VARS-217ENST00000440048 RGPD5Q99666 1765 aa32.88■■■□□ 2.85
VARS-217ENST00000440048 THSD7AQ9UPZ6 1657 aa32.85■■■□□ 2.85
VARS-217ENST00000440048 POLR3GLQ9BT43 218 aa32.85■■■□□ 2.85
VARS-217ENST00000440048 USP35Q9P2H5 1018 aa32.85■■■□□ 2.85
VARS-217ENST00000440048 LTN1O94822 1766 aa32.83■■■□□ 2.85
VARS-217ENST00000440048 KRT27Q7Z3Y8 459 aa32.82■■■□□ 2.84
VARS-217ENST00000440048 COG3Q96JB2 828 aa32.82■■■□□ 2.84
VARS-217ENST00000440048 ABCC6O95255 1503 aa32.82■■■□□ 2.84
VARS-217ENST00000440048 CARD14Q9BXL6 1004 aa32.81■■■□□ 2.84
VARS-217ENST00000440048 CRB1P82279 1406 aa32.8■■■□□ 2.84
VARS-217ENST00000440048 FYB1O15117 783 aa32.8■■■□□ 2.84
VARS-217ENST00000440048 TCP11L2Q8N4U5 519 aa32.8■■■□□ 2.84
VARS-217ENST00000440048 BARGINQ6ZT62 677 aa32.79■■■□□ 2.84
VARS-217ENST00000440048 KIF20BQ96Q89 1820 aa32.79■■■□□ 2.84
VARS-217ENST00000440048 WDR17Q8IZU2 1322 aa32.77■■■□□ 2.84
VARS-217ENST00000440048 GGNBP2Q9H3C7 697 aa32.77■■■□□ 2.84
VARS-217ENST00000440048 THRAP3Q9Y2W1 955 aaKnown RBP32.77■■■□□ 2.84
VARS-217ENST00000440048 NSD3Q9BZ95 1437 aa32.77■■■□□ 2.84
VARS-217ENST00000440048 C11orf95C9JLR9 678 aaPredicted RBP32.76■■■□□ 2.83
VARS-217ENST00000440048 TOM1L2Q6ZVM7 507 aa32.76■■■□□ 2.83
VARS-217ENST00000440048 CSB-PGBD3P0DP91 1061 aa32.72■■■□□ 2.83
VARS-217ENST00000440048 BLMP54132 1417 aaPredicted RBP32.71■■■□□ 2.83
VARS-217ENST00000440048 FBLN1P23142 703 aa32.71■■■□□ 2.83
VARS-217ENST00000440048 CARD10Q9BWT7 1032 aa32.68■■■□□ 2.82
VARS-217ENST00000440048 MAP3K19Q56UN5 1328 aa32.68■■■□□ 2.82
VARS-217ENST00000440048 SF3B2Q13435 895 aaKnown RBP32.67■■■□□ 2.82
VARS-217ENST00000440048 FAM182BQ5T319 152 aa32.67■■■□□ 2.82
VARS-217ENST00000440048 IP6K1Q92551 441 aa32.67■■■□□ 2.82
VARS-217ENST00000440048 PARP4Q9UKK3 1724 aaKnown RBP32.67■■■□□ 2.82
VARS-217ENST00000440048 ERBB3P21860 1342 aa32.67■■■□□ 2.82
VARS-217ENST00000440048 WNK3Q9BYP7 1800 aa32.65■■■□□ 2.82
VARS-217ENST00000440048 PANK3Q9H999 370 aa32.65■■■□□ 2.82
VARS-217ENST00000440048 CGNL1Q0VF96 1302 aa32.64■■■□□ 2.82
VARS-217ENST00000440048 ANKRD24Q8TF21 1146 aa32.64■■■□□ 2.82
VARS-217ENST00000440048 KIF7Q2M1P5 1343 aa32.62■■■□□ 2.81
VARS-217ENST00000440048 PDE3BQ13370 1112 aa32.62■■■□□ 2.81
VARS-217ENST00000440048 AMPHP49418 695 aa32.61■■■□□ 2.81
VARS-217ENST00000440048 RRS1Q15050 365 aaKnown RBP32.61■■■□□ 2.81
VARS-217ENST00000440048 CCDC7Q96M83 1385 aa32.6■■■□□ 2.81
VARS-217ENST00000440048 HOXC9P31274 260 aa32.6■■■□□ 2.81
VARS-217ENST00000440048 NLRP2Q9NX02 1062 aa32.59■■■□□ 2.81
VARS-217ENST00000440048 LRRC37A3O60309 1634 aa32.58■■■□□ 2.81
VARS-217ENST00000440048 LTV1Q96GA3 475 aaPredicted RBP32.57■■■□□ 2.8
VARS-217ENST00000440048 CDCA7Q9BWT1 371 aaPredicted RBP32.57■■■□□ 2.8
VARS-217ENST00000440048 DISP2A7MBM2 1401 aa32.57■■■□□ 2.8
VARS-217ENST00000440048 RTL1A6NKG5 1358 aa32.57■■■□□ 2.8
VARS-217ENST00000440048 DDB1Q16531 1140 aa32.55■■■□□ 2.8
VARS-217ENST00000440048 FAM196AQ6ZSG2 479 aa32.55■■■□□ 2.8
VARS-217ENST00000440048 FAM208AQ9UK61 1670 aaKnown RBP32.55■■■□□ 2.8
VARS-217ENST00000440048 ANKRD26Q9UPS8 1709 aa32.54■■■□□ 2.8
VARS-217ENST00000440048 PEAK1Q9H792 1746 aa32.53■■■□□ 2.8
VARS-217ENST00000440048 RGPD1P0DJD0 1748 aa32.52■■■□□ 2.8
VARS-217ENST00000440048 BAG6P46379 1132 aa32.5■■■□□ 2.79
VARS-217ENST00000440048 DEFB132Q7Z7B7 95 aa32.5■■■□□ 2.79
VARS-217ENST00000440048 RGPD2P0DJD1 1756 aa32.5■■■□□ 2.79
VARS-217ENST00000440048 MAP2P11137 1827 aaKnown RBP32.49■■■□□ 2.79
VARS-217ENST00000440048 KIF24Q5T7B8 1368 aa32.48■■■□□ 2.79
VARS-217ENST00000440048 EMILIN1Q9Y6C2 1016 aa32.48■■■□□ 2.79
VARS-217ENST00000440048 FLT4P35916 1363 aa32.47■■■□□ 2.79
VARS-217ENST00000440048 TNS1Q9HBL0 1735 aaKnown RBP32.47■■■□□ 2.79
VARS-217ENST00000440048 TRIM37O94972 964 aa32.46■■■□□ 2.79
VARS-217ENST00000440048 HSP90AB2PQ58FF8 381 aa32.46■■■□□ 2.79
VARS-217ENST00000440048 NSD2O96028 1365 aa32.45■■■□□ 2.79
VARS-217ENST00000440048 INSRP06213 1382 aa32.45■■■□□ 2.79
VARS-217ENST00000440048 EXOC5O00471 708 aa32.45■■■□□ 2.79
VARS-217ENST00000440048 IL2RBP14784 551 aa32.45■■■□□ 2.79
VARS-217ENST00000440048 KNSTRNQ9Y448 316 aa32.45■■■□□ 2.79
VARS-217ENST00000440048 OVOS2A0A0G2JMS6 1433 aa32.44■■■□□ 2.78
VARS-217ENST00000440048 MARCH10Q8NA82 808 aaPredicted RBP32.44■■■□□ 2.78
VARS-217ENST00000440048 WASHC2AQ641Q2 1341 aa32.44■■■□□ 2.78
VARS-217ENST00000440048 TNS2Q63HR2 1409 aa32.43■■■□□ 2.78
VARS-217ENST00000440048 TNNT2P45379 298 aaPredicted RBP32.42■■■□□ 2.78
VARS-217ENST00000440048 SMG6Q86US8 1419 aaKnown RBP32.42■■■□□ 2.78
VARS-217ENST00000440048 PPM1GO15355 546 aaPredicted RBP32.41■■■□□ 2.78
VARS-217ENST00000440048 POLKQ9UBT6 870 aa32.41■■■□□ 2.78
VARS-217ENST00000440048 SBF2Q86WG5 1849 aa32.4■■■□□ 2.78
VARS-217ENST00000440048 NBPF6Q5VWK0 638 aa32.39■■■□□ 2.78
VARS-217ENST00000440048 NBPF4Q96M43 638 aa32.39■■■□□ 2.78
VARS-217ENST00000440048 AMER1Q5JTC6 1135 aaPredicted RBP32.37■■■□□ 2.77
VARS-217ENST00000440048 EN1Q05925 392 aaPredicted RBP32.36■■■□□ 2.77
VARS-217ENST00000440048 MORC1Q86VD1 984 aa32.36■■■□□ 2.77
VARS-217ENST00000440048 PER1O15534 1290 aaPredicted RBP32.35■■■□□ 2.77
VARS-217ENST00000440048 BCL9O00512 1426 aa32.34■■■□□ 2.77
VARS-217ENST00000440048 APBA3O96018 575 aa32.34■■■□□ 2.77
VARS-217ENST00000440048 USHBP1Q8N6Y0 703 aa32.34■■■□□ 2.77
VARS-217ENST00000440048 SRCAPQ6ZRS2 3230 aa32.32■■■□□ 2.76
VARS-217ENST00000440048 MEGF6O75095 1541 aa32.31■■■□□ 2.76
VARS-217ENST00000440048 EZH2Q15910 746 aaKnown RBP32.28■■■□□ 2.76
VARS-217ENST00000440048 CAMKK2Q96RR4 588 aa32.28■■■□□ 2.76
VARS-217ENST00000440048 PARD3Q8TEW0 1356 aa32.28■■■□□ 2.76
VARS-217ENST00000440048 PTF1AQ7RTS3 328 aa32.27■■■□□ 2.76
VARS-217ENST00000440048 BCL11BQ9C0K0 894 aaPredicted RBP32.27■■■□□ 2.76
VARS-217ENST00000440048 DDX54Q8TDD1 881 aaKnown RBP32.25■■■□□ 2.75
VARS-217ENST00000440048 RAPGEF4Q8WZA2 1011 aa32.25■■■□□ 2.75
VARS-217ENST00000440048 SHANK3Q9BYB0 1731 aa32.25■■■□□ 2.75
VARS-217ENST00000440048 ZCRB1Q8TBF4 217 aaKnown RBP32.24■■■□□ 2.75
VARS-217ENST00000440048 KAT6BQ8WYB5 2073 aa32.23■■■□□ 2.75
VARS-217ENST00000440048 EIF4A2Q14240 407 aaKnown RBP32.23■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms