RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 SCARF1Q14162 830 aa6.3□□□□□ -1.4
SF3B1-205ENST00000424674 ITPKCQ96DU7 683 aa6.3□□□□□ -1.4
SF3B1-205ENST00000424674 PCMTD1Q96MG8 357 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-205ENST00000424674 ZFP42Q96MM3 310 aa6.3□□□□□ -1.4
SF3B1-205ENST00000424674 ZFAND3Q9H8U3 227 aa6.3□□□□□ -1.4
SF3B1-205ENST00000424674 PNMA1Q8ND90 353 aa6.29□□□□□ -1.4
SF3B1-205ENST00000424674 SLC10A4Q96EP9 437 aa6.29□□□□□ -1.4
SF3B1-205ENST00000424674 PURBQ96QR8 312 aaKnown RBP6.29□□□□□ -1.4
SF3B1-205ENST00000424674 TERTO14746 1132 aaKnown RBP6.28□□□□□ -1.4
SF3B1-205ENST00000424674 HMX1Q9NP08 348 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-205ENST00000424674 ZBTB33Q86T24 672 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 CCDC116Q8IYX3 515 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 MEIOBQ8N635 442 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 EPS8L1Q8TE68 723 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 CDV3Q9UKY7 258 aaKnown RBP6.27□□□□□ -1.41
SF3B1-205ENST00000424674 GPSM3Q9Y4H4 160 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 EMILIN1Q9Y6C2 1016 aa6.27□□□□□ -1.41
SF3B1-205ENST00000424674 PTK2Q05397 1052 aa6.26□□□□□ -1.41
SF3B1-205ENST00000424674 NXF1Q9UBU9 619 aaKnown RBP6.26□□□□□ -1.41
SF3B1-205ENST00000424674 UPP2O95045 317 aa6.25□□□□□ -1.41
SF3B1-205ENST00000424674 TMEM259Q4ZIN3 620 aa6.25□□□□□ -1.41
SF3B1-205ENST00000424674 C6orf118Q5T5N4 469 aa6.25□□□□□ -1.41
SF3B1-205ENST00000424674 LINC00528Q8N1L1 170 aa6.25□□□□□ -1.41
SF3B1-205ENST00000424674 KCTD15Q96SI1 283 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-205ENST00000424674 OCSTAMPQ9BR26 566 aa6.25□□□□□ -1.41
SF3B1-205ENST00000424674 BMP2P12643 396 aa6.24□□□□□ -1.41
SF3B1-205ENST00000424674 NPAS3Q8IXF0 933 aa6.24□□□□□ -1.41
SF3B1-205ENST00000424674 ADAM32Q8TC27 787 aa6.24□□□□□ -1.41
SF3B1-205ENST00000424674 SLC16A10Q8TF71 515 aa6.24□□□□□ -1.41
SF3B1-205ENST00000424674 PGPEP1Q9NXJ5 209 aa6.24□□□□□ -1.41
SF3B1-205ENST00000424674 SUPT5HO00267 1087 aaKnown RBP6.23□□□□□ -1.41
SF3B1-205ENST00000424674 WIPF1O43516 503 aa6.23□□□□□ -1.41
SF3B1-205ENST00000424674 NBPF20Q3BBV1 942 aa6.23□□□□□ -1.41
SF3B1-205ENST00000424674 INTS6LQ5JSJ4 861 aaKnown RBP6.23□□□□□ -1.41
SF3B1-205ENST00000424674 PPP1R26Q5T8A7 1209 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-205ENST00000424674 LCE2CQ5TA81 110 aa6.23□□□□□ -1.41
SF3B1-205ENST00000424674 SOBPA7XYQ1 873 aa6.22□□□□□ -1.41
SF3B1-205ENST00000424674 DHX9Q08211 1270 aaKnown RBP6.22□□□□□ -1.41
SF3B1-205ENST00000424674 TSEN34Q9BSV6 310 aaKnown RBP6.22□□□□□ -1.41
SF3B1-205ENST00000424674 TRIM34Q9BYJ4 488 aa6.22□□□□□ -1.41
SF3B1-205ENST00000424674 H3BM21 787 aa6.21□□□□□ -1.42
SF3B1-205ENST00000424674 MAN1A2O60476 641 aa6.21□□□□□ -1.42
SF3B1-205ENST00000424674 DZIP3Q86Y13 1208 aaKnown RBP6.21□□□□□ -1.42
SF3B1-205ENST00000424674 VEGFBP49765 207 aa6.2□□□□□ -1.42
SF3B1-205ENST00000424674 INSM1Q01101 510 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-205ENST00000424674 CBLBQ13191 982 aa6.2□□□□□ -1.42
SF3B1-205ENST00000424674 Q6ZVU0 165 aa6.2□□□□□ -1.42
SF3B1-205ENST00000424674 IRF7Q92985 503 aa6.2□□□□□ -1.42
SF3B1-205ENST00000424674 GJD4Q96KN9 370 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-205ENST00000424674 TRIM26Q12899 539 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-205ENST00000424674 SOS2Q07890 1332 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-205ENST00000424674 ZBBXA8MT70 800 aa6.18□□□□□ -1.42
SF3B1-205ENST00000424674 SOCS7O14512 581 aa6.18□□□□□ -1.42
SF3B1-205ENST00000424674 RAB15P59190 212 aa6.18□□□□□ -1.42
SF3B1-205ENST00000424674 BANK1Q8NDB2 785 aa6.18□□□□□ -1.42
SF3B1-205ENST00000424674 DNMT3LQ9UJW3 386 aa6.18□□□□□ -1.42
SF3B1-205ENST00000424674 ESPNB1AK53 854 aa6.17□□□□□ -1.42
SF3B1-205ENST00000424674 SPINT1O43278 529 aa6.17□□□□□ -1.42
SF3B1-205ENST00000424674 TTLL8A6PVC2 850 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 FBXO45P0C2W1 286 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 GMPRP36959 345 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.16□□□□□ -1.429e-7■■■■■ 34.1
SF3B1-205ENST00000424674 SEPT12Q8IYM1 358 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 ZNF784Q8NCA9 323 aaPredicted RBP6.16□□□□□ -1.42
SF3B1-205ENST00000424674 TMPRSS4Q9NRS4 437 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 PCDHB9Q9Y5E1 797 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 ERBB4Q15303 1308 aa6.16□□□□□ -1.42
SF3B1-205ENST00000424674 ERVH48-1M5A8F1 160 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 APBB1O00213 710 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 VSIG8P0DPA2 414 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 UBTFP17480 764 aaKnown RBP6.15□□□□□ -1.42
SF3B1-205ENST00000424674 RELBQ01201 579 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 MTMR14Q8NCE2 650 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 AGBL1Q96MI9 1066 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 STK17AQ9UEE5 414 aa6.15□□□□□ -1.42
SF3B1-205ENST00000424674 ADH1AP07327 375 aa6.14□□□□□ -1.43
SF3B1-205ENST00000424674 NDUFB9Q9Y6M9 179 aa6.14□□□□□ -1.43
SF3B1-205ENST00000424674 FIGNL2A6NMB9 653 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 GPR37L1O60883 481 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 LILRA1O75019 489 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 PPFIA3O75145 1194 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 NR1H3Q13133 447 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 ZNF592Q92610 1267 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 TRIM52Q96A61 297 aa6.13□□□□□ -1.43
SF3B1-205ENST00000424674 INSM2Q96T92 566 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-205ENST00000424674 POLMQ9NP87 494 aaPredicted RBP6.13□□□□□ -1.43
SF3B1-205ENST00000424674 GIGYF1O75420 1035 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-205ENST00000424674 CTSOP43234 321 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-205ENST00000424674 PTSQ03393 145 aa6.12□□□□□ -1.43
SF3B1-205ENST00000424674 CYLDQ9NQC7 956 aa6.12□□□□□ -1.43
SF3B1-205ENST00000424674 SNRKQ9NRH2 765 aa6.12□□□□□ -1.43
SF3B1-205ENST00000424674 ZNF330Q9Y3S2 320 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-205ENST00000424674 MCCD1P59942 119 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-205ENST00000424674 CCDC125Q86Z20 511 aa6.11□□□□□ -1.43
SF3B1-205ENST00000424674 RNF217Q8TC41 542 aa6.11□□□□□ -1.43
SF3B1-205ENST00000424674 ZNF395Q9H8N7 513 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-205ENST00000424674 ADD1P35611 737 aaKnown RBP6.1□□□□□ -1.43
SF3B1-205ENST00000424674 PTGIRP43119 386 aa6.1□□□□□ -1.43
SF3B1-205ENST00000424674 RNF20Q5VTR2 975 aa6.1□□□□□ -1.43
SF3B1-205ENST00000424674 ZSCAN1Q8NBB4 408 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms