RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SLC12A5Q9H2X9 1139 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 WDR17Q8IZU2 1322 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 TTC21AQ8NDW8 1320 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 LRRC37A3O60309 1634 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 DDB1Q16531 1140 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 KCNH5Q8NCM2 988 aa16.45■□□□□ 0.22
USP4-204ENST00000416417 RGPD5Q99666 1765 aa16.44■□□□□ 0.22
USP4-204ENST00000416417 CD163L1Q9NR16 1453 aa16.44■□□□□ 0.22
USP4-204ENST00000416417 NFAT5O94916 1531 aa16.44■□□□□ 0.22
USP4-204ENST00000416417 MARCH10Q8NA82 808 aaPredicted RBP16.43■□□□□ 0.22
USP4-204ENST00000416417 OVOS2A0A0G2JMS6 1433 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 OVOS2A0A0J9YW53 1432 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 OVOS2Q6IE36 1432 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 RREB1Q92766 1687 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 MON2Q7Z3U7 1717 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 PEAK1Q9H792 1746 aa16.42■□□□□ 0.22
USP4-204ENST00000416417 NUP188Q5SRE5 1749 aa16.41■□□□□ 0.22
USP4-204ENST00000416417 SBNO2Q9Y2G9 1366 aa16.41■□□□□ 0.22
USP4-204ENST00000416417 PARD3Q8TEW0 1356 aa16.4■□□□□ 0.22
USP4-204ENST00000416417 CARD10Q9BWT7 1032 aa16.4■□□□□ 0.22
USP4-204ENST00000416417 HDGFL2Q7Z4V5 671 aaPredicted RBP16.4■□□□□ 0.22
USP4-204ENST00000416417 WNK3Q9BYP7 1800 aa16.39■□□□□ 0.21
USP4-204ENST00000416417 ST20-MTHFSA0A0A6YYL1 179 aa16.38■□□□□ 0.21
USP4-204ENST00000416417 NBPF14Q5TI25 921 aa16.38■□□□□ 0.21
USP4-204ENST00000416417 A0A1W2PP64 1363 aa16.37■□□□□ 0.21
USP4-204ENST00000416417 USP31Q70CQ4 1352 aa16.37■□□□□ 0.21
USP4-204ENST00000416417 NLRP2Q9NX02 1062 aa16.37■□□□□ 0.21
USP4-204ENST00000416417 TESK2Q96S53 571 aa16.36■□□□□ 0.21
USP4-204ENST00000416417 SBF2Q86WG5 1849 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 EXOC5O00471 708 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
USP4-204ENST00000416417 ANO8Q9HCE9 1232 aaPredicted RBP16.35■□□□□ 0.21
USP4-204ENST00000416417 EDC4Q6P2E9 1401 aaKnown RBP16.35■□□□□ 0.21
USP4-204ENST00000416417 KCNQ2O43526 872 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 FBLN1P23142 703 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 PROM2Q8N271 834 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 ANKRD24Q8TF21 1146 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 CDCA7Q9BWT1 371 aaPredicted RBP16.35■□□□□ 0.21
USP4-204ENST00000416417 TERF2IPQ9NYB0 399 aa16.35■□□□□ 0.21
USP4-204ENST00000416417 ERBB3P21860 1342 aa16.34■□□□□ 0.21
USP4-204ENST00000416417 C11orf95C9JLR9 678 aaPredicted RBP16.34■□□□□ 0.21
USP4-204ENST00000416417 ACSBG1Q96GR2 724 aa16.34■□□□□ 0.21
USP4-204ENST00000416417 PLSCR1O15162 318 aa16.33■□□□□ 0.2
USP4-204ENST00000416417 TRIM26Q12899 539 aaPredicted RBP16.33■□□□□ 0.2
USP4-204ENST00000416417 LTV1Q96GA3 475 aaPredicted RBP16.33■□□□□ 0.2
USP4-204ENST00000416417 PDGFDQ9GZP0 370 aaPredicted RBP16.33■□□□□ 0.2
USP4-204ENST00000416417 CCDC7Q96M83 1385 aa16.33■□□□□ 0.2
USP4-204ENST00000416417 USP54Q70EL1 1684 aa16.32■□□□□ 0.2
USP4-204ENST00000416417 LTN1O94822 1766 aa16.32■□□□□ 0.2
USP4-204ENST00000416417 ABCC6O95255 1503 aa16.31■□□□□ 0.2
USP4-204ENST00000416417 TNS2Q63HR2 1409 aa16.31■□□□□ 0.2
USP4-204ENST00000416417 IL2RBP14784 551 aa16.29■□□□□ 0.2
USP4-204ENST00000416417 TXNRD1Q16881 649 aa16.29■□□□□ 0.2
USP4-204ENST00000416417 PUS7Q96PZ0 661 aaKnown RBP16.29■□□□□ 0.2
USP4-204ENST00000416417 BCL9O00512 1426 aa16.29■□□□□ 0.2
USP4-204ENST00000416417 SPON1Q9HCB6 807 aa16.28■□□□□ 0.2
USP4-204ENST00000416417 PPP1R1BQ9UD71 204 aaPredicted RBP16.28■□□□□ 0.2
USP4-204ENST00000416417 IP6K1Q92551 441 aa16.27■□□□□ 0.2
USP4-204ENST00000416417 COG3Q96JB2 828 aa16.27■□□□□ 0.2
USP4-204ENST00000416417 RGPD3A6NKT7 1758 aaPredicted RBP16.26■□□□□ 0.19
USP4-204ENST00000416417 RGPD4Q7Z3J3 1758 aa16.26■□□□□ 0.19
USP4-204ENST00000416417 ZBTB7AO95365 584 aa16.26■□□□□ 0.19
USP4-204ENST00000416417 MAP3K19Q56UN5 1328 aa16.26■□□□□ 0.19
USP4-204ENST00000416417 USP47Q96K76 1375 aa16.26■□□□□ 0.19
USP4-204ENST00000416417 DDX54Q8TDD1 881 aaKnown RBP16.25■□□□□ 0.19
USP4-204ENST00000416417 GGNBP2Q9H3C7 697 aa16.25■□□□□ 0.19
USP4-204ENST00000416417 HOXC9P31274 260 aa16.24■□□□□ 0.19
USP4-204ENST00000416417 RRS1Q15050 365 aaKnown RBP16.24■□□□□ 0.19
USP4-204ENST00000416417 ATF5Q9Y2D1 282 aaPredicted RBP16.24■□□□□ 0.19
USP4-204ENST00000416417 AMPHP49418 695 aa16.24■□□□□ 0.19
USP4-204ENST00000416417 STK32BQ9NY57 414 aa16.24■□□□□ 0.19
USP4-204ENST00000416417 NINLQ9Y2I6 1382 aa16.23■□□□□ 0.19
USP4-204ENST00000416417 NHSQ6T4R5 1651 aa16.23■□□□□ 0.19
USP4-204ENST00000416417 TMF1P82094 1093 aa16.23■□□□□ 0.19
USP4-204ENST00000416417 CASZ1Q86V15 1759 aa16.23■□□□□ 0.19
USP4-204ENST00000416417 ANKRD36BQ8N2N9 1353 aa16.23■□□□□ 0.19
USP4-204ENST00000416417 SLC15A2Q16348 729 aa16.22■□□□□ 0.19
USP4-204ENST00000416417 FYB1O15117 783 aa16.21■□□□□ 0.19
USP4-204ENST00000416417 USHBP1Q8N6Y0 703 aa16.21■□□□□ 0.19
USP4-204ENST00000416417 RGPD2P0DJD1 1756 aa16.2■□□□□ 0.18
USP4-204ENST00000416417 KCNQ4P56696 695 aa16.19■□□□□ 0.18
USP4-204ENST00000416417 PCGF6Q9BYE7 350 aa16.19■□□□□ 0.18
USP4-204ENST00000416417 LRRC4BQ9NT99 713 aa16.19■□□□□ 0.18
USP4-204ENST00000416417 ZNF827Q17R98 1081 aa16.19■□□□□ 0.18
USP4-204ENST00000416417 SYTL4Q96C24 671 aaPredicted RBP16.19■□□□□ 0.18
USP4-204ENST00000416417 BTAF1O14981 1849 aa16.19■□□□□ 0.18
USP4-204ENST00000416417 PTGER2P43116 358 aa16.18■□□□□ 0.18
USP4-204ENST00000416417 NBPF6Q5VWK0 638 aa16.18■□□□□ 0.18
USP4-204ENST00000416417 NBPF4Q96M43 638 aa16.18■□□□□ 0.18
USP4-204ENST00000416417 MEGF6O75095 1541 aa16.18■□□□□ 0.18
USP4-204ENST00000416417 FAM208AQ9UK61 1670 aaKnown RBP16.17■□□□□ 0.18
USP4-204ENST00000416417 SLC24A1O60721 1099 aa16.17■□□□□ 0.18
USP4-204ENST00000416417 PRIM1P49642 420 aaKnown RBP16.17■□□□□ 0.18
USP4-204ENST00000416417 MYOM1P52179 1685 aa16.16■□□□□ 0.18
USP4-204ENST00000416417 CARD14Q9BXL6 1004 aa16.16■□□□□ 0.18
USP4-204ENST00000416417 HSP90AB2PQ58FF8 381 aa16.15■□□□□ 0.18
USP4-204ENST00000416417 ZCRB1Q8TBF4 217 aaKnown RBP16.15■□□□□ 0.18
USP4-204ENST00000416417 PAPPAQ13219 1627 aa16.14■□□□□ 0.17
USP4-204ENST00000416417 KAT6BQ8WYB5 2073 aa16.14■□□□□ 0.17
USP4-204ENST00000416417 YY1P25490 414 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms