RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 BMP2KQ9NSY1 1161 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 EIF5P55010 431 aaKnown RBP15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 ANKRD1Q15327 319 aa15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 NEUROD6Q96NK8 337 aa15.63■□□□□ 0.09
CCDC88A-204ENST00000413716 TSNARE1Q96NA8 513 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 SWAP70Q9UH65 585 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 BRPF3Q9ULD4 1205 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 CCDC178Q5BJE1 867 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 BBXQ8WY36 941 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 RAB3IL1Q8TBN0 382 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 SMTNL1A8MU46 457 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 PKD2Q13563 968 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 CTR9Q6PD62 1173 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 ZNF526Q8TF50 670 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 DNAAF4Q8WXU2 420 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 COG3Q96JB2 828 aa15.62■□□□□ 0.09
CCDC88A-204ENST00000413716 ZSCAN12O43309 604 aa15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 CPSF2Q9P2I0 782 aaKnown RBP15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 FKBP5Q13451 457 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 CEP57L1Q8IYX8 460 aa15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 SERPINA10Q9UK55 444 aa15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 HSPA4P34932 840 aa15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 UACAQ9BZF9 1416 aa15.61■□□□□ 0.09
CCDC88A-204ENST00000413716 FSD2A1L4K1 749 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 CCDC6Q16204 474 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 FSD1Q9BTV5 496 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 POTEB2H3BUK9 544 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 ERCC6Q03468 1493 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 CCDC150Q8NCX0 1101 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 ELL2O00472 640 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 ANKS4BQ8N8V4 417 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 KIF18AQ8NI77 898 aa15.6■□□□□ 0.09
CCDC88A-204ENST00000413716 SYTL4Q96C24 671 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 VGFO15240 615 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 CTNNBL1Q8WYA6 563 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 SSX2IPQ9Y2D8 614 aa15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 EXOC6Q8TAG9 804 aa15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 IRX3P78415 501 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 NOL7Q9UMY1 257 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 CDKL5O76039 1030 aa15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 LARP1Q6PKG0 1096 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 PPP1R14CQ8TAE6 165 aa15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 GRPEL1Q9HAV7 217 aa15.59■□□□□ 0.09
CCDC88A-204ENST00000413716 PRDM10Q9NQV6 1147 aa15.58■□□□□ 0.09
CCDC88A-204ENST00000413716 IKBKGQ9Y6K9 419 aa15.58■□□□□ 0.09
CCDC88A-204ENST00000413716 KRT85P78386 507 aa15.58■□□□□ 0.09
CCDC88A-204ENST00000413716 FBF1Q8TES7 1133 aa15.58■□□□□ 0.09
CCDC88A-204ENST00000413716 CCDC57Q2TAC2 916 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 MSL1Q68DK7 614 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 UPF3BQ9BZI7 483 aaKnown RBP15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 CEP83Q9Y592 693 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 FILIP1Q7Z7B0 1213 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 ANAPC4Q9UJX5 808 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 CEP112Q8N8E3 955 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 DDX12PQ92771 950 aa15.58■□□□□ 0.08
CCDC88A-204ENST00000413716 WDR33Q9C0J8 1336 aaKnown RBP15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 NECTIN2Q92692 538 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 NAA15Q9BXJ9 866 aaKnown RBP15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 CBX1P83916 185 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 PTPN14Q15678 1187 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 CTNNA2P26232 953 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 SPECC1Q5M775 1068 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.57■□□□□ 0.082e-6■□□□□ 8.9
CCDC88A-204ENST00000413716 CCDC69A6NI79 296 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 FERMT1Q9BQL6 677 aa15.57■□□□□ 0.08
CCDC88A-204ENST00000413716 GGT6Q6P531 493 aa15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 NSRP1Q9H0G5 558 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 RAI14Q9P0K7 980 aa15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 PSMD1Q99460 953 aa15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 MRPS9P82933 396 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 MPHOSPH10O00566 681 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 CFAP58Q5T655 872 aa15.56■□□□□ 0.08
CCDC88A-204ENST00000413716 SFPQP23246 707 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 ATP2B2Q01814 1243 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 CCDC83Q8IWF9 413 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 SMARCC1Q92922 1105 aaPredicted RBP15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 LNPKQ9C0E8 428 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 MIPOL1Q8TD10 442 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 MKRN1Q9UHC7 482 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 ALS2CR12Q96Q35 445 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 NUP155O75694 1391 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 TNIKQ9UKE5 1360 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 DCAF8L1A6NGE4 600 aa15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 GNL3LQ9NVN8 582 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-204ENST00000413716 ZFYP08048 801 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 MXRA7P84157 204 aa15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 UBTFL1P0CB47 393 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 NEK4P51957 841 aa15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 CFAP100Q494V2 611 aa15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 APBB1IPQ7Z5R6 666 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 RPUSD2Q8IZ73 545 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 MACROD2A1Z1Q3 448 aa15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-204ENST00000413716 FOXD1Q16676 465 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 FKBP15Q5T1M5 1219 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 FEZ2Q9UHY8 353 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 FAM184BQ9ULE4 1060 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 IVLP07476 585 aa15.53■□□□□ 0.08
CCDC88A-204ENST00000413716 KLHL34Q8N239 644 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 164.8 ms