RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 SPATA31A3Q5VYP0 1347 aa8.84□□□□□ -0.99
VPS41-204ENST00000413141 IL13P35225 146 aa8.84□□□□□ -0.99
VPS41-204ENST00000413141 CCDC146Q8IYE0 955 aa8.84□□□□□ -0.99
VPS41-204ENST00000413141 NUDCQ9Y266 331 aa8.84□□□□□ -0.99
VPS41-204ENST00000413141 ABCC6O95255 1503 aa8.84□□□□□ -0.99
VPS41-204ENST00000413141 U2SURPO15042 1029 aaKnown RBP8.83□□□□□ -1
VPS41-204ENST00000413141 U2AF1L5P0DN76 240 aaPredicted RBP8.83□□□□□ -1
VPS41-204ENST00000413141 U2AF1Q01081 240 aaKnown RBP eCLIP8.83□□□□□ -1
VPS41-204ENST00000413141 KCNH5Q8NCM2 988 aa8.83□□□□□ -1
VPS41-204ENST00000413141 SENP3-EIF4A1A0A087X0R7 540 aa8.82□□□□□ -1
VPS41-204ENST00000413141 HOXC9P31274 260 aa8.82□□□□□ -1
VPS41-204ENST00000413141 EIF4A2Q14240 407 aaKnown RBP8.82□□□□□ -1
VPS41-204ENST00000413141 HSP90AB2PQ58FF8 381 aa8.82□□□□□ -1
VPS41-204ENST00000413141 LMOD2Q6P5Q4 547 aa8.82□□□□□ -1
VPS41-204ENST00000413141 RUNDC1Q96C34 613 aa8.82□□□□□ -1
VPS41-204ENST00000413141 COL16A1Q07092 1604 aaPredicted RBP8.82□□□□□ -1
VPS41-204ENST00000413141 COL22A1Q8NFW1 1626 aaPredicted RBP8.82□□□□□ -1
VPS41-204ENST00000413141 CAMTA1Q9Y6Y1 1673 aa8.81□□□□□ -1
VPS41-204ENST00000413141 GCP02774 474 aa8.81□□□□□ -1
VPS41-204ENST00000413141 AMPHP49418 695 aa8.81□□□□□ -1
VPS41-204ENST00000413141 ZNF521Q96K83 1311 aa8.8□□□□□ -1
VPS41-204ENST00000413141 PHLPP1O60346 1717 aa8.8□□□□□ -1
VPS41-204ENST00000413141 APAF1O14727 1248 aa8.8□□□□□ -1
VPS41-204ENST00000413141 PLEKHF1Q96S99 279 aa8.8□□□□□ -1
VPS41-204ENST00000413141 RSPH6AQ9H0K4 717 aa8.8□□□□□ -1
VPS41-204ENST00000413141 LMO7Q8WWI1 1683 aa8.8□□□□□ -1
VPS41-204ENST00000413141 COL18A1P39060 1754 aa8.8□□□□□ -1
VPS41-204ENST00000413141 FAM208AQ9UK61 1670 aaKnown RBP8.79□□□□□ -1
VPS41-204ENST00000413141 CPDO75976 1380 aa8.79□□□□□ -1
VPS41-204ENST00000413141 KDRP35968 1356 aa8.79□□□□□ -1
VPS41-204ENST00000413141 FCHSD2O94868 740 aa8.79□□□□□ -1
VPS41-204ENST00000413141 ARHGEF25Q86VW2 580 aa8.79□□□□□ -1
VPS41-204ENST00000413141 NGEFQ8N5V2 710 aa8.79□□□□□ -1
VPS41-204ENST00000413141 IP6K1Q92551 441 aa8.79□□□□□ -1
VPS41-204ENST00000413141 SALL2Q9Y467 1007 aaPredicted RBP8.79□□□□□ -1
VPS41-204ENST00000413141 IGSF1Q8N6C5 1336 aa8.79□□□□□ -1
VPS41-204ENST00000413141 MAPK8IP3Q9UPT6 1336 aa8.79□□□□□ -1
VPS41-204ENST00000413141 PLEKHG5O94827 1062 aa8.78□□□□□ -1
VPS41-204ENST00000413141 HMOX1P09601 288 aa8.78□□□□□ -1
VPS41-204ENST00000413141 PRKAR2BP31323 418 aa8.78□□□□□ -1
VPS41-204ENST00000413141 TCP11L2Q8N4U5 519 aa8.78□□□□□ -1
VPS41-204ENST00000413141 PNNQ9H307 717 aaKnown RBP8.78□□□□□ -1
VPS41-204ENST00000413141 RGPD5Q99666 1765 aa8.78□□□□□ -1
VPS41-204ENST00000413141 NCAPD2Q15021 1401 aa8.78□□□□□ -1
VPS41-204ENST00000413141 RGPD2P0DJD1 1756 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 ZBTB7CA1YPR0 619 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 TOM1O60784 492 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 PDE3BQ13370 1112 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 AEBP1Q8IUX7 1158 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 CABLES1Q8TDN4 633 aa8.77□□□□□ -1.01
VPS41-204ENST00000413141 KIAA0232Q92628 1395 aa8.76□□□□□ -1.01
VPS41-204ENST00000413141 ZC3H6P61129 1189 aaKnown RBP8.76□□□□□ -1.01
VPS41-204ENST00000413141 CCDC27Q2M243 656 aa8.76□□□□□ -1.01
VPS41-204ENST00000413141 SULT6B1Q6IMI4 303 aa8.76□□□□□ -1.01
VPS41-204ENST00000413141 EYA1Q99502 592 aa8.76□□□□□ -1.01
VPS41-204ENST00000413141 RRP7AQ9Y3A4 280 aaKnown RBP8.76□□□□□ -1.01
VPS41-204ENST00000413141 ERBB3P21860 1342 aa8.76□□□□□ -1.01
VPS41-204ENST00000413141 NEFMP07197 916 aa8.75□□□□□ -1.01
VPS41-204ENST00000413141 TMPOP42166 694 aaKnown RBP8.75□□□□□ -1.01
VPS41-204ENST00000413141 LTV1Q96GA3 475 aaPredicted RBP8.75□□□□□ -1.01
VPS41-204ENST00000413141 DLG5Q8TDM6 1919 aa8.75□□□□□ -1.01
VPS41-204ENST00000413141 COL14A1Q05707 1796 aaKnown RBP8.74□□□□□ -1.01
VPS41-204ENST00000413141 LRRC37A3O60309 1634 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 UBAP1LF5GYI3 381 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 GOLGA2Q08379 1002 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 NEUROD2Q15784 382 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 NFE2L2Q16236 605 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 WWC1Q8IX03 1113 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 CERKQ8TCT0 537 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 ANKRD24Q8TF21 1146 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 LRRC59Q96AG4 307 aaKnown RBP8.74□□□□□ -1.01
VPS41-204ENST00000413141 CDCA7LQ96GN5 454 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 PHACTR3Q96KR7 559 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 AXIN2Q9Y2T1 843 aa8.74□□□□□ -1.01
VPS41-204ENST00000413141 COL5A2P05997 1499 aaPredicted RBP8.73□□□□□ -1.01
VPS41-204ENST00000413141 PIP4K2BP78356 416 aa8.73□□□□□ -1.01
VPS41-204ENST00000413141 TRIM35Q9UPQ4 493 aa8.73□□□□□ -1.01
VPS41-204ENST00000413141 PLCH1Q4KWH8 1693 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 E9PSI1 815 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 HAP1P54257 671 aaPredicted RBP8.72□□□□□ -1.01
VPS41-204ENST00000413141 RIPK4P57078 832 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 SLFN5Q08AF3 891 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 CHRNA2Q15822 529 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 NBPF6Q5VWK0 638 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 DUSP27Q5VZP5 1158 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 USHBP1Q8N6Y0 703 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 NBPF4Q96M43 638 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 SPINK5Q9NQ38 1064 aaPredicted RBP8.72□□□□□ -1.01
VPS41-204ENST00000413141 PRDM11Q9NQV5 511 aa8.72□□□□□ -1.01
VPS41-204ENST00000413141 LMOD3Q0VAK6 560 aa8.71□□□□□ -1.02
VPS41-204ENST00000413141 WDR63Q8IWG1 891 aa8.71□□□□□ -1.02
VPS41-204ENST00000413141 TRMT2AQ8IZ69 625 aaKnown RBP8.71□□□□□ -1.02
VPS41-204ENST00000413141 PLEKHG2Q9H7P9 1386 aa8.71□□□□□ -1.02
VPS41-204ENST00000413141 PKD1L3Q7Z443 1732 aa8.71□□□□□ -1.02
VPS41-204ENST00000413141 NRAPQ86VF7 1730 aa8.71□□□□□ -1.02
VPS41-204ENST00000413141 PARP4Q9UKK3 1724 aaKnown RBP8.71□□□□□ -1.02
VPS41-204ENST00000413141 IL16Q14005 1332 aa8.7□□□□□ -1.02
VPS41-204ENST00000413141 MEGF6O75095 1541 aa8.7□□□□□ -1.02
VPS41-204ENST00000413141 MTHFSDQ2M296 383 aaKnown RBP8.69□□□□□ -1.02
VPS41-204ENST00000413141 GAS2L2Q8NHY3 880 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms