RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 CCDC146Q8IYE0 955 aa16.84■□□□□ 0.29
HMGB3P4-201ENST00000428776 PHLPP1O60346 1717 aa16.83■□□□□ 0.28
HMGB3P4-201ENST00000428776 FCHSD2O94868 740 aa16.83■□□□□ 0.28
HMGB3P4-201ENST00000428776 EIF4A2Q14240 407 aaKnown RBP16.83■□□□□ 0.28
HMGB3P4-201ENST00000428776 ARHGEF25Q86VW2 580 aa16.82■□□□□ 0.28
HMGB3P4-201ENST00000428776 IP6K1Q92551 441 aa16.82■□□□□ 0.28
HMGB3P4-201ENST00000428776 COL18A1P39060 1754 aa16.82■□□□□ 0.28
HMGB3P4-201ENST00000428776 APAF1O14727 1248 aa16.81■□□□□ 0.28
HMGB3P4-201ENST00000428776 RGPD2P0DJD1 1756 aa16.81■□□□□ 0.28
HMGB3P4-201ENST00000428776 ABCC6O95255 1503 aa16.8■□□□□ 0.28
HMGB3P4-201ENST00000428776 PDE3BQ13370 1112 aa16.8■□□□□ 0.28
HMGB3P4-201ENST00000428776 NCBP3Q53F19 620 aaKnown RBP16.8■□□□□ 0.28
HMGB3P4-201ENST00000428776 PLEKHF1Q96S99 279 aa16.8■□□□□ 0.28
HMGB3P4-201ENST00000428776 DLG5Q8TDM6 1919 aa16.8■□□□□ 0.28
HMGB3P4-201ENST00000428776 COL22A1Q8NFW1 1626 aaPredicted RBP16.79■□□□□ 0.28
HMGB3P4-201ENST00000428776 LRRC59Q96AG4 307 aaKnown RBP16.79■□□□□ 0.28
HMGB3P4-201ENST00000428776 RSPH6AQ9H0K4 717 aa16.79■□□□□ 0.28
HMGB3P4-201ENST00000428776 MAPK8IP3Q9UPT6 1336 aa16.78■□□□□ 0.28
HMGB3P4-201ENST00000428776 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
HMGB3P4-201ENST00000428776 TCP11L2Q8N4U5 519 aa16.78■□□□□ 0.28
HMGB3P4-201ENST00000428776 FAM208AQ9UK61 1670 aaKnown RBP16.78■□□□□ 0.28
HMGB3P4-201ENST00000428776 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
HMGB3P4-201ENST00000428776 PLEKHG5O94827 1062 aa16.77■□□□□ 0.28
HMGB3P4-201ENST00000428776 NEFMP07197 916 aa16.77■□□□□ 0.28
HMGB3P4-201ENST00000428776 SALL2Q9Y467 1007 aaPredicted RBP16.77■□□□□ 0.28
HMGB3P4-201ENST00000428776 CPDO75976 1380 aa16.77■□□□□ 0.27
HMGB3P4-201ENST00000428776 HMOX1P09601 288 aa16.76■□□□□ 0.27
HMGB3P4-201ENST00000428776 CERKQ8TCT0 537 aa16.76■□□□□ 0.27
HMGB3P4-201ENST00000428776 CABLES1Q8TDN4 633 aa16.76■□□□□ 0.27
HMGB3P4-201ENST00000428776 IGSF1Q8N6C5 1336 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 ZNF521Q96K83 1311 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 ZBTB7CA1YPR0 619 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 UBAP1LF5GYI3 381 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 PRKAR2BP31323 418 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 ZC3H6P61129 1189 aaKnown RBP16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 CAMTA1Q9Y6Y1 1673 aa16.75■□□□□ 0.27
HMGB3P4-201ENST00000428776 CCDC27Q2M243 656 aa16.74■□□□□ 0.27
HMGB3P4-201ENST00000428776 SULT6B1Q6IMI4 303 aa16.74■□□□□ 0.27
HMGB3P4-201ENST00000428776 EYA1Q99502 592 aa16.74■□□□□ 0.27
HMGB3P4-201ENST00000428776 KDRP35968 1356 aa16.74■□□□□ 0.27
HMGB3P4-201ENST00000428776 TMPOP42166 694 aaKnown RBP16.72■□□□□ 0.27
HMGB3P4-201ENST00000428776 HAP1P54257 671 aaPredicted RBP16.72■□□□□ 0.27
HMGB3P4-201ENST00000428776 PIP4K2BP78356 416 aa16.72■□□□□ 0.27
HMGB3P4-201ENST00000428776 LTV1Q96GA3 475 aaPredicted RBP16.72■□□□□ 0.27
HMGB3P4-201ENST00000428776 LMO7Q8WWI1 1683 aa16.72■□□□□ 0.27
HMGB3P4-201ENST00000428776 PHF23Q9BUL5 403 aaPredicted RBP16.71■□□□□ 0.27
HMGB3P4-201ENST00000428776 KIAA0232Q92628 1395 aa16.71■□□□□ 0.27
HMGB3P4-201ENST00000428776 GOLGA2Q08379 1002 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 NEUROD2Q15784 382 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 AEBP1Q8IUX7 1158 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 WWC1Q8IX03 1113 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 PHACTR3Q96KR7 559 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 AXIN2Q9Y2T1 843 aa16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 RRP7AQ9Y3A4 280 aaKnown RBP16.7■□□□□ 0.26
HMGB3P4-201ENST00000428776 NFE2L2Q16236 605 aa16.69■□□□□ 0.26
HMGB3P4-201ENST00000428776 WDR63Q8IWG1 891 aa16.69■□□□□ 0.26
HMGB3P4-201ENST00000428776 ANKRD24Q8TF21 1146 aa16.69■□□□□ 0.26
HMGB3P4-201ENST00000428776 COL14A1Q05707 1796 aaKnown RBP16.69■□□□□ 0.26
HMGB3P4-201ENST00000428776 RIPK4P57078 832 aa16.68■□□□□ 0.26
HMGB3P4-201ENST00000428776 NBPF6Q5VWK0 638 aa16.68■□□□□ 0.26
HMGB3P4-201ENST00000428776 NBPF4Q96M43 638 aa16.68■□□□□ 0.26
HMGB3P4-201ENST00000428776 NCAPD2Q15021 1401 aa16.68■□□□□ 0.26
HMGB3P4-201ENST00000428776 CDCA7LQ96GN5 454 aa16.67■□□□□ 0.26
HMGB3P4-201ENST00000428776 PRDM11Q9NQV5 511 aa16.67■□□□□ 0.26
HMGB3P4-201ENST00000428776 ERBB3P21860 1342 aa16.67■□□□□ 0.26
HMGB3P4-201ENST00000428776 VIRMAQ69YN4 1812 aaKnown RBP16.66■□□□□ 0.26
HMGB3P4-201ENST00000428776 SLFN5Q08AF3 891 aa16.66■□□□□ 0.26
HMGB3P4-201ENST00000428776 CHRNA2Q15822 529 aa16.66■□□□□ 0.26
HMGB3P4-201ENST00000428776 TRIM35Q9UPQ4 493 aa16.66■□□□□ 0.26
HMGB3P4-201ENST00000428776 LMOD3Q0VAK6 560 aa16.65■□□□□ 0.26
HMGB3P4-201ENST00000428776 E9PSI1 815 aa16.64■□□□□ 0.25
HMGB3P4-201ENST00000428776 TRMT2AQ8IZ69 625 aaKnown RBP16.64■□□□□ 0.25
HMGB3P4-201ENST00000428776 USHBP1Q8N6Y0 703 aa16.63■□□□□ 0.25
HMGB3P4-201ENST00000428776 PLCH1Q4KWH8 1693 aa16.62■□□□□ 0.25
HMGB3P4-201ENST00000428776 IL16Q14005 1332 aa16.62■□□□□ 0.25
HMGB3P4-201ENST00000428776 COL5A2P05997 1499 aaPredicted RBP16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 FAM83GA6ND36 823 aa16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 CSB-PGBD3P0DP91 1061 aa16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 CALD1Q05682 793 aaKnown RBP16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 DUSP27Q5VZP5 1158 aa16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 GAS2L2Q8NHY3 880 aa16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 NLRP2Q9NX02 1062 aa16.61■□□□□ 0.25
HMGB3P4-201ENST00000428776 PARP4Q9UKK3 1724 aaKnown RBP16.6■□□□□ 0.25
HMGB3P4-201ENST00000428776 MTHFSDQ2M296 383 aaKnown RBP16.6■□□□□ 0.25
HMGB3P4-201ENST00000428776 SPINK5Q9NQ38 1064 aaPredicted RBP16.6■□□□□ 0.25
HMGB3P4-201ENST00000428776 WDR17Q8IZU2 1322 aa16.6■□□□□ 0.25
HMGB3P4-201ENST00000428776 PLEKHG2Q9H7P9 1386 aa16.6■□□□□ 0.25
HMGB3P4-201ENST00000428776 NWD2Q9ULI1 1742 aa16.59■□□□□ 0.25
HMGB3P4-201ENST00000428776 MYH16Q9H6N6 1097 aa16.59■□□□□ 0.25
HMGB3P4-201ENST00000428776 HTATSF1O43719 755 aaKnown RBP16.58■□□□□ 0.24
HMGB3P4-201ENST00000428776 AMOTQ4VCS5 1084 aa16.58■□□□□ 0.24
HMGB3P4-201ENST00000428776 JCADQ9P266 1359 aa16.58■□□□□ 0.24
HMGB3P4-201ENST00000428776 PKD1L3Q7Z443 1732 aa16.58■□□□□ 0.24
HMGB3P4-201ENST00000428776 PLEKHO1Q53GL0 409 aaPredicted RBP16.57■□□□□ 0.24
HMGB3P4-201ENST00000428776 NRAPQ86VF7 1730 aa16.56■□□□□ 0.24
HMGB3P4-201ENST00000428776 LRRC37A3O60309 1634 aa16.56■□□□□ 0.24
HMGB3P4-201ENST00000428776 EVA1CP58658 441 aa16.56■□□□□ 0.24
HMGB3P4-201ENST00000428776 RAPGEF4Q8WZA2 1011 aa16.56■□□□□ 0.24
HMGB3P4-201ENST00000428776 SUPT16HQ9Y5B9 1047 aaKnown RBP16.56■□□□□ 0.24
HMGB3P4-201ENST00000428776 MAP3K5Q99683 1374 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms