RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SULT6B1Q6IMI4 303 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 CAMSAP2Q08AD1 1489 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 ARHGEF6Q15052 776 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 SYNE3Q6ZMZ3 975 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 ILDR1Q86SU0 546 aaPredicted RBP8.94□□□□□ -0.98
SCN9A-202ENST00000409435 PRM3Q9NNZ6 103 aa8.94□□□□□ -0.98
SCN9A-202ENST00000409435 NEUROD6Q96NK8 337 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 OGFOD1Q8N543 542 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 TRIM37O94972 964 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 SPON1Q9HCB6 807 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 GOLGA6L4A6NEF3 574 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 ATP2B2Q01814 1243 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 RASSF8Q8NHQ8 419 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 TMEM94Q12767 1356 aa8.93□□□□□ -0.98
SCN9A-202ENST00000409435 SLC3A2P08195 630 aaKnown RBP8.92□□□□□ -0.98
SCN9A-202ENST00000409435 NOM1Q5C9Z4 860 aaKnown RBP8.92□□□□□ -0.98
SCN9A-202ENST00000409435 TBC1D2BQ9UPU7 963 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 ATF5Q9Y2D1 282 aaPredicted RBP8.92□□□□□ -0.98
SCN9A-202ENST00000409435 PPP1R42Q7Z4L9 355 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 MPHOSPH10O00566 681 aaKnown RBP8.92□□□□□ -0.98
SCN9A-202ENST00000409435 GNPATO15228 680 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 RRS1Q15050 365 aaKnown RBP8.92□□□□□ -0.98
SCN9A-202ENST00000409435 CCDC30Q5VVM6 783 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 CRBNQ96SW2 442 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 NAIPQ13075 1403 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 TRIM6-TRIM34B2RNG4 842 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 H0YIN7 160 aa8.92□□□□□ -0.98
SCN9A-202ENST00000409435 RIMBP3CA6NJZ7 1639 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 RIMBP3BA6NNM3 1639 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 RIMBP3Q9UFD9 1639 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 TCIRG1Q13488 830 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 GNAI1P63096 354 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 TPRNQ4KMQ1 711 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 USHBP1Q8N6Y0 703 aa8.91□□□□□ -0.98
SCN9A-202ENST00000409435 CCDC57Q2TAC2 916 aa8.9□□□□□ -0.98
SCN9A-202ENST00000409435 RBM26Q5T8P6 1007 aaKnown RBP8.9□□□□□ -0.98
SCN9A-202ENST00000409435 SEPT12Q8IYM1 358 aa8.9□□□□□ -0.98
SCN9A-202ENST00000409435 KIF22Q14807 665 aa8.9□□□□□ -0.98
SCN9A-202ENST00000409435 VTI1AQ96AJ9 217 aa8.9□□□□□ -0.98
SCN9A-202ENST00000409435 TMEM132AQ24JP5 1023 aa8.9□□□□□ -0.98
SCN9A-202ENST00000409435 ACEP12821 1306 aa8.9□□□□□ -0.99
SCN9A-202ENST00000409435 PBRM1Q86U86 1689 aa8.9□□□□□ -0.99
SCN9A-202ENST00000409435 PRXQ9BXM0 1461 aa8.9□□□□□ -0.99
SCN9A-202ENST00000409435 ERICH2A1L162 156 aa8.9□□□□□ -0.99
SCN9A-202ENST00000409435 IFIT2P09913 472 aaKnown RBP8.9□□□□□ -0.99
SCN9A-202ENST00000409435 NYXQ9GZU5 481 aa8.9□□□□□ -0.99
SCN9A-202ENST00000409435 WASHC4Q2M389 1173 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 R3HCC1Q9Y3T6 440 aaKnown RBP8.89□□□□□ -0.99
SCN9A-202ENST00000409435 NEFHP12036 1026 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 JCADQ9P266 1359 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 UNC5CLQ8IV45 518 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 SLF2Q8IX21 1173 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 CRACR2BQ8N4Y2 399 aaPredicted RBP8.89□□□□□ -0.99
SCN9A-202ENST00000409435 CHD1O14646 1710 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 PSDA5PKW4 1024 aaPredicted RBP8.89□□□□□ -0.99
SCN9A-202ENST00000409435 PPP4R2Q9NY27 417 aa8.89□□□□□ -0.99
SCN9A-202ENST00000409435 CAVIN4Q5BKX8 364 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 FMNL2Q96PY5 1086 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 TRMT112Q9UI30 125 aaKnown RBP8.88□□□□□ -0.99
SCN9A-202ENST00000409435 ABT1Q9ULW3 272 aaKnown RBP8.88□□□□□ -0.99
SCN9A-202ENST00000409435 THOC2Q8NI27 1593 aaKnown RBP8.88□□□□□ -0.99
SCN9A-202ENST00000409435 GRIN3BO60391 1043 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 GNAT3A8MTJ3 354 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 GPS2Q13227 327 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 EYA3Q99504 573 aa8.88□□□□□ -0.99
SCN9A-202ENST00000409435 KIAA0556O60303 1618 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 MSL1Q68DK7 614 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 NOL8Q76FK4 1167 aaKnown RBP8.87□□□□□ -0.99
SCN9A-202ENST00000409435 HSCBQ8IWL3 235 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 SLC12A5Q9H2X9 1139 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 TEX35Q5T0J7 233 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 TPTE2Q6XPS3 522 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 SPATA31A6Q5VVP1 1343 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 TTC21AQ8NDW8 1320 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 DDX17Q92841 729 aaKnown RBP8.87□□□□□ -0.99
SCN9A-202ENST00000409435 ORAI2Q96SN7 254 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 CHMP4BP1P59074 171 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 TRDNQ13061 729 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 RRP12Q5JTH9 1297 aaKnown RBP8.87□□□□□ -0.99
SCN9A-202ENST00000409435 MTMR7Q9Y216 660 aa8.87□□□□□ -0.99
SCN9A-202ENST00000409435 HTATSF1O43719 755 aaKnown RBP8.86□□□□□ -0.99
SCN9A-202ENST00000409435 HDGFL1Q5TGJ6 251 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 NOS1P29475 1434 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 GPBP1L1Q9HC44 474 aaPredicted RBP8.86□□□□□ -0.99
SCN9A-202ENST00000409435 MAGI2Q86UL8 1455 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 TTC39AQ5SRH9 613 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 SUPT20HQ8NEM7 779 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 RBM17Q96I25 401 aaKnown RBP8.86□□□□□ -0.99
SCN9A-202ENST00000409435 IBSPP21815 317 aaPredicted RBP8.86□□□□□ -0.99
SCN9A-202ENST00000409435 HSP90AB4PQ58FF6 505 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 CCDC158Q5M9N0 1113 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 ZNF710Q8N1W2 664 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 KIAA1107Q9UPP5 1409 aa8.86□□□□□ -0.99
SCN9A-202ENST00000409435 PDE6BP35913 854 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 NLRP3Q96P20 1036 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 GBP4Q96PP9 640 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 CDC5LQ99459 802 aaKnown RBP8.85□□□□□ -0.99
SCN9A-202ENST00000409435 UGGT2Q9NYU1 1516 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 PRKAR2BP31323 418 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 SOGA3Q5TF21 947 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms