RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 GFRA3O60609 400 aa11.56□□□□□ -0.56
CCDC88A-206ENST00000430086 SEMA3FQ13275 785 aa11.56□□□□□ -0.56
CCDC88A-206ENST00000430086 LAPTM4AQ15012 233 aa11.56□□□□□ -0.56
CCDC88A-206ENST00000430086 KCTD15Q96SI1 283 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-206ENST00000430086 ESPNB1AK53 854 aa11.55□□□□□ -0.56
CCDC88A-206ENST00000430086 J3QL48 77 aa11.55□□□□□ -0.56
CCDC88A-206ENST00000430086 SMPD1P17405 629 aa11.55□□□□□ -0.56
CCDC88A-206ENST00000430086 NR5A1Q13285 461 aa11.55□□□□□ -0.56
CCDC88A-206ENST00000430086 CEP126Q9P2H0 1117 aa11.54□□□□□ -0.56
CCDC88A-206ENST00000430086 WASF2Q9Y6W5 498 aa11.54□□□□□ -0.56
CCDC88A-206ENST00000430086 SEPT12Q8IYM1 358 aa11.53□□□□□ -0.56
CCDC88A-206ENST00000430086 ADAMTS19Q8TE59 1207 aa11.53□□□□□ -0.56
CCDC88A-206ENST00000430086 FSHRP23945 695 aa11.52□□□□□ -0.57
CCDC88A-206ENST00000430086 CCDC125Q86Z20 511 aa11.52□□□□□ -0.57
CCDC88A-206ENST00000430086 IRX2Q9BZI1 471 aaPredicted RBP11.52□□□□□ -0.57
CCDC88A-206ENST00000430086 GIGYF1O75420 1035 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-206ENST00000430086 INTS6LQ5JSJ4 861 aaKnown RBP11.51□□□□□ -0.57
CCDC88A-206ENST00000430086 HDGFL1Q5TGJ6 251 aa11.51□□□□□ -0.57
CCDC88A-206ENST00000430086 ZNF777Q9ULD5 760 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-206ENST00000430086 NNTQ13423 1086 aa11.5□□□□□ -0.57
CCDC88A-206ENST00000430086 RNF20Q5VTR2 975 aa11.5□□□□□ -0.57
CCDC88A-206ENST00000430086 GLMNQ92990 594 aa11.5□□□□□ -0.57
CCDC88A-206ENST00000430086 DGAT1O75907 488 aa11.49□□□□□ -0.57
CCDC88A-206ENST00000430086 PHTF2Q8N3S3 785 aa11.49□□□□□ -0.57
CCDC88A-206ENST00000430086 FAM187AA6NFU0 413 aa11.48□□□□□ -0.57
CCDC88A-206ENST00000430086 NR3C2P08235 984 aa11.48□□□□□ -0.57
CCDC88A-206ENST00000430086 DHX9Q08211 1270 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-206ENST00000430086 CCDC116Q8IYX3 515 aa11.48□□□□□ -0.57
CCDC88A-206ENST00000430086 AVPP01185 164 aa11.47□□□□□ -0.57
CCDC88A-206ENST00000430086 CALR3Q96L12 384 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-206ENST00000430086 SLFNL1Q499Z3 407 aa11.46□□□□□ -0.57
CCDC88A-206ENST00000430086 HPS1Q92902 700 aa11.46□□□□□ -0.57
CCDC88A-206ENST00000430086 CHIC2Q9UKJ5 165 aa11.46□□□□□ -0.57
CCDC88A-206ENST00000430086 PKDCCQ504Y2 493 aa11.45□□□□□ -0.58
CCDC88A-206ENST00000430086 NFATC2IPQ8NCF5 419 aa11.45□□□□□ -0.58
CCDC88A-206ENST00000430086 KLF16Q9BXK1 252 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-206ENST00000430086 EMILIN1Q9Y6C2 1016 aa11.45□□□□□ -0.58
CCDC88A-206ENST00000430086 PPP1R26Q5T8A7 1209 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-206ENST00000430086 RNF135Q8IUD6 432 aa11.44□□□□□ -0.58
CCDC88A-206ENST00000430086 ERVH48-1M5A8F1 160 aa11.43□□□□□ -0.58
CCDC88A-206ENST00000430086 TRIM52Q96A61 297 aa11.43□□□□□ -0.58
CCDC88A-206ENST00000430086 RAB15P59190 212 aa11.42□□□□□ -0.58
CCDC88A-206ENST00000430086 CCDC85AQ96PX6 553 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-206ENST00000430086 UCN2Q96RP3 112 aa11.42□□□□□ -0.58
CCDC88A-206ENST00000430086 PGPEP1Q9NXJ5 209 aa11.42□□□□□ -0.58
CCDC88A-206ENST00000430086 PIK3CDO00329 1044 aa11.41□□□□□ -0.58
CCDC88A-206ENST00000430086 MAP7D1Q3KQU3 841 aa11.41□□□□□ -0.58
CCDC88A-206ENST00000430086 TIMP2P16035 220 aa11.4□□□□□ -0.58
CCDC88A-206ENST00000430086 SMCPP49901 116 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-206ENST00000430086 WDR4P57081 412 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-206ENST00000430086 CTC1Q2NKJ3 1217 aa11.4□□□□□ -0.58
CCDC88A-206ENST00000430086 ARID3CA6NKF2 412 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 CRIPAKQ8N1N5 446 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 PLPP7Q8NBV4 271 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 ITPKCQ96DU7 683 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 TMPRSS4Q9NRS4 437 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 PCDHB11Q9Y5F2 797 aa11.39□□□□□ -0.59
CCDC88A-206ENST00000430086 ZIC2O95409 532 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-206ENST00000430086 TSGA10IPQ3SY00 556 aa11.38□□□□□ -0.59
CCDC88A-206ENST00000430086 TRAF7Q6Q0C0 670 aa11.38□□□□□ -0.59
CCDC88A-206ENST00000430086 DOLKQ9UPQ8 538 aa11.38□□□□□ -0.59
CCDC88A-206ENST00000430086 ATP9BO43861 1147 aa11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 LZTS3O60299 673 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 SKIP12755 728 aa11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 MYT1Q01538 1121 aa11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 TBC1D9Q6ZT07 1266 aa11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 ZNF784Q8NCA9 323 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-206ENST00000430086 CAPN5O15484 640 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 LILRA1O75019 489 aa11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 ERVK-9P63128 1117 aa11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 PPP1R12CQ9BZL4 782 aa11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 C1orf115Q9H7X2 142 aa11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 ZFAND3Q9H8U3 227 aa11.36□□□□□ -0.59
CCDC88A-206ENST00000430086 CDCA7Q9BWT1 371 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-206ENST00000430086 TFIP11Q9UBB9 837 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-206ENST00000430086 PALM3A6NDB9 673 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-206ENST00000430086 CC2D2BQ6DHV5 1058 aa11.34□□□□□ -0.59
CCDC88A-206ENST00000430086 Q6ZVU0 165 aa11.34□□□□□ -0.59
CCDC88A-206ENST00000430086 PLEKHM2Q8IWE5 1019 aa11.34□□□□□ -0.59
CCDC88A-206ENST00000430086 SERPINA10Q9UK55 444 aa11.34□□□□□ -0.59
CCDC88A-206ENST00000430086 USP17L5A8MUK1 530 aa11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 SUPT5HO00267 1087 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 AXIN1O15169 862 aa11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 USP4Q13107 963 aa11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 Q6ZNB5 142 aa11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 CYLDQ9NQC7 956 aa11.33□□□□□ -0.6
CCDC88A-206ENST00000430086 SCTRP47872 440 aa11.32□□□□□ -0.6
CCDC88A-206ENST00000430086 SIRT1Q96EB6 747 aa11.32□□□□□ -0.6
CCDC88A-206ENST00000430086 CCDC97Q96F63 343 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-206ENST00000430086 AAASQ9NRG9 546 aa11.32□□□□□ -0.6
CCDC88A-206ENST00000430086 MAFBQ9Y5Q3 323 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-206ENST00000430086 ADD1P35611 737 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-206ENST00000430086 EML3Q32P44 896 aa11.31□□□□□ -0.6
CCDC88A-206ENST00000430086 USP17L3A6NCW0 530 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 USP17L4A6NCW7 530 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 MYCP01106 439 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 CBLBQ13191 982 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 NCOA4Q13772 614 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 OXLD1Q5BKU9 147 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 CFAP70Q5T0N1 1121 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms