RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 DZIP3Q86Y13 1208 aaKnown RBP7.59□□□□□ -1.19
HMGB3P20-201ENST00000417997 CCDC116Q8IYX3 515 aa7.59□□□□□ -1.19
HMGB3P20-201ENST00000417997 PURBQ96QR8 312 aaKnown RBP7.59□□□□□ -1.19
HMGB3P20-201ENST00000417997 KCTD15Q96SI1 283 aaPredicted RBP7.59□□□□□ -1.19
HMGB3P20-201ENST00000417997 C6orf118Q5T5N4 469 aa7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 ZFP42Q96MM3 310 aa7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 OCSTAMPQ9BR26 566 aa7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 KLF16Q9BXK1 252 aaPredicted RBP7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 CDV3Q9UKY7 258 aaKnown RBP7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 EMILIN1Q9Y6C2 1016 aa7.58□□□□□ -1.2
HMGB3P20-201ENST00000417997 UPP2O95045 317 aa7.57□□□□□ -1.2
HMGB3P20-201ENST00000417997 BANK1Q8NDB2 785 aa7.57□□□□□ -1.2
HMGB3P20-201ENST00000417997 GJD4Q96KN9 370 aaPredicted RBP7.57□□□□□ -1.2
HMGB3P20-201ENST00000417997 SNRKQ9NRH2 765 aa7.57□□□□□ -1.2
HMGB3P20-201ENST00000417997 NBPF20Q3BBV1 942 aa7.56□□□□□ -1.2
HMGB3P20-201ENST00000417997 PPP1R26Q5T8A7 1209 aaPredicted RBP7.56□□□□□ -1.2
HMGB3P20-201ENST00000417997 PGPEP1Q9NXJ5 209 aa7.56□□□□□ -1.2
HMGB3P20-201ENST00000417997 PCDHB9Q9Y5E1 797 aa7.56□□□□□ -1.2
HMGB3P20-201ENST00000417997 APBB1O00213 710 aa7.55□□□□□ -1.2
HMGB3P20-201ENST00000417997 BMP2P12643 396 aa7.55□□□□□ -1.2
HMGB3P20-201ENST00000417997 MTMR14Q8NCE2 650 aa7.55□□□□□ -1.2
HMGB3P20-201ENST00000417997 ZBBXA8MT70 800 aa7.54□□□□□ -1.2
HMGB3P20-201ENST00000417997 DHX9Q08211 1270 aaKnown RBP7.54□□□□□ -1.2
HMGB3P20-201ENST00000417997 INTS6LQ5JSJ4 861 aaKnown RBP7.54□□□□□ -1.2
HMGB3P20-201ENST00000417997 NDUFB9Q9Y6M9 179 aa7.54□□□□□ -1.2
HMGB3P20-201ENST00000417997 FBXO45P0C2W1 286 aa7.53□□□□□ -1.2
HMGB3P20-201ENST00000417997 LINC00528Q8N1L1 170 aa7.53□□□□□ -1.2
HMGB3P20-201ENST00000417997 MEIOBQ8N635 442 aa7.53□□□□□ -1.2
HMGB3P20-201ENST00000417997 SOBPA7XYQ1 873 aa7.52□□□□□ -1.21
HMGB3P20-201ENST00000417997 CBLBQ13191 982 aa7.52□□□□□ -1.21
HMGB3P20-201ENST00000417997 MAN1A2O60476 641 aa7.51□□□□□ -1.21
HMGB3P20-201ENST00000417997 WFS1O76024 890 aa7.51□□□□□ -1.21
HMGB3P20-201ENST00000417997 TREML4Q6UXN2 200 aa7.51□□□□□ -1.21
HMGB3P20-201ENST00000417997 TSEN34Q9BSV6 310 aaKnown RBP7.51□□□□□ -1.21
HMGB3P20-201ENST00000417997 TMPRSS4Q9NRS4 437 aa7.51□□□□□ -1.21
HMGB3P20-201ENST00000417997 NR1H3Q13133 447 aa7.5□□□□□ -1.21
HMGB3P20-201ENST00000417997 PRM3Q9NNZ6 103 aa7.5□□□□□ -1.21
HMGB3P20-201ENST00000417997 TERTO14746 1132 aaKnown RBP7.49□□□□□ -1.21
HMGB3P20-201ENST00000417997 RELBQ01201 579 aa7.49□□□□□ -1.21
HMGB3P20-201ENST00000417997 AGBL1Q96MI9 1066 aa7.49□□□□□ -1.21
HMGB3P20-201ENST00000417997 ZNF330Q9Y3S2 320 aaPredicted RBP7.49□□□□□ -1.21
HMGB3P20-201ENST00000417997 ERVH48-1M5A8F1 160 aa7.48□□□□□ -1.21
HMGB3P20-201ENST00000417997 GIGYF1O75420 1035 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P20-201ENST00000417997 VEGFBP49765 207 aa7.48□□□□□ -1.21
HMGB3P20-201ENST00000417997 ZNF784Q8NCA9 323 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P20-201ENST00000417997 TBC1D2BQ9UPU7 963 aa7.48□□□□□ -1.21
HMGB3P20-201ENST00000417997 SOCS7O14512 581 aa7.47□□□□□ -1.21
HMGB3P20-201ENST00000417997 NFX1Q12986 1120 aaKnown RBP7.47□□□□□ -1.21
HMGB3P20-201ENST00000417997 SLC16A10Q8TF71 515 aa7.47□□□□□ -1.21
HMGB3P20-201ENST00000417997 CYLDQ9NQC7 956 aa7.47□□□□□ -1.21
HMGB3P20-201ENST00000417997 NXF1Q9UBU9 619 aaKnown RBP7.47□□□□□ -1.21
HMGB3P20-201ENST00000417997 FIGNL2A6NMB9 653 aa7.46□□□□□ -1.22
HMGB3P20-201ENST00000417997 ESPNB1AK53 854 aa7.46□□□□□ -1.22
HMGB3P20-201ENST00000417997 GPR37L1O60883 481 aa7.46□□□□□ -1.22
HMGB3P20-201ENST00000417997 Q6ZVU0 165 aa7.46□□□□□ -1.22
HMGB3P20-201ENST00000417997 TTLL8A6PVC2 850 aa7.45□□□□□ -1.22
HMGB3P20-201ENST00000417997 SEPT12Q8IYM1 358 aa7.45□□□□□ -1.22
HMGB3P20-201ENST00000417997 ZNF592Q92610 1267 aa7.45□□□□□ -1.22
HMGB3P20-201ENST00000417997 ZNF395Q9H8N7 513 aaPredicted RBP7.45□□□□□ -1.22
HMGB3P20-201ENST00000417997 ABL2P42684 1182 aa7.44□□□□□ -1.22
HMGB3P20-201ENST00000417997 GDPD2Q9HCC8 539 aa7.44□□□□□ -1.22
HMGB3P20-201ENST00000417997 POLMQ9NP87 494 aaPredicted RBP7.44□□□□□ -1.22
HMGB3P20-201ENST00000417997 DNMT3LQ9UJW3 386 aa7.44□□□□□ -1.22
HMGB3P20-201ENST00000417997 SOS2Q07890 1332 aaPredicted RBP7.44□□□□□ -1.22
HMGB3P20-201ENST00000417997 SPINT1O43278 529 aa7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 ADH1AP07327 375 aa7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 MCCD1P59942 119 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 RNF20Q5VTR2 975 aa7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 TRIM52Q96A61 297 aa7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 INSM2Q96T92 566 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 ESF1Q9H501 851 aaKnown RBP7.43□□□□□ -1.22
HMGB3P20-201ENST00000417997 LILRA1O75019 489 aa7.42□□□□□ -1.22
HMGB3P20-201ENST00000417997 ADD1P35611 737 aaKnown RBP7.42□□□□□ -1.22
HMGB3P20-201ENST00000417997 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.42□□□□□ -1.22
HMGB3P20-201ENST00000417997 PCDHB11Q9Y5F2 797 aa7.42□□□□□ -1.22
HMGB3P20-201ENST00000417997 CCDC180Q9P1Z9 1646 aa7.41□□□□□ -1.22
HMGB3P20-201ENST00000417997 H3BM21 787 aa7.41□□□□□ -1.22
HMGB3P20-201ENST00000417997 CTSOP43234 321 aaPredicted RBP7.41□□□□□ -1.22
HMGB3P20-201ENST00000417997 MCM6Q14566 821 aa7.41□□□□□ -1.22
HMGB3P20-201ENST00000417997 LCE2AQ5TA79 106 aaPredicted RBP7.41□□□□□ -1.22
HMGB3P20-201ENST00000417997 PTGIRP43119 386 aa7.4□□□□□ -1.22
HMGB3P20-201ENST00000417997 EIF4G2P78344 907 aaKnown RBP eCLIP7.4□□□□□ -1.22
HMGB3P20-201ENST00000417997 VAC14Q08AM6 782 aa7.4□□□□□ -1.22
HMGB3P20-201ENST00000417997 IRF5Q13568 498 aa7.4□□□□□ -1.22
HMGB3P20-201ENST00000417997 IRF7Q92985 503 aa7.4□□□□□ -1.22
HMGB3P20-201ENST00000417997 LCE2CQ5TA81 110 aa7.39□□□□□ -1.23
HMGB3P20-201ENST00000417997 CC2D2BQ6DHV5 1058 aa7.39□□□□□ -1.23
HMGB3P20-201ENST00000417997 NPAS3Q8IXF0 933 aa7.39□□□□□ -1.23
HMGB3P20-201ENST00000417997 ATP5J2-PTCD1G3V325 749 aa7.38□□□□□ -1.23
HMGB3P20-201ENST00000417997 MEN1O00255 615 aa7.38□□□□□ -1.23
HMGB3P20-201ENST00000417997 CCDC125Q86Z20 511 aa7.38□□□□□ -1.23
HMGB3P20-201ENST00000417997 CEP126Q9P2H0 1117 aa7.38□□□□□ -1.23
HMGB3P20-201ENST00000417997 ERBB4Q15303 1308 aa7.37□□□□□ -1.23
HMGB3P20-201ENST00000417997 PPFIA3O75145 1194 aa7.37□□□□□ -1.23
HMGB3P20-201ENST00000417997 GMPRP36959 345 aa7.37□□□□□ -1.23
HMGB3P20-201ENST00000417997 SCTRP47872 440 aa7.37□□□□□ -1.23
HMGB3P20-201ENST00000417997 PTSQ03393 145 aa7.37□□□□□ -1.23
HMGB3P20-201ENST00000417997 ERVK-9P63128 1117 aa7.36□□□□□ -1.23
HMGB3P20-201ENST00000417997 SLFNL1Q499Z3 407 aa7.36□□□□□ -1.23
HMGB3P20-201ENST00000417997 CYP2U1Q7Z449 544 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms