RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KCTD15Q96SI1 283 aaPredicted RBP8.07□□□□□ -1.12
USP40-204ENST00000427947 PPP1R12CQ9BZL4 782 aa8.07□□□□□ -1.12
USP40-204ENST00000427947 MAP4K5Q9Y4K4 846 aa8.07□□□□□ -1.12
USP40-204ENST00000427947 PALM3A6NDB9 673 aaPredicted RBP8.06□□□□□ -1.12
USP40-204ENST00000427947 FSHRP23945 695 aa8.06□□□□□ -1.12
USP40-204ENST00000427947 TBC1D9Q6ZT07 1266 aa8.06□□□□□ -1.12
USP40-204ENST00000427947 SKIP12755 728 aa8.05□□□□□ -1.12
USP40-204ENST00000427947 CDK15Q96Q40 435 aa8.05□□□□□ -1.12
USP40-204ENST00000427947 TFIP11Q9UBB9 837 aaKnown RBP8.05□□□□□ -1.12
USP40-204ENST00000427947 ESPNB1AK53 854 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 ATP9BO43861 1147 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 GDF9O60383 454 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 RGS20O76081 388 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 ADH1CP00326 375 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 ALDH1A1P00352 501 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 INTS6LQ5JSJ4 861 aaKnown RBP8.04□□□□□ -1.12
USP40-204ENST00000427947 RNF20Q5VTR2 975 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 PHTF2Q8N3S3 785 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 MPNDQ8N594 471 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 NFATC2IPQ8NCF5 419 aa8.04□□□□□ -1.12
USP40-204ENST00000427947 TTC24A2A3L6 582 aaPredicted RBP8.03□□□□□ -1.12
USP40-204ENST00000427947 RFX1P22670 979 aa8.03□□□□□ -1.12
USP40-204ENST00000427947 LMOD1P29536 600 aaPredicted RBP8.03□□□□□ -1.12
USP40-204ENST00000427947 CFAP70Q5T0N1 1121 aa8.03□□□□□ -1.12
USP40-204ENST00000427947 TRIM67Q6ZTA4 783 aa8.03□□□□□ -1.12
USP40-204ENST00000427947 SEPT12Q8IYM1 358 aa8.03□□□□□ -1.12
USP40-204ENST00000427947 CYP4X1Q8N118 509 aa8.03□□□□□ -1.12
USP40-204ENST00000427947 SNIP1Q8TAD8 396 aaKnown RBP8.03□□□□□ -1.12
USP40-204ENST00000427947 CCDC85AQ96PX6 553 aaPredicted RBP8.03□□□□□ -1.12
USP40-204ENST00000427947 MAFBQ9Y5Q3 323 aaPredicted RBP8.03□□□□□ -1.12
USP40-204ENST00000427947 USP17L5A8MUK1 530 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 GRM5P41594 1212 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 DEPDC4Q8N2C3 294 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 PLPP7Q8NBV4 271 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 DOLKQ9UPQ8 538 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 WASF2Q9Y6W5 498 aa8.02□□□□□ -1.13
USP40-204ENST00000427947 PCDHB11Q9Y5F2 797 aa8.01□□□□□ -1.13
USP40-204ENST00000427947 USP17L3A6NCW0 530 aa8□□□□□ -1.13
USP40-204ENST00000427947 USP17L4A6NCW7 530 aa8□□□□□ -1.13
USP40-204ENST00000427947 J3QL48 77 aa8□□□□□ -1.13
USP40-204ENST00000427947 ERVH48-1M5A8F1 160 aa8□□□□□ -1.13
USP40-204ENST00000427947 PRR20EP86478 221 aa8□□□□□ -1.13
USP40-204ENST00000427947 PRR20CP86479 221 aa8□□□□□ -1.13
USP40-204ENST00000427947 PRR20DP86480 221 aa8□□□□□ -1.13
USP40-204ENST00000427947 PRR20BP86481 221 aa8□□□□□ -1.13
USP40-204ENST00000427947 PRR20AP86496 221 aa8□□□□□ -1.13
USP40-204ENST00000427947 NR5A1Q13285 461 aa8□□□□□ -1.13
USP40-204ENST00000427947 NCOA4Q13772 614 aa8□□□□□ -1.13
USP40-204ENST00000427947 MAP7D1Q3KQU3 841 aa8□□□□□ -1.13
USP40-204ENST00000427947 TSGA10IPQ3SY00 556 aa8□□□□□ -1.13
USP40-204ENST00000427947 OXLD1Q5BKU9 147 aa8□□□□□ -1.13
USP40-204ENST00000427947 USP17L2Q6R6M4 530 aa8□□□□□ -1.13
USP40-204ENST00000427947 USP17L1Q7RTZ2 530 aa8□□□□□ -1.13
USP40-204ENST00000427947 CCDC116Q8IYX3 515 aa8□□□□□ -1.13
USP40-204ENST00000427947 CHIC2Q9UKJ5 165 aa8□□□□□ -1.13
USP40-204ENST00000427947 NR3C2P08235 984 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 DHX9Q08211 1270 aaKnown RBP7.99□□□□□ -1.13
USP40-204ENST00000427947 NNTQ13423 1086 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 EML3Q32P44 896 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 TRAF7Q6Q0C0 670 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 TOR4AQ9NXH8 423 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 PDZRN3Q9UPQ7 1066 aa7.99□□□□□ -1.13
USP40-204ENST00000427947 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.98□□□□□ -1.13
USP40-204ENST00000427947 PPP1R26Q5T8A7 1209 aaPredicted RBP7.98□□□□□ -1.13
USP40-204ENST00000427947 CCDC125Q86Z20 511 aa7.98□□□□□ -1.13
USP40-204ENST00000427947 PLEKHM2Q8IWE5 1019 aa7.98□□□□□ -1.13
USP40-204ENST00000427947 CDCA7Q9BWT1 371 aaPredicted RBP7.98□□□□□ -1.13
USP40-204ENST00000427947 TMPRSS4Q9NRS4 437 aa7.98□□□□□ -1.13
USP40-204ENST00000427947 LZTS3O60299 673 aaPredicted RBP7.96□□□□□ -1.14
USP40-204ENST00000427947 SMPD1P17405 629 aa7.96□□□□□ -1.14
USP40-204ENST00000427947 ZNF784Q8NCA9 323 aaPredicted RBP7.96□□□□□ -1.14
USP40-204ENST00000427947 PBXIP1Q96AQ6 731 aa7.96□□□□□ -1.14
USP40-204ENST00000427947 CYLDQ9NQC7 956 aa7.96□□□□□ -1.14
USP40-204ENST00000427947 SCTRP47872 440 aa7.95□□□□□ -1.14
USP40-204ENST00000427947 CDCA8Q53HL2 280 aa7.95□□□□□ -1.14
USP40-204ENST00000427947 PGPEP1Q9NXJ5 209 aa7.95□□□□□ -1.14
USP40-204ENST00000427947 MKRN1Q9UHC7 482 aaKnown RBP7.95□□□□□ -1.14
USP40-204ENST00000427947 EMILIN1Q9Y6C2 1016 aa7.95□□□□□ -1.14
USP40-204ENST00000427947 MYCP01106 439 aaPredicted RBP7.94□□□□□ -1.14
USP40-204ENST00000427947 USP4Q13107 963 aa7.94□□□□□ -1.14
USP40-204ENST00000427947 KANK4Q5T7N3 995 aaPredicted RBP7.94□□□□□ -1.14
USP40-204ENST00000427947 SIRT1Q96EB6 747 aa7.94□□□□□ -1.14
USP40-204ENST00000427947 ESF1Q9H501 851 aaKnown RBP7.94□□□□□ -1.14
USP40-204ENST00000427947 VRTNQ9H8Y1 702 aa7.94□□□□□ -1.14
USP40-204ENST00000427947 NOD1Q9Y239 953 aa7.94□□□□□ -1.14
USP40-204ENST00000427947 FAM187AA6NFU0 413 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 ATP5J2-PTCD1G3V325 749 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 WDR4P57081 412 aaKnown RBP7.93□□□□□ -1.14
USP40-204ENST00000427947 ERVK-9P63128 1117 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 MYT1Q01538 1121 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 CC2D2BQ6DHV5 1058 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 HPS1Q92902 700 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 TRIM52Q96A61 297 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 ITPKCQ96DU7 683 aa7.93□□□□□ -1.14
USP40-204ENST00000427947 PPP1R15AO75807 674 aaPredicted RBP7.92□□□□□ -1.14
USP40-204ENST00000427947 ZIC2O95409 532 aaPredicted RBP7.92□□□□□ -1.14
USP40-204ENST00000427947 SRPK2P78362 688 aaKnown RBP7.92□□□□□ -1.14
USP40-204ENST00000427947 LILRA1O75019 489 aa7.91□□□□□ -1.14
USP40-204ENST00000427947 TIMP2P16035 220 aa7.91□□□□□ -1.14
USP40-204ENST00000427947 RASA1P20936 1047 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms