RNA–Protein interactions for RNA: ENST00000413517.1

HERPUD2-203, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 808 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-203ENST00000413517 VPS72Q15906 364 aa12.08□□□□□ -0.48
HERPUD2-203ENST00000413517 UPF1Q92900 1129 aaKnown RBP eCLIP12.08□□□□□ -0.48
HERPUD2-203ENST00000413517 PRDM11Q9NQV5 511 aa12.08□□□□□ -0.48
HERPUD2-203ENST00000413517 TTC21BQ7Z4L5 1316 aa12.08□□□□□ -0.48
HERPUD2-203ENST00000413517 NFAT5O94916 1531 aa12.07□□□□□ -0.48
HERPUD2-203ENST00000413517 CCER1Q8TC90 406 aaPredicted RBP12.07□□□□□ -0.48
HERPUD2-203ENST00000413517 SLC12A5Q9H2X9 1139 aa12.07□□□□□ -0.48
HERPUD2-203ENST00000413517 LTN1O94822 1766 aa12.07□□□□□ -0.48
HERPUD2-203ENST00000413517 CPDO75976 1380 aa12.06□□□□□ -0.48
HERPUD2-203ENST00000413517 KTN1Q86UP2 1357 aaKnown RBP12.06□□□□□ -0.48
HERPUD2-203ENST00000413517 NLRP13Q86W25 1043 aa12.06□□□□□ -0.48
HERPUD2-203ENST00000413517 A0A1W2PP64 1363 aa12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 WNK3Q9BYP7 1800 aa12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 TULP1O00294 542 aaPredicted RBP12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 GCP02774 474 aa12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 NLRP6P59044 892 aa12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 ZRANB1Q9UGI0 708 aa12.05□□□□□ -0.48
HERPUD2-203ENST00000413517 RGL2O15211 777 aa12.04□□□□□ -0.48
HERPUD2-203ENST00000413517 ZNF692Q9BU19 519 aaPredicted RBP12.04□□□□□ -0.48
HERPUD2-203ENST00000413517 SPATA31A5Q5VU36 1347 aa12.04□□□□□ -0.48
HERPUD2-203ENST00000413517 SPATA31A7Q8IWB4 1347 aa12.04□□□□□ -0.48
HERPUD2-203ENST00000413517 COL5A2P05997 1499 aaPredicted RBP12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 ONECUT3O60422 494 aaPredicted RBP12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 NME9Q86XW9 330 aa12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 TMC1Q8TDI8 760 aa12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 PUS7Q96PZ0 661 aaKnown RBP12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 CCDC9Q9Y3X0 531 aaKnown RBP12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 TTC21AQ8NDW8 1320 aa12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 EDC4Q6P2E9 1401 aaKnown RBP12.03□□□□□ -0.48
HERPUD2-203ENST00000413517 SEPT12Q8IYM1 358 aa12.02□□□□□ -0.49
HERPUD2-203ENST00000413517 USP31Q70CQ4 1352 aa12.02□□□□□ -0.49
HERPUD2-203ENST00000413517 KIF20BQ96Q89 1820 aa12.02□□□□□ -0.49
HERPUD2-203ENST00000413517 FAM98CQ17RN3 349 aaKnown RBP12.01□□□□□ -0.49
HERPUD2-203ENST00000413517 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.01□□□□□ -0.491e-6■■■□□ 15
HERPUD2-203ENST00000413517 STRN4Q9NRL3 753 aa12.01□□□□□ -0.49
HERPUD2-203ENST00000413517 SPATA31A1Q5TZJ5 1347 aa12.01□□□□□ -0.49
HERPUD2-203ENST00000413517 OVOS2A0A0J9YW53 1432 aa12.01□□□□□ -0.49
HERPUD2-203ENST00000413517 OVOS2Q6IE36 1432 aa12.01□□□□□ -0.49
HERPUD2-203ENST00000413517 PARP4Q9UKK3 1724 aaKnown RBP12□□□□□ -0.49
HERPUD2-203ENST00000413517 AATKQ6ZMQ8 1374 aa12□□□□□ -0.49
HERPUD2-203ENST00000413517 NINLQ9Y2I6 1382 aa12□□□□□ -0.49
HERPUD2-203ENST00000413517 ZBTB7CA1YPR0 619 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 SOX12O15370 315 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 C1QBPQ07021 282 aaKnown RBP11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 LARP1Q6PKG0 1096 aaKnown RBP11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 ERICH6Q7L0X2 663 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 ARHGEF25Q86VW2 580 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 ARXQ96QS3 562 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 AXIN2Q9Y2T1 843 aa11.99□□□□□ -0.49
HERPUD2-203ENST00000413517 RGPD2P0DJD1 1756 aa11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 TNS1Q9HBL0 1735 aaKnown RBP11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 ANKRD36BQ8N2N9 1353 aa11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 TMF1P82094 1093 aa11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 HDGFL2Q7Z4V5 671 aaPredicted RBP11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 TERF2IPQ9NYB0 399 aa11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 DAXXQ9UER7 740 aaPredicted RBP11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 GTF3C3Q9Y5Q9 886 aa11.98□□□□□ -0.49
HERPUD2-203ENST00000413517 LRRC37A3O60309 1634 aa11.97□□□□□ -0.49
HERPUD2-203ENST00000413517 ABCC6O95255 1503 aa11.97□□□□□ -0.49
HERPUD2-203ENST00000413517 SBF2Q86WG5 1849 aa11.96□□□□□ -0.49
HERPUD2-203ENST00000413517 HSPA5P11021 654 aaKnown RBP11.96□□□□□ -0.49
HERPUD2-203ENST00000413517 FAM182BQ5T319 152 aa11.96□□□□□ -0.49
HERPUD2-203ENST00000413517 KRT27Q7Z3Y8 459 aa11.96□□□□□ -0.49
HERPUD2-203ENST00000413517 USP35Q9P2H5 1018 aa11.96□□□□□ -0.49
HERPUD2-203ENST00000413517 CRB1P82279 1406 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 RGPD1P0DJD0 1748 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 PEAK1Q9H792 1746 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 A0A0G2JS52 829 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 MYT1Q01538 1121 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 KCNH5Q8NCM2 988 aa11.95□□□□□ -0.5
HERPUD2-203ENST00000413517 EVA1CP58658 441 aa11.94□□□□□ -0.5
HERPUD2-203ENST00000413517 BARGINQ6ZT62 677 aa11.94□□□□□ -0.5
HERPUD2-203ENST00000413517 ANKRD26Q9UPS8 1709 aa11.94□□□□□ -0.5
HERPUD2-203ENST00000413517 BLMP54132 1417 aaPredicted RBP11.94□□□□□ -0.5
HERPUD2-203ENST00000413517 WDR17Q8IZU2 1322 aa11.93□□□□□ -0.5
HERPUD2-203ENST00000413517 FBLN1P23142 703 aa11.93□□□□□ -0.5
HERPUD2-203ENST00000413517 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
HERPUD2-203ENST00000413517 CARD14Q9BXL6 1004 aa11.93□□□□□ -0.5
HERPUD2-203ENST00000413517 FAM208AQ9UK61 1670 aaKnown RBP11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 C11orf95C9JLR9 678 aaPredicted RBP11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 EIF4G2P78344 907 aaKnown RBP eCLIP11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 MAP2P11137 1827 aaKnown RBP11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 DISP2A7MBM2 1401 aa11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 NSD3Q9BZ95 1437 aa11.92□□□□□ -0.5
HERPUD2-203ENST00000413517 FYB1O15117 783 aa11.91□□□□□ -0.5
HERPUD2-203ENST00000413517 POLA2Q14181 598 aa11.91□□□□□ -0.5
HERPUD2-203ENST00000413517 GGNBP2Q9H3C7 697 aa11.91□□□□□ -0.5
HERPUD2-203ENST00000413517 CDCA8Q53HL2 280 aa11.9□□□□□ -0.5
HERPUD2-203ENST00000413517 TOM1L2Q6ZVM7 507 aa11.9□□□□□ -0.5
HERPUD2-203ENST00000413517 DEFB132Q7Z7B7 95 aa11.9□□□□□ -0.5
HERPUD2-203ENST00000413517 ERBB3P21860 1342 aa11.89□□□□□ -0.51
HERPUD2-203ENST00000413517 MAP3K19Q56UN5 1328 aa11.89□□□□□ -0.51
HERPUD2-203ENST00000413517 THRAP3Q9Y2W1 955 aaKnown RBP11.89□□□□□ -0.51
HERPUD2-203ENST00000413517 KAT6BQ8WYB5 2073 aa11.89□□□□□ -0.51
HERPUD2-203ENST00000413517 SHANK3Q9BYB0 1731 aa11.89□□□□□ -0.51
HERPUD2-203ENST00000413517 CCDC125Q86Z20 511 aa11.88□□□□□ -0.51
HERPUD2-203ENST00000413517 PLCD3Q8N3E9 789 aa11.88□□□□□ -0.51
HERPUD2-203ENST00000413517 COG3Q96JB2 828 aa11.88□□□□□ -0.51
HERPUD2-203ENST00000413517 CARD10Q9BWT7 1032 aa11.88□□□□□ -0.51
HERPUD2-203ENST00000413517 RREB1Q92766 1687 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms