RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 USP17L15C9J2P7 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L10C9JJH3 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L13C9JLJ4 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L12C9JPN9 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L11C9JVI0 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L21D6R901 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L18D6R9N7 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L22D6RA61 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L17D6RBQ6 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L19D6RCP7 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L20D6RJB6 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 PIK3CDO00329 1044 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 MMP16P51512 607 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 USP17L24Q0WX57 530 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 KCNH2Q12809 1159 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 SWI5Q1ZZU3 235 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 CDCA8Q53HL2 280 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 LARP1Q6PKG0 1096 aaKnown RBP6.72□□□□□ -1.33
HMGB3-203ENST00000430118 CLP1Q92989 425 aaKnown RBP6.72□□□□□ -1.33
HMGB3-203ENST00000430118 CDCA7Q9BWT1 371 aaPredicted RBP6.72□□□□□ -1.33
HMGB3-203ENST00000430118 MAP10Q9P2G4 905 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 CEP126Q9P2H0 1117 aa6.72□□□□□ -1.33
HMGB3-203ENST00000430118 GOLGA8CPA6NN73 597 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 E9PSI1 815 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 ARID4AP29374 1257 aaPredicted RBP6.71□□□□□ -1.34
HMGB3-203ENST00000430118 APLP1P51693 650 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 TRIM50Q86XT4 487 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 PHTF2Q8N3S3 785 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 HPS5Q9UPZ3 1129 aa6.71□□□□□ -1.34
HMGB3-203ENST00000430118 CARNS1A5YM72 827 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 SSFA2P28290 1259 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 CTHP32929 405 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 ATP1A2P50993 1020 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 PTK7Q13308 1070 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 FOXD4L5Q5VV16 416 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-203ENST00000430118 NYAP1Q6ZVC0 841 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 CCDC125Q86Z20 511 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 RNF135Q8IUD6 432 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 C1orf216Q8TAB5 229 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 FAM174AQ8TBP5 190 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 STK32AQ8WU08 396 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 FOXD4L4Q8WXT5 416 aaPredicted RBP6.7□□□□□ -1.34
HMGB3-203ENST00000430118 NUDT12Q9BQG2 462 aa6.7□□□□□ -1.34
HMGB3-203ENST00000430118 MKRN1Q9UHC7 482 aaKnown RBP6.7□□□□□ -1.34
HMGB3-203ENST00000430118 RBM25P49756 843 aaKnown RBP6.69□□□□□ -1.34
HMGB3-203ENST00000430118 NCOA4Q13772 614 aa6.69□□□□□ -1.34
HMGB3-203ENST00000430118 EML3Q32P44 896 aa6.69□□□□□ -1.34
HMGB3-203ENST00000430118 PLPP7Q8NBV4 271 aa6.69□□□□□ -1.34
HMGB3-203ENST00000430118 FAM200AQ8TCP9 573 aa6.69□□□□□ -1.34
HMGB3-203ENST00000430118 PEG3Q9GZU2 1588 aa6.69□□□□□ -1.34
HMGB3-203ENST00000430118 RASA1P20936 1047 aa6.68□□□□□ -1.34
HMGB3-203ENST00000430118 PTPN5P54829 565 aa6.68□□□□□ -1.34
HMGB3-203ENST00000430118 CRTC2Q53ET0 693 aaPredicted RBP6.68□□□□□ -1.34
HMGB3-203ENST00000430118 PHLDB3Q6NSJ2 640 aa6.68□□□□□ -1.34
HMGB3-203ENST00000430118 ANKMY2Q8IV38 441 aa6.68□□□□□ -1.34
HMGB3-203ENST00000430118 SPSB2Q99619 263 aa6.68□□□□□ -1.34
HMGB3-203ENST00000430118 FAM69CQ0P6D2 419 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 TRAF7Q6Q0C0 670 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 LARGE2Q8N3Y3 721 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 OCSTAMPQ9BR26 566 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 ARHGAP9Q9BRR9 750 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 PCDHB9Q9Y5E1 797 aa6.67□□□□□ -1.34
HMGB3-203ENST00000430118 CEP164Q9UPV0 1460 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 RNF20Q5VTR2 975 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 SH3BP5LQ7L8J4 393 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 SIX5Q8N196 739 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 FAM160A2Q8N612 972 aaPredicted RBP6.66□□□□□ -1.34
HMGB3-203ENST00000430118 ADAM32Q8TC27 787 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 WNT2BQ93097 391 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 NOD1Q9Y239 953 aa6.66□□□□□ -1.34
HMGB3-203ENST00000430118 RIMBP3CA6NJZ7 1639 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 RIMBP3BA6NNM3 1639 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 RIMBP3Q9UFD9 1639 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 ADH1BP00325 375 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 ZBTB33Q86T24 672 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 DEPDC4Q8N2C3 294 aa6.65□□□□□ -1.34
HMGB3-203ENST00000430118 CADPSQ9ULU8 1353 aa6.65□□□□□ -1.35
HMGB3-203ENST00000430118 RBM47A0AV96 593 aaKnown RBP6.64□□□□□ -1.35
HMGB3-203ENST00000430118 ATP2B4P23634 1241 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 BCAMP50895 628 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 THSD4Q6ZMP0 1018 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 SH3RF1Q7Z6J0 888 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 OGFOD1Q8N543 542 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 SIRT1Q96EB6 747 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 DNAAF2Q9NVR5 837 aaKnown RBP6.64□□□□□ -1.35
HMGB3-203ENST00000430118 EGFL7Q9UHF1 273 aa6.64□□□□□ -1.35
HMGB3-203ENST00000430118 SOWAHDA6NJG2 315 aa6.63□□□□□ -1.35
HMGB3-203ENST00000430118 DZIP3Q86Y13 1208 aaKnown RBP6.63□□□□□ -1.35
HMGB3-203ENST00000430118 SEPT12Q8IYM1 358 aa6.63□□□□□ -1.35
HMGB3-203ENST00000430118 UNC93B1Q9H1C4 597 aa6.63□□□□□ -1.35
HMGB3-203ENST00000430118 CDV3Q9UKY7 258 aaKnown RBP6.63□□□□□ -1.35
HMGB3-203ENST00000430118 ARHGEF11O15085 1522 aa6.62□□□□□ -1.35
HMGB3-203ENST00000430118 DPYDQ12882 1025 aa6.62□□□□□ -1.35
HMGB3-203ENST00000430118 BPHLQ86WA6 291 aaPredicted RBP6.62□□□□□ -1.35
HMGB3-203ENST00000430118 DOLKQ9UPQ8 538 aa6.62□□□□□ -1.35
HMGB3-203ENST00000430118 RBM19Q9Y4C8 960 aaKnown RBP6.62□□□□□ -1.35
HMGB3-203ENST00000430118 ZPR1O75312 459 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 SEC13P55735 322 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 CLDN10P78369 228 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 NBPF20Q3BBV1 942 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms