RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GCP02774 474 aa22.73■■□□□ 1.23
CCDC28B-202ENST00000421922 PHLPP1O60346 1717 aa22.72■■□□□ 1.23
CCDC28B-202ENST00000421922 HAP1P54257 671 aaPredicted RBP22.72■■□□□ 1.23
CCDC28B-202ENST00000421922 PNNQ9H307 717 aaKnown RBP22.71■■□□□ 1.23
CCDC28B-202ENST00000421922 CRYBG1Q9Y4K1 1723 aa22.7■■□□□ 1.22
CCDC28B-202ENST00000421922 ZBED9Q6R2W3 1325 aa22.69■■□□□ 1.22
CCDC28B-202ENST00000421922 NEFMP07197 916 aa22.68■■□□□ 1.22
CCDC28B-202ENST00000421922 HOXC9P31274 260 aa22.68■■□□□ 1.22
CCDC28B-202ENST00000421922 CCDC146Q8IYE0 955 aa22.68■■□□□ 1.22
CCDC28B-202ENST00000421922 LRRC59Q96AG4 307 aaKnown RBP22.68■■□□□ 1.22
CCDC28B-202ENST00000421922 HSP90AB2PQ58FF8 381 aa22.67■■□□□ 1.22
CCDC28B-202ENST00000421922 IL13P35225 146 aa22.66■■□□□ 1.22
CCDC28B-202ENST00000421922 EIF4A2Q14240 407 aaKnown RBP22.66■■□□□ 1.22
CCDC28B-202ENST00000421922 ABCA3Q99758 1704 aa22.66■■□□□ 1.22
CCDC28B-202ENST00000421922 MAPK8IP3Q9UPT6 1336 aa22.66■■□□□ 1.22
CCDC28B-202ENST00000421922 RUNDC1Q96C34 613 aa22.65■■□□□ 1.22
CCDC28B-202ENST00000421922 ZC3H6P61129 1189 aaKnown RBP22.65■■□□□ 1.22
CCDC28B-202ENST00000421922 CABLES1Q8TDN4 633 aa22.65■■□□□ 1.22
CCDC28B-202ENST00000421922 IP6K1Q92551 441 aa22.65■■□□□ 1.22
CCDC28B-202ENST00000421922 POTEAQ6S8J7 498 aa22.64■■□□□ 1.21
CCDC28B-202ENST00000421922 ARHGEF25Q86VW2 580 aa22.64■■□□□ 1.21
CCDC28B-202ENST00000421922 ABCC6O95255 1503 aa22.62■■□□□ 1.21
CCDC28B-202ENST00000421922 COL16A1Q07092 1604 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-202ENST00000421922 LTV1Q96GA3 475 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-202ENST00000421922 SENP3-EIF4A1A0A087X0R7 540 aa22.61■■□□□ 1.21
CCDC28B-202ENST00000421922 FCHSD2O94868 740 aa22.61■■□□□ 1.21
CCDC28B-202ENST00000421922 SALL2Q9Y467 1007 aaPredicted RBP22.61■■□□□ 1.21
CCDC28B-202ENST00000421922 RGPD1P0DJD0 1748 aa22.6■■□□□ 1.21
CCDC28B-202ENST00000421922 HMOX1P09601 288 aa22.6■■□□□ 1.21
CCDC28B-202ENST00000421922 COL22A1Q8NFW1 1626 aaPredicted RBP22.6■■□□□ 1.21
CCDC28B-202ENST00000421922 APAF1O14727 1248 aa22.59■■□□□ 1.21
CCDC28B-202ENST00000421922 NGEFQ8N5V2 710 aa22.59■■□□□ 1.21
CCDC28B-202ENST00000421922 CPDO75976 1380 aa22.58■■□□□ 1.21
CCDC28B-202ENST00000421922 RGPD5Q99666 1765 aa22.58■■□□□ 1.2
CCDC28B-202ENST00000421922 KIAA0232Q92628 1395 aa22.58■■□□□ 1.2
CCDC28B-202ENST00000421922 PRKAR2BP31323 418 aa22.57■■□□□ 1.2
CCDC28B-202ENST00000421922 PRDM11Q9NQV5 511 aa22.57■■□□□ 1.2
CCDC28B-202ENST00000421922 SULT6B1Q6IMI4 303 aa22.57■■□□□ 1.2
CCDC28B-202ENST00000421922 RSPH6AQ9H0K4 717 aa22.57■■□□□ 1.2
CCDC28B-202ENST00000421922 TCP11L2Q8N4U5 519 aa22.56■■□□□ 1.2
CCDC28B-202ENST00000421922 FAM208AQ9UK61 1670 aaKnown RBP22.55■■□□□ 1.2
CCDC28B-202ENST00000421922 ANKRD24Q8TF21 1146 aa22.54■■□□□ 1.2
CCDC28B-202ENST00000421922 COL18A1P39060 1754 aa22.53■■□□□ 1.2
CCDC28B-202ENST00000421922 IGSF1Q8N6C5 1336 aa22.53■■□□□ 1.2
CCDC28B-202ENST00000421922 CHRNA2Q15822 529 aa22.53■■□□□ 1.2
CCDC28B-202ENST00000421922 PLEKHF1Q96S99 279 aa22.53■■□□□ 1.2
CCDC28B-202ENST00000421922 EYA1Q99502 592 aa22.53■■□□□ 1.2
CCDC28B-202ENST00000421922 NEUROD2Q15784 382 aa22.52■■□□□ 1.2
CCDC28B-202ENST00000421922 RGPD2P0DJD1 1756 aa22.51■■□□□ 1.19
CCDC28B-202ENST00000421922 CSB-PGBD3P0DP91 1061 aa22.51■■□□□ 1.19
CCDC28B-202ENST00000421922 PDE3BQ13370 1112 aa22.51■■□□□ 1.19
CCDC28B-202ENST00000421922 AEBP1Q8IUX7 1158 aa22.5■■□□□ 1.19
CCDC28B-202ENST00000421922 RRP7AQ9Y3A4 280 aaKnown RBP22.5■■□□□ 1.19
CCDC28B-202ENST00000421922 ERBB3P21860 1342 aa22.49■■□□□ 1.19
CCDC28B-202ENST00000421922 AXIN2Q9Y2T1 843 aa22.48■■□□□ 1.19
CCDC28B-202ENST00000421922 KDRP35968 1356 aa22.48■■□□□ 1.19
CCDC28B-202ENST00000421922 COL14A1Q05707 1796 aaKnown RBP22.48■■□□□ 1.19
CCDC28B-202ENST00000421922 TMPOP42166 694 aaKnown RBP22.48■■□□□ 1.19
CCDC28B-202ENST00000421922 LMO7Q8WWI1 1683 aa22.47■■□□□ 1.19
CCDC28B-202ENST00000421922 CAMTA1Q9Y6Y1 1673 aa22.47■■□□□ 1.19
CCDC28B-202ENST00000421922 JCADQ9P266 1359 aa22.47■■□□□ 1.19
CCDC28B-202ENST00000421922 NCBP3Q53F19 620 aaKnown RBP22.47■■□□□ 1.19
CCDC28B-202ENST00000421922 NFE2L2Q16236 605 aa22.46■■□□□ 1.19
CCDC28B-202ENST00000421922 USHBP1Q8N6Y0 703 aa22.46■■□□□ 1.19
CCDC28B-202ENST00000421922 RIPK4P57078 832 aa22.45■■□□□ 1.18
CCDC28B-202ENST00000421922 LMOD3Q0VAK6 560 aa22.45■■□□□ 1.18
CCDC28B-202ENST00000421922 NBPF6Q5VWK0 638 aa22.45■■□□□ 1.18
CCDC28B-202ENST00000421922 NBPF4Q96M43 638 aa22.45■■□□□ 1.18
CCDC28B-202ENST00000421922 NLRP2Q9NX02 1062 aa22.45■■□□□ 1.18
CCDC28B-202ENST00000421922 GOLGA2Q08379 1002 aa22.44■■□□□ 1.18
CCDC28B-202ENST00000421922 CCDC27Q2M243 656 aa22.44■■□□□ 1.18
CCDC28B-202ENST00000421922 DLG5Q8TDM6 1919 aa22.44■■□□□ 1.18
CCDC28B-202ENST00000421922 NUTM2BA6NNL0 878 aaPredicted RBP22.43■■□□□ 1.18
CCDC28B-202ENST00000421922 NUTM2EB1AL46 878 aaPredicted RBP22.43■■□□□ 1.18
CCDC28B-202ENST00000421922 NUTM2AQ8IVF1 878 aaPredicted RBP22.43■■□□□ 1.18
CCDC28B-202ENST00000421922 PHACTR3Q96KR7 559 aa22.43■■□□□ 1.18
CCDC28B-202ENST00000421922 EVA1CP58658 441 aa22.42■■□□□ 1.18
CCDC28B-202ENST00000421922 WWC1Q8IX03 1113 aa22.42■■□□□ 1.18
CCDC28B-202ENST00000421922 COL5A2P05997 1499 aaPredicted RBP22.41■■□□□ 1.18
CCDC28B-202ENST00000421922 GAS2L2Q8NHY3 880 aa22.41■■□□□ 1.18
CCDC28B-202ENST00000421922 WDR17Q8IZU2 1322 aa22.4■■□□□ 1.18
CCDC28B-202ENST00000421922 ZNF521Q96K83 1311 aa22.4■■□□□ 1.18
CCDC28B-202ENST00000421922 NCAPD2Q15021 1401 aa22.4■■□□□ 1.18
CCDC28B-202ENST00000421922 ADAMTS2O95450 1211 aa22.4■■□□□ 1.18
CCDC28B-202ENST00000421922 TOM1L2Q6ZVM7 507 aa22.4■■□□□ 1.18
CCDC28B-202ENST00000421922 PLCH1Q4KWH8 1693 aa22.39■■□□□ 1.18
CCDC28B-202ENST00000421922 FAM83GA6ND36 823 aa22.39■■□□□ 1.17
CCDC28B-202ENST00000421922 WDR63Q8IWG1 891 aa22.39■■□□□ 1.17
CCDC28B-202ENST00000421922 STRN4Q9NRL3 753 aa22.39■■□□□ 1.17
CCDC28B-202ENST00000421922 E9PSI1 815 aa22.38■■□□□ 1.17
CCDC28B-202ENST00000421922 CALD1Q05682 793 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-202ENST00000421922 RAPGEF4Q8WZA2 1011 aa22.38■■□□□ 1.17
CCDC28B-202ENST00000421922 BTG4Q9NY30 223 aa22.37■■□□□ 1.17
CCDC28B-202ENST00000421922 CDCA7LQ96GN5 454 aa22.36■■□□□ 1.17
CCDC28B-202ENST00000421922 SPATA31A6Q5VVP1 1343 aa22.35■■□□□ 1.17
CCDC28B-202ENST00000421922 TATP17735 454 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-202ENST00000421922 PLEKHO1Q53GL0 409 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-202ENST00000421922 RTF1Q92541 710 aaKnown RBP22.35■■□□□ 1.17
CCDC28B-202ENST00000421922 MTHFSDQ2M296 383 aaKnown RBP22.34■■□□□ 1.17
CCDC28B-202ENST00000421922 AMOTQ4VCS5 1084 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms