RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 ADAMTS2O95450 1211 aa16.56■□□□□ 0.24
LINC00339-204ENST00000434233 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
LINC00339-204ENST00000434233 COL18A1P39060 1754 aa16.56■□□□□ 0.24
LINC00339-204ENST00000434233 HSP90AB2PQ58FF8 381 aa16.55■□□□□ 0.24
LINC00339-204ENST00000434233 AXIN2Q9Y2T1 843 aa16.55■□□□□ 0.24
LINC00339-204ENST00000434233 ABCC6O95255 1503 aa16.55■□□□□ 0.24
LINC00339-204ENST00000434233 CDK12Q9NYV4 1490 aaPredicted RBP16.54■□□□□ 0.24
LINC00339-204ENST00000434233 PEAK1Q9H792 1746 aa16.54■□□□□ 0.24
LINC00339-204ENST00000434233 BLMP54132 1417 aaPredicted RBP16.53■□□□□ 0.24
LINC00339-204ENST00000434233 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
LINC00339-204ENST00000434233 CCDC184Q52MB2 194 aa16.53■□□□□ 0.24
LINC00339-204ENST00000434233 COL14A1Q05707 1796 aaKnown RBP16.53■□□□□ 0.24
LINC00339-204ENST00000434233 LRP6O75581 1613 aa16.52■□□□□ 0.23
LINC00339-204ENST00000434233 RGPD5Q99666 1765 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 IL13P35225 146 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 ILDR1Q86SU0 546 aaPredicted RBP16.51■□□□□ 0.23
LINC00339-204ENST00000434233 NGLY1Q96IV0 654 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 MRS2Q9HD23 443 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 BTG4Q9NY30 223 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 NUDCQ9Y266 331 aa16.51■□□□□ 0.23
LINC00339-204ENST00000434233 LMO7Q8WWI1 1683 aa16.5■□□□□ 0.23
LINC00339-204ENST00000434233 CAMTA1Q9Y6Y1 1673 aa16.5■□□□□ 0.23
LINC00339-204ENST00000434233 EVA1CP58658 441 aa16.5■□□□□ 0.23
LINC00339-204ENST00000434233 EIF4A2Q14240 407 aaKnown RBP16.5■□□□□ 0.23
LINC00339-204ENST00000434233 MEX3CQ5U5Q3 659 aaKnown RBP16.5■□□□□ 0.23
LINC00339-204ENST00000434233 FNBP4Q8N3X1 1017 aaPredicted RBP16.5■□□□□ 0.23
LINC00339-204ENST00000434233 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
LINC00339-204ENST00000434233 C8orf37Q96NL8 207 aa16.5■□□□□ 0.23
LINC00339-204ENST00000434233 COL3A1P02461 1466 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-204ENST00000434233 LTV1Q96GA3 475 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-204ENST00000434233 SLIT2O94813 1529 aa16.48■□□□□ 0.23
LINC00339-204ENST00000434233 ERBB3P21860 1342 aa16.47■□□□□ 0.23
LINC00339-204ENST00000434233 PNISRQ8TF01 805 aaKnown RBP16.47■□□□□ 0.23
LINC00339-204ENST00000434233 NWD2Q9ULI1 1742 aa16.47■□□□□ 0.23
LINC00339-204ENST00000434233 CSB-PGBD3P0DP91 1061 aa16.46■□□□□ 0.23
LINC00339-204ENST00000434233 UNC5CLQ8IV45 518 aa16.46■□□□□ 0.23
LINC00339-204ENST00000434233 EYA1Q99502 592 aa16.46■□□□□ 0.23
LINC00339-204ENST00000434233 COL5A2P05997 1499 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-204ENST00000434233 WDR17Q8IZU2 1322 aa16.45■□□□□ 0.22
LINC00339-204ENST00000434233 STRN4Q9NRL3 753 aa16.45■□□□□ 0.22
LINC00339-204ENST00000434233 PLCH1Q4KWH8 1693 aa16.45■□□□□ 0.22
LINC00339-204ENST00000434233 U2SURPO15042 1029 aaKnown RBP16.44■□□□□ 0.22
LINC00339-204ENST00000434233 WDR43Q15061 677 aaKnown RBP eCLIP16.44■□□□□ 0.22
LINC00339-204ENST00000434233 NBPF6Q5VWK0 638 aa16.44■□□□□ 0.22
LINC00339-204ENST00000434233 NBPF4Q96M43 638 aa16.44■□□□□ 0.22
LINC00339-204ENST00000434233 USP21Q9UK80 565 aa16.44■□□□□ 0.22
LINC00339-204ENST00000434233 BCL9LQ86UU0 1499 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 LARP1Q6PKG0 1096 aaKnown RBP16.43■□□□□ 0.22
LINC00339-204ENST00000434233 TOM1L2Q6ZVM7 507 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 CARD10Q9BWT7 1032 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 NLRP2Q9NX02 1062 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 AFF2P51816 1311 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 IGSF1Q8N6C5 1336 aa16.43■□□□□ 0.22
LINC00339-204ENST00000434233 FCHSD2O94868 740 aa16.42■□□□□ 0.22
LINC00339-204ENST00000434233 U2AF1L5P0DN76 240 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-204ENST00000434233 U2AF1Q01081 240 aaKnown RBP eCLIP16.42■□□□□ 0.22
LINC00339-204ENST00000434233 PNNQ9H307 717 aaKnown RBP16.42■□□□□ 0.22
LINC00339-204ENST00000434233 ADAMTS8Q9UP79 889 aa16.42■□□□□ 0.22
LINC00339-204ENST00000434233 FAM208AQ9UK61 1670 aaKnown RBP16.42■□□□□ 0.22
LINC00339-204ENST00000434233 NRAPQ86VF7 1730 aa16.42■□□□□ 0.22
LINC00339-204ENST00000434233 RGPD2P0DJD1 1756 aa16.41■□□□□ 0.22
LINC00339-204ENST00000434233 VPS72Q15906 364 aa16.41■□□□□ 0.22
LINC00339-204ENST00000434233 CRB1P82279 1406 aa16.41■□□□□ 0.22
LINC00339-204ENST00000434233 RGPD1P0DJD0 1748 aa16.4■□□□□ 0.22
LINC00339-204ENST00000434233 SULT6B1Q6IMI4 303 aa16.4■□□□□ 0.22
LINC00339-204ENST00000434233 FAM9BQ8IZU0 186 aa16.4■□□□□ 0.22
LINC00339-204ENST00000434233 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.39■□□□□ 0.21
LINC00339-204ENST00000434233 ZNF772Q68DY9 489 aaPredicted RBP16.39■□□□□ 0.21
LINC00339-204ENST00000434233 THRAP3Q9Y2W1 955 aaKnown RBP16.39■□□□□ 0.21
LINC00339-204ENST00000434233 KDRP35968 1356 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 NCAPD2Q15021 1401 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 HMOX1P09601 288 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 QTRT2Q9H974 415 aaKnown RBP16.38■□□□□ 0.21
LINC00339-204ENST00000434233 TRPC5Q9UL62 973 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-204ENST00000434233 SPATA31A1Q5TZJ5 1347 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
LINC00339-204ENST00000434233 USHBP1Q8N6Y0 703 aa16.37■□□□□ 0.21
LINC00339-204ENST00000434233 RSPH6AQ9H0K4 717 aa16.37■□□□□ 0.21
LINC00339-204ENST00000434233 AEBP1Q8IUX7 1158 aa16.36■□□□□ 0.21
LINC00339-204ENST00000434233 TCP11L2Q8N4U5 519 aa16.36■□□□□ 0.21
LINC00339-204ENST00000434233 PLEKHF1Q96S99 279 aa16.36■□□□□ 0.21
LINC00339-204ENST00000434233 CCDC9Q9Y3X0 531 aaKnown RBP16.36■□□□□ 0.21
LINC00339-204ENST00000434233 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
LINC00339-204ENST00000434233 RUNDC1Q96C34 613 aa16.35■□□□□ 0.21
LINC00339-204ENST00000434233 GJD4Q96KN9 370 aaPredicted RBP16.35■□□□□ 0.21
LINC00339-204ENST00000434233 USP35Q9P2H5 1018 aa16.35■□□□□ 0.21
LINC00339-204ENST00000434233 ATRNO75882 1429 aa16.35■□□□□ 0.21
LINC00339-204ENST00000434233 NEFMP07197 916 aa16.34■□□□□ 0.21
LINC00339-204ENST00000434233 TATP17735 454 aaPredicted RBP16.34■□□□□ 0.21
LINC00339-204ENST00000434233 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
LINC00339-204ENST00000434233 RAPGEF4Q8WZA2 1011 aa16.34■□□□□ 0.21
LINC00339-204ENST00000434233 CDCA7Q9BWT1 371 aaPredicted RBP16.34■□□□□ 0.21
LINC00339-204ENST00000434233 IL2RBP14784 551 aa16.33■□□□□ 0.2
LINC00339-204ENST00000434233 PLEKHG2Q9H7P9 1386 aa16.33■□□□□ 0.2
LINC00339-204ENST00000434233 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.32■□□□□ 0.2
LINC00339-204ENST00000434233 RGS17Q9UGC6 210 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-204ENST00000434233 ONECUT3O60422 494 aaPredicted RBP16.31■□□□□ 0.2
LINC00339-204ENST00000434233 AMOTQ4VCS5 1084 aa16.31■□□□□ 0.2
LINC00339-204ENST00000434233 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms