RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PNNQ9H307 717 aaKnown RBP13.48□□□□□ -0.25
CD44-207ENST00000425428 CPDO75976 1380 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 CRYBG1Q9Y4K1 1723 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 CDK12Q9NYV4 1490 aaPredicted RBP13.48□□□□□ -0.25
CD44-207ENST00000425428 NFAT5O94916 1531 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 ADAMTS2O95450 1211 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 CSB-PGBD3P0DP91 1061 aa13.48□□□□□ -0.25
CD44-207ENST00000425428 KIAA0232Q92628 1395 aa13.47□□□□□ -0.25
CD44-207ENST00000425428 BLMP54132 1417 aaPredicted RBP13.47□□□□□ -0.25
CD44-207ENST00000425428 FBLN1P23142 703 aa13.47□□□□□ -0.25
CD44-207ENST00000425428 HOXC9P31274 260 aa13.47□□□□□ -0.25
CD44-207ENST00000425428 ABCC6O95255 1503 aa13.46□□□□□ -0.25
CD44-207ENST00000425428 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.25
CD44-207ENST00000425428 INSRP06213 1382 aa13.45□□□□□ -0.26
CD44-207ENST00000425428 COL14A1Q05707 1796 aaKnown RBP13.45□□□□□ -0.26
CD44-207ENST00000425428 MSH5O43196 834 aa13.45□□□□□ -0.26
CD44-207ENST00000425428 LTV1Q96GA3 475 aaPredicted RBP13.45□□□□□ -0.26
CD44-207ENST00000425428 NGLY1Q96IV0 654 aa13.45□□□□□ -0.26
CD44-207ENST00000425428 CHRNA2Q15822 529 aa13.44□□□□□ -0.26
CD44-207ENST00000425428 U2AF1L5P0DN76 240 aaPredicted RBP13.43□□□□□ -0.26
CD44-207ENST00000425428 U2AF1Q01081 240 aaKnown RBP eCLIP13.43□□□□□ -0.26
CD44-207ENST00000425428 HSP90AB2PQ58FF8 381 aa13.43□□□□□ -0.26
CD44-207ENST00000425428 FAM9BQ8IZU0 186 aa13.43□□□□□ -0.26
CD44-207ENST00000425428 RGPD5Q99666 1765 aa13.43□□□□□ -0.26
CD44-207ENST00000425428 ANKRD24Q8TF21 1146 aa13.43□□□□□ -0.26
CD44-207ENST00000425428 C8orf37Q96NL8 207 aa13.43□□□□□ -0.26
CD44-207ENST00000425428 BTG4Q9NY30 223 aa13.42□□□□□ -0.26
CD44-207ENST00000425428 FAM208AQ9UK61 1670 aaKnown RBP13.42□□□□□ -0.26
CD44-207ENST00000425428 FAM83GA6ND36 823 aa13.41□□□□□ -0.26
CD44-207ENST00000425428 STRN4Q9NRL3 753 aa13.41□□□□□ -0.26
CD44-207ENST00000425428 PEAK1Q9H792 1746 aa13.41□□□□□ -0.26
CD44-207ENST00000425428 EIF4A2Q14240 407 aaKnown RBP13.4□□□□□ -0.26
CD44-207ENST00000425428 TOM1L2Q6ZVM7 507 aa13.4□□□□□ -0.26
CD44-207ENST00000425428 NLRP2Q9NX02 1062 aa13.4□□□□□ -0.26
CD44-207ENST00000425428 CCDC9Q9Y3X0 531 aaKnown RBP13.4□□□□□ -0.26
CD44-207ENST00000425428 NWD2Q9ULI1 1742 aa13.4□□□□□ -0.27
CD44-207ENST00000425428 IL13P35225 146 aa13.39□□□□□ -0.27
CD44-207ENST00000425428 MAPK8IP3Q9UPT6 1336 aa13.39□□□□□ -0.27
CD44-207ENST00000425428 PLCH1Q4KWH8 1693 aa13.39□□□□□ -0.27
CD44-207ENST00000425428 COL18A1P39060 1754 aa13.38□□□□□ -0.27
CD44-207ENST00000425428 PNISRQ8TF01 805 aaKnown RBP13.38□□□□□ -0.27
CD44-207ENST00000425428 ERBB3P21860 1342 aa13.38□□□□□ -0.27
CD44-207ENST00000425428 FCHSD2O94868 740 aa13.37□□□□□ -0.27
CD44-207ENST00000425428 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
CD44-207ENST00000425428 WDR17Q8IZU2 1322 aa13.37□□□□□ -0.27
CD44-207ENST00000425428 RAPGEF4Q8WZA2 1011 aa13.37□□□□□ -0.27
CD44-207ENST00000425428 USP21Q9UK80 565 aa13.37□□□□□ -0.27
CD44-207ENST00000425428 LMO7Q8WWI1 1683 aa13.36□□□□□ -0.27
CD44-207ENST00000425428 CCDC184Q52MB2 194 aa13.36□□□□□ -0.27
CD44-207ENST00000425428 SULT6B1Q6IMI4 303 aa13.36□□□□□ -0.27
CD44-207ENST00000425428 UNC5CLQ8IV45 518 aa13.36□□□□□ -0.27
CD44-207ENST00000425428 COL3A1P02461 1466 aaPredicted RBP13.36□□□□□ -0.27
CD44-207ENST00000425428 COL5A2P05997 1499 aaPredicted RBP13.36□□□□□ -0.27
CD44-207ENST00000425428 EYA1Q99502 592 aa13.35□□□□□ -0.27
CD44-207ENST00000425428 ADAMTS8Q9UP79 889 aa13.35□□□□□ -0.27
CD44-207ENST00000425428 CAMTA1Q9Y6Y1 1673 aa13.35□□□□□ -0.27
CD44-207ENST00000425428 HMOX1P09601 288 aa13.35□□□□□ -0.27
CD44-207ENST00000425428 ZNF772Q68DY9 489 aaPredicted RBP13.35□□□□□ -0.27
CD44-207ENST00000425428 CARD10Q9BWT7 1032 aa13.35□□□□□ -0.27
CD44-207ENST00000425428 CRB1P82279 1406 aa13.34□□□□□ -0.27
CD44-207ENST00000425428 TATP17735 454 aaPredicted RBP13.34□□□□□ -0.27
CD44-207ENST00000425428 FNBP4Q8N3X1 1017 aaPredicted RBP13.34□□□□□ -0.27
CD44-207ENST00000425428 RUNDC1Q96C34 613 aa13.34□□□□□ -0.27
CD44-207ENST00000425428 AFF2P51816 1311 aa13.33□□□□□ -0.27
CD44-207ENST00000425428 IGSF1Q8N6C5 1336 aa13.33□□□□□ -0.27
CD44-207ENST00000425428 RGPD2P0DJD1 1756 aa13.33□□□□□ -0.28
CD44-207ENST00000425428 CDCA7Q9BWT1 371 aaPredicted RBP13.33□□□□□ -0.28
CD44-207ENST00000425428 USP35Q9P2H5 1018 aa13.33□□□□□ -0.28
CD44-207ENST00000425428 THRAP3Q9Y2W1 955 aaKnown RBP13.33□□□□□ -0.28
CD44-207ENST00000425428 LRP6O75581 1613 aa13.33□□□□□ -0.28
CD44-207ENST00000425428 NBPF6Q5VWK0 638 aa13.32□□□□□ -0.28
CD44-207ENST00000425428 LARP1Q6PKG0 1096 aaKnown RBP13.32□□□□□ -0.28
CD44-207ENST00000425428 NBPF4Q96M43 638 aa13.32□□□□□ -0.28
CD44-207ENST00000425428 TRPC5Q9UL62 973 aaPredicted RBP13.32□□□□□ -0.28
CD44-207ENST00000425428 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.32□□□□□ -0.28
CD44-207ENST00000425428 SLIT2O94813 1529 aa13.32□□□□□ -0.28
CD44-207ENST00000425428 PRKAR2BP31323 418 aa13.32□□□□□ -0.28
CD44-207ENST00000425428 AMOTQ4VCS5 1084 aa13.32□□□□□ -0.28
CD44-207ENST00000425428 PLEKHO1Q53GL0 409 aaPredicted RBP13.32□□□□□ -0.28
CD44-207ENST00000425428 VPS72Q15906 364 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 TCP11L2Q8N4U5 519 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 NGEFQ8N5V2 710 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 USHBP1Q8N6Y0 703 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 SPG7Q9UQ90 795 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 RGPD1P0DJD0 1748 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 NRAPQ86VF7 1730 aa13.31□□□□□ -0.28
CD44-207ENST00000425428 A0A0G2JS52 829 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 IL2RBP14784 551 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 MYT1Q01538 1121 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 GAS2L2Q8NHY3 880 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 LMOD3Q0VAK6 560 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 CCDC146Q8IYE0 955 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 RSPH6AQ9H0K4 717 aa13.3□□□□□ -0.28
CD44-207ENST00000425428 PARP4Q9UKK3 1724 aaKnown RBP13.29□□□□□ -0.28
CD44-207ENST00000425428 C1orf141Q5JVX7 400 aa13.29□□□□□ -0.28
CD44-207ENST00000425428 KDRP35968 1356 aa13.29□□□□□ -0.28
CD44-207ENST00000425428 PLEKHG2Q9H7P9 1386 aa13.29□□□□□ -0.28
CD44-207ENST00000425428 HNRNPUQ00839 825 aaKnown RBP eCLIP13.28□□□□□ -0.28
CD44-207ENST00000425428 ILDR1Q86SU0 546 aaPredicted RBP13.28□□□□□ -0.28
CD44-207ENST00000425428 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms