RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 SRCAPQ6ZRS2 3230 aa11.23□□□□□ -0.61
VPS50-204ENST00000438395 GLI3P10071 1580 aa11.22□□□□□ -0.61
VPS50-204ENST00000438395 PRR36Q9H6K5 1346 aa11.22□□□□□ -0.61
VPS50-204ENST00000438395 BTG4Q9NY30 223 aa11.22□□□□□ -0.61
VPS50-204ENST00000438395 FAM83GA6ND36 823 aa11.21□□□□□ -0.61
VPS50-204ENST00000438395 KRT27Q7Z3Y8 459 aa11.21□□□□□ -0.61
VPS50-204ENST00000438395 NUDT16Q96DE0 195 aaKnown RBP11.21□□□□□ -0.61
VPS50-204ENST00000438395 CHRM1P11229 460 aaPredicted RBP11.2□□□□□ -0.62
VPS50-204ENST00000438395 FAM98CQ17RN3 349 aaKnown RBP11.2□□□□□ -0.62
VPS50-204ENST00000438395 PLCH1Q4KWH8 1693 aa11.2□□□□□ -0.62
VPS50-204ENST00000438395 RGPD8O14715 1765 aaPredicted RBP11.19□□□□□ -0.62
VPS50-204ENST00000438395 NWD2Q9ULI1 1742 aa11.19□□□□□ -0.62
VPS50-204ENST00000438395 ATP7BP35670 1465 aa11.19□□□□□ -0.62
VPS50-204ENST00000438395 ABCA3Q99758 1704 aa11.18□□□□□ -0.62
VPS50-204ENST00000438395 SEC24BO95487 1268 aa11.18□□□□□ -0.62
VPS50-204ENST00000438395 BAG6P46379 1132 aa11.18□□□□□ -0.62
VPS50-204ENST00000438395 SRPK2P78362 688 aaKnown RBP11.18□□□□□ -0.62
VPS50-204ENST00000438395 ZNF467Q7Z7K2 595 aaPredicted RBP11.18□□□□□ -0.62
VPS50-204ENST00000438395 CDK19Q9BWU1 502 aa11.18□□□□□ -0.62
VPS50-204ENST00000438395 KIAA0232Q92628 1395 aa11.16□□□□□ -0.62
VPS50-204ENST00000438395 COL14A1Q05707 1796 aaKnown RBP11.16□□□□□ -0.62
VPS50-204ENST00000438395 CENPJQ9HC77 1338 aaPredicted RBP11.16□□□□□ -0.62
VPS50-204ENST00000438395 ITSN1Q15811 1721 aa11.16□□□□□ -0.62
VPS50-204ENST00000438395 TRPM3Q9HCF6 1732 aaPredicted RBP11.16□□□□□ -0.62
VPS50-204ENST00000438395 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
VPS50-204ENST00000438395 NUTM2GQ5VZR2 741 aa11.16□□□□□ -0.62
VPS50-204ENST00000438395 DEFB132Q7Z7B7 95 aa11.16□□□□□ -0.62
VPS50-204ENST00000438395 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
VPS50-204ENST00000438395 ARHGEF28Q8N1W1 1705 aaKnown RBP11.15□□□□□ -0.62
VPS50-204ENST00000438395 ACEP12821 1306 aa11.15□□□□□ -0.62
VPS50-204ENST00000438395 SPATA31A5Q5VU36 1347 aa11.15□□□□□ -0.62
VPS50-204ENST00000438395 SPATA31A7Q8IWB4 1347 aa11.15□□□□□ -0.62
VPS50-204ENST00000438395 ALS2Q96Q42 1657 aa11.15□□□□□ -0.62
VPS50-204ENST00000438395 EVA1CP58658 441 aa11.15□□□□□ -0.62
VPS50-204ENST00000438395 PSEN1P49768 467 aa11.14□□□□□ -0.63
VPS50-204ENST00000438395 ZC3H6P61129 1189 aaKnown RBP11.14□□□□□ -0.63
VPS50-204ENST00000438395 CHRNA2Q15822 529 aa11.14□□□□□ -0.63
VPS50-204ENST00000438395 NBPF8Q3BBV2 869 aa11.14□□□□□ -0.63
VPS50-204ENST00000438395 ABTB2Q8N961 1025 aa11.14□□□□□ -0.63
VPS50-204ENST00000438395 POLR3AO14802 1390 aaPredicted RBP11.14□□□□□ -0.63
VPS50-204ENST00000438395 IER5LQ5T953 404 aa11.13□□□□□ -0.63
VPS50-204ENST00000438395 KIAA1210Q9ULL0 1709 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 PPIP5K1Q6PFW1 1433 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 PLEKHG3A1L390 1219 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 NBPF1Q3BBV0 1214 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 NLRP13Q86W25 1043 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 USP35Q9P2H5 1018 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 NRAPQ86VF7 1730 aa11.12□□□□□ -0.63
VPS50-204ENST00000438395 SPATA31A1Q5TZJ5 1347 aa11.11□□□□□ -0.63
VPS50-204ENST00000438395 ZBTB7CA1YPR0 619 aa11.11□□□□□ -0.63
VPS50-204ENST00000438395 PDE3BQ13370 1112 aa11.11□□□□□ -0.63
VPS50-204ENST00000438395 BRWD3Q6RI45 1802 aa11.1□□□□□ -0.63
VPS50-204ENST00000438395 IRX5P78411 483 aaPredicted RBP11.1□□□□□ -0.63
VPS50-204ENST00000438395 FAM182BQ5T319 152 aa11.1□□□□□ -0.63
VPS50-204ENST00000438395 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
VPS50-204ENST00000438395 BRD4O60885 1362 aaPredicted RBP11.1□□□□□ -0.63
VPS50-204ENST00000438395 EVC2Q86UK5 1308 aa11.09□□□□□ -0.63
VPS50-204ENST00000438395 SSH2Q76I76 1423 aa11.09□□□□□ -0.63
VPS50-204ENST00000438395 TOPAZ1Q8N9V7 1692 aa11.09□□□□□ -0.63
VPS50-204ENST00000438395 ROCK2O75116 1388 aaKnown RBP11.09□□□□□ -0.63
VPS50-204ENST00000438395 FAM196AQ6ZSG2 479 aa11.09□□□□□ -0.63
VPS50-204ENST00000438395 USP19O94966 1318 aa11.09□□□□□ -0.63
VPS50-204ENST00000438395 CPDO75976 1380 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 PSDA5PKW4 1024 aaPredicted RBP11.08□□□□□ -0.64
VPS50-204ENST00000438395 GCP02774 474 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 PLCG2P16885 1265 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 NLRP6P59044 892 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 EN1Q05925 392 aaPredicted RBP11.08□□□□□ -0.64
VPS50-204ENST00000438395 PDAP1Q13442 181 aaKnown RBP11.08□□□□□ -0.64
VPS50-204ENST00000438395 NEUROD1Q13562 356 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 TCP11L2Q8N4U5 519 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 L3MBTL2Q969R5 705 aa11.08□□□□□ -0.64
VPS50-204ENST00000438395 PHRF1Q9P1Y6 1649 aaKnown RBP11.08□□□□□ -0.64
VPS50-204ENST00000438395 CRYBG1Q9Y4K1 1723 aa11.07□□□□□ -0.64
VPS50-204ENST00000438395 BARGINQ6ZT62 677 aa11.07□□□□□ -0.64
VPS50-204ENST00000438395 RNF25Q96BH1 459 aaPredicted RBP11.07□□□□□ -0.64
VPS50-204ENST00000438395 CABP1Q9NZU7 370 aa11.07□□□□□ -0.64
VPS50-204ENST00000438395 THSD7AQ9UPZ6 1657 aa11.07□□□□□ -0.64
VPS50-204ENST00000438395 NRKQ7Z2Y5 1582 aa11.07□□□□□ -0.64
VPS50-204ENST00000438395 TRIM37O94972 964 aa11.06□□□□□ -0.64
VPS50-204ENST00000438395 LARP1Q6PKG0 1096 aaKnown RBP11.06□□□□□ -0.64
VPS50-204ENST00000438395 THRAP3Q9Y2W1 955 aaKnown RBP11.06□□□□□ -0.64
VPS50-204ENST00000438395 USP6P35125 1406 aa11.06□□□□□ -0.64
VPS50-204ENST00000438395 QRICH2Q9H0J4 1663 aa11.05□□□□□ -0.64
VPS50-204ENST00000438395 DISP2A7MBM2 1401 aa11.05□□□□□ -0.64
VPS50-204ENST00000438395 APBA3O96018 575 aa11.05□□□□□ -0.64
VPS50-204ENST00000438395 RGPD1P0DJD0 1748 aa11.05□□□□□ -0.64
VPS50-204ENST00000438395 SCUBE2Q9NQ36 999 aa11.05□□□□□ -0.64
VPS50-204ENST00000438395 PARD3Q8TEW0 1356 aa11.04□□□□□ -0.64
VPS50-204ENST00000438395 C11orf95C9JLR9 678 aaPredicted RBP11.04□□□□□ -0.64
VPS50-204ENST00000438395 GOLGA2Q08379 1002 aa11.04□□□□□ -0.64
VPS50-204ENST00000438395 R3HDM1Q15032 1099 aaKnown RBP11.04□□□□□ -0.64
VPS50-204ENST00000438395 AATKQ6ZMQ8 1374 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 CRB1P82279 1406 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 SOX12O15370 315 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 MAMSTRQ6ZN01 415 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 TOM1L2Q6ZVM7 507 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 SIN3AQ96ST3 1273 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 OCEL1Q9H607 264 aa11.03□□□□□ -0.64
VPS50-204ENST00000438395 COL5A2P05997 1499 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms