RNA–Protein interactions for RNA: ENST00000379053.4

LINC00654-201, long intergenic non-protein coding RNA 654, humanhuman

TSL 1 (best) BASIC

Gene LINC00654, Length 6,113 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00654-201ENST00000379053 NUP133Q8WUM0 1156 aa13.04□□□□□ -0.32
LINC00654-201ENST00000379053 ZHX3Q9H4I2 956 aa13.04□□□□□ -0.32
LINC00654-201ENST00000379053 PATL2C9JE40 543 aaKnown RBP13.04□□□□□ -0.32
LINC00654-201ENST00000379053 TSR2Q969E8 191 aaKnown RBP13.04□□□□□ -0.32
LINC00654-201ENST00000379053 NAT10Q9H0A0 1025 aaKnown RBP13.04□□□□□ -0.32
LINC00654-201ENST00000379053 CCDC173Q0VFZ6 552 aa13.04□□□□□ -0.32
LINC00654-201ENST00000379053 LRP2BPQ9P2M1 347 aa13.04□□□□□ -0.32
LINC00654-201ENST00000379053 CCDC69A6NI79 296 aa13.04□□□□□ -0.32
LINC00654-201ENST00000379053 PDILTQ8N807 584 aa13.03□□□□□ -0.32
LINC00654-201ENST00000379053 LRRC9Q6ZRR7 1453 aa13.03□□□□□ -0.32
LINC00654-201ENST00000379053 NUDT16Q96DE0 195 aaKnown RBP13.03□□□□□ -0.32
LINC00654-201ENST00000379053 NESP48681 1621 aa13.03□□□□□ -0.32
LINC00654-201ENST00000379053 TDO2P48775 406 aa13.03□□□□□ -0.32
LINC00654-201ENST00000379053 PDCL3Q9H2J4 239 aa13.03□□□□□ -0.32
LINC00654-201ENST00000379053 SPINK5Q9NQ38 1064 aaPredicted RBP13.02□□□□□ -0.32
LINC00654-201ENST00000379053 ERBINQ96RT1 1412 aa13.02□□□□□ -0.32
LINC00654-201ENST00000379053 ZNF710Q8N1W2 664 aa13.02□□□□□ -0.33
LINC00654-201ENST00000379053 MAGEC2Q9UBF1 373 aaPredicted RBP13.02□□□□□ -0.33
LINC00654-201ENST00000379053 NOB1Q9ULX3 412 aaKnown RBP13.02□□□□□ -0.33
LINC00654-201ENST00000379053 CCDC61Q9Y6R9 512 aa13.02□□□□□ -0.33
LINC00654-201ENST00000379053 ATAD2Q6PL18 1390 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 SNAPC4Q5SXM2 1469 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 AKNAQ7Z591 1439 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 ABCF2Q9UG63 623 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 GSE1Q14687 1217 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 STK38Q15208 465 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 LRRCC1Q9C099 1032 aa13.01□□□□□ -0.33
LINC00654-201ENST00000379053 NEK4P51957 841 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 AACSQ86V21 672 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 UBAC1Q9BSL1 405 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 ZNF219Q9P2Y4 722 aaPredicted RBP13□□□□□ -0.33
LINC00654-201ENST00000379053 LMTK3Q96Q04 1460 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 BRD4O60885 1362 aaPredicted RBP13□□□□□ -0.33
LINC00654-201ENST00000379053 PDCP20941 246 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 ZNF76P36508 570 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 RUFY1Q96T51 708 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 KINO60870 393 aaKnown RBP13□□□□□ -0.33
LINC00654-201ENST00000379053 MPRIPQ6WCQ1 1025 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 CDR1P51861 262 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 CADPS2Q86UW7 1296 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 MSH6P52701 1360 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 FOXO3O43524 673 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 ANKIB1Q9P2G1 1089 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 CLEC11AQ9Y240 323 aa13□□□□□ -0.33
LINC00654-201ENST00000379053 IDH1O75874 414 aaKnown RBP12.99□□□□□ -0.33
LINC00654-201ENST00000379053 TMEM87AQ8NBN3 555 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 SRGAP3O43295 1099 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 CRACR2BQ8N4Y2 399 aaPredicted RBP12.99□□□□□ -0.33
LINC00654-201ENST00000379053 CC2D2AQ9P2K1 1620 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 ZNF396Q96N95 335 aaPredicted RBP12.99□□□□□ -0.33
LINC00654-201ENST00000379053 CFTRP13569 1480 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 GNAT3A8MTJ3 354 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 CHMP4BP1P59074 171 aa12.99□□□□□ -0.33
LINC00654-201ENST00000379053 TEX14Q8IWB6 1497 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 METTL24Q5JXM2 366 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 GCC1Q96CN9 775 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 ANKRD30BQ9BXX2 1392 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 MAP4K4O95819 1239 aaPredicted RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 FILIP1LQ4L180 1135 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 USP5P45974 858 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 CEBPZQ03701 1054 aaKnown RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 JMYQ8N9B5 988 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 EXOC5O00471 708 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 SSBP05455 408 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 CEBPAP49715 358 aaPredicted RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 BRPF1P55201 1214 aaPredicted RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 SETQ01105 290 aaPredicted RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 TTLL5Q6EMB2 1281 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 DNAJC5BQ9UF47 199 aa12.98□□□□□ -0.33
LINC00654-201ENST00000379053 TROQ12816 1431 aaPredicted RBP12.98□□□□□ -0.33
LINC00654-201ENST00000379053 STK3Q13188 491 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 CAVIN4Q5BKX8 364 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 WDR78Q5VTH9 848 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 PHF8Q9UPP1 1060 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 MAP3K9P80192 1104 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 WAPLQ7Z5K2 1190 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 CAGE1Q8TC20 777 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 RPGRQ92834 1020 aaKnown RBP12.97□□□□□ -0.33
LINC00654-201ENST00000379053 CYP46A1Q9Y6A2 500 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 FMNL2Q96PY5 1086 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 CD109Q6YHK3 1445 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 MATR3P43243 847 aaKnown RBP eCLIP12.97□□□□□ -0.33
LINC00654-201ENST00000379053 PIP4K2AP48426 406 aaPredicted RBP12.97□□□□□ -0.33
LINC00654-201ENST00000379053 IFT57Q9NWB7 429 aa12.97□□□□□ -0.33
LINC00654-201ENST00000379053 MYCNP04198 464 aaPredicted RBP12.97□□□□□ -0.33
LINC00654-201ENST00000379053 MNS1Q8NEH6 495 aa12.96□□□□□ -0.33
LINC00654-201ENST00000379053 AIDAQ96BJ3 306 aa12.96□□□□□ -0.33
LINC00654-201ENST00000379053 NOL7Q9UMY1 257 aaKnown RBP12.96□□□□□ -0.33
LINC00654-201ENST00000379053 CTNNA3Q9UI47 895 aa12.96□□□□□ -0.33
LINC00654-201ENST00000379053 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.34
LINC00654-201ENST00000379053 PIBF1Q8WXW3 757 aa12.96□□□□□ -0.34
LINC00654-201ENST00000379053 POLR3DP05423 398 aaPredicted RBP12.95□□□□□ -0.34
LINC00654-201ENST00000379053 AMOTL2Q9Y2J4 779 aa12.95□□□□□ -0.34
LINC00654-201ENST00000379053 IFIT1P09914 478 aaKnown RBP12.95□□□□□ -0.34
LINC00654-201ENST00000379053 ZNF287Q9HBT7 754 aa12.95□□□□□ -0.34
LINC00654-201ENST00000379053 AK7Q96M32 723 aa12.95□□□□□ -0.34
LINC00654-201ENST00000379053 SCLT1Q96NL6 688 aa12.95□□□□□ -0.34
LINC00654-201ENST00000379053 BMP2KQ9NSY1 1161 aaPredicted RBP12.95□□□□□ -0.34
LINC00654-201ENST00000379053 BAG6P46379 1132 aa12.95□□□□□ -0.34
LINC00654-201ENST00000379053 MCM2P49736 904 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms