RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 GIMAP7Q8NHV1 300 aa14.7□□□□□ -0.06
VPS13A-204ENST00000376634 PPP1R1BQ9UD71 204 aaPredicted RBP14.69□□□□□ -0.06
VPS13A-204ENST00000376634 CYP46A1Q9Y6A2 500 aa14.69□□□□□ -0.06
VPS13A-204ENST00000376634 HECW1Q76N89 1606 aa14.69□□□□□ -0.06
VPS13A-204ENST00000376634 POTEJP0CG39 1038 aa14.69□□□□□ -0.06
VPS13A-204ENST00000376634 KIAA1328Q86T90 577 aa14.69□□□□□ -0.06
VPS13A-204ENST00000376634 GNAI2P04899 355 aa14.69□□□□□ -0.06
VPS13A-204ENST00000376634 SURF6O75683 361 aaKnown RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 NUTM2GQ5VZR2 741 aa14.68□□□□□ -0.06
VPS13A-204ENST00000376634 RBM5P52756 815 aaKnown RBP eCLIP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 NOL7Q9UMY1 257 aaKnown RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 MPHOSPH10O00566 681 aaKnown RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 ANAPC15P60006 121 aa14.68□□□□□ -0.06
VPS13A-204ENST00000376634 PPP1R12BO60237 982 aaPredicted RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 SSR1P43307 286 aaKnown RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 BMP2KQ9NSY1 1161 aaPredicted RBP14.68□□□□□ -0.06
VPS13A-204ENST00000376634 GAS2L2Q8NHY3 880 aa14.67□□□□□ -0.06
VPS13A-204ENST00000376634 PRPF40AO75400 957 aaKnown RBP14.67□□□□□ -0.06
VPS13A-204ENST00000376634 ZNF397Q8NF99 534 aaPredicted RBP14.67□□□□□ -0.06
VPS13A-204ENST00000376634 SOGA3Q5TF21 947 aa14.67□□□□□ -0.06
VPS13A-204ENST00000376634 FAM177A1Q8N128 213 aaPredicted RBP14.67□□□□□ -0.06
VPS13A-204ENST00000376634 ABTB2Q8N961 1025 aa14.66□□□□□ -0.06
VPS13A-204ENST00000376634 BRD4O60885 1362 aaPredicted RBP14.66□□□□□ -0.06
VPS13A-204ENST00000376634 KRT85P78386 507 aa14.66□□□□□ -0.06
VPS13A-204ENST00000376634 WDR33Q9C0J8 1336 aaKnown RBP14.66□□□□□ -0.06
VPS13A-204ENST00000376634 MPHOSPH8Q99549 860 aa14.66□□□□□ -0.06
VPS13A-204ENST00000376634 NF2P35240 595 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 DHX37Q8IY37 1157 aaKnown RBP14.65□□□□□ -0.06
VPS13A-204ENST00000376634 FAM177BA6PVY3 158 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 CEP57L1Q8IYX8 460 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 PTPRGP23470 1445 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 STAMBPO95630 424 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 RBM10P98175 930 aaKnown RBP14.65□□□□□ -0.06
VPS13A-204ENST00000376634 CFAP45Q9UL16 551 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 CCDC57Q2TAC2 916 aa14.65□□□□□ -0.06
VPS13A-204ENST00000376634 ZSCAN25Q6NSZ9 544 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 NUP133Q8WUM0 1156 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 ZNF76P36508 570 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 STK3Q13188 491 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 UQCRHLA0A096LP55 91 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 GOLGA6L10A0A0M3HER8 536 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 UQCRHP07919 91 aa14.64□□□□□ -0.07
VPS13A-204ENST00000376634 EPB41L2O43491 1005 aaKnown RBP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 SSBP05455 408 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 CETN2P41208 172 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 CCDC148Q8NFR7 591 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 TAF4BQ92750 862 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 PLEKHO1Q53GL0 409 aaPredicted RBP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 UBAC1Q9BSL1 405 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 FEZ1Q99689 392 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 CCDC102AQ96A19 550 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 ERICH4A6NGS2 130 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 SF3B2Q13435 895 aaKnown RBP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 TDO2P48775 406 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 CCT4P50991 539 aaKnown RBP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 MAP9Q49MG5 647 aa14.63□□□□□ -0.07
VPS13A-204ENST00000376634 SEC63Q9UGP8 760 aaKnown RBP14.63□□□□□ -0.07
VPS13A-204ENST00000376634 CEP63Q96MT8 703 aa14.62□□□□□ -0.07
VPS13A-204ENST00000376634 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
VPS13A-204ENST00000376634 AK9Q5TCS8 1911 aa14.62□□□□□ -0.07
VPS13A-204ENST00000376634 WASF1Q92558 559 aa14.62□□□□□ -0.07
VPS13A-204ENST00000376634 DDX11Q96FC9 970 aa14.62□□□□□ -0.07
VPS13A-204ENST00000376634 EIF5P55010 431 aaKnown RBP14.61□□□□□ -0.07
VPS13A-204ENST00000376634 TNIP1Q15025 636 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 RBM42Q9BTD8 480 aaKnown RBP14.61□□□□□ -0.07
VPS13A-204ENST00000376634 PPM1FP49593 454 aaPredicted RBP14.61□□□□□ -0.07
VPS13A-204ENST00000376634 NLRP6P59044 892 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 CCDC150Q8NCX0 1101 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 JPH4Q96JJ6 628 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 SRCIN1Q9C0H9 1055 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 CEP131Q9UPN4 1083 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 ARHGAP29Q52LW3 1261 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 SPATA32Q96LK8 384 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 CCDC7Q96M83 1385 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 CABP2Q9NPB3 220 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 PODXL2Q9NZ53 605 aa14.61□□□□□ -0.07
VPS13A-204ENST00000376634 IMMTQ16891 758 aaKnown RBP14.6□□□□□ -0.07
VPS13A-204ENST00000376634 VPS36Q86VN1 386 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 GCC1Q96CN9 775 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 SIL1Q9H173 461 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 PPP4R3AQ6IN85 833 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 FANCD2Q9BXW9 1451 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 RRP9O43818 475 aaKnown RBP14.6□□□□□ -0.07
VPS13A-204ENST00000376634 LARP1BQ659C4 914 aaKnown RBP14.6□□□□□ -0.07
VPS13A-204ENST00000376634 GAPVD1Q14C86 1478 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 STRN4Q9NRL3 753 aa14.6□□□□□ -0.07
VPS13A-204ENST00000376634 MAP2K1Q02750 393 aaPredicted RBP14.6□□□□□ -0.07
VPS13A-204ENST00000376634 FKBP4Q02790 459 aaKnown RBP eCLIP14.59□□□□□ -0.07
VPS13A-204ENST00000376634 CRACR2AQ9BSW2 395 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 GON4LQ3T8J9 2241 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 MYO10Q9HD67 2058 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 MCM3P25205 808 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 C1orf115Q9H7X2 142 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 SMTNL1A8MU46 457 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 SPATA24Q86W54 205 aa14.59□□□□□ -0.07
VPS13A-204ENST00000376634 UPF3BQ9BZI7 483 aaKnown RBP14.58□□□□□ -0.08
VPS13A-204ENST00000376634 SHTN1A0MZ66 631 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 SPA17Q15506 151 aa14.58□□□□□ -0.08
VPS13A-204ENST00000376634 GRIPAP1Q4V328 841 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms