RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 SLC26A8Q96RN1 970 aa7.17□□□□□ -1.26
VPS13B-203ENST00000358544 SMTNL1A8MU46 457 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 LRRFIP2Q9Y608 721 aaKnown RBP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 GNAI1P63096 354 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 AKAP17AQ02040 695 aaKnown RBP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 NBPF8Q3BBV2 869 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 PPP6R1Q9UPN7 881 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 KRT85P78386 507 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 CEP89Q96ST8 783 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 UPF3BQ9BZI7 483 aaKnown RBP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 MYRIPQ8NFW9 859 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 HSP90AB4PQ58FF6 505 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 STK11IPQ8N1F8 1099 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 MYOM3Q5VTT5 1437 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 NEFHP12036 1026 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 GSDMDP57764 484 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 ARHGAP29Q52LW3 1261 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 ZNF830Q96NB3 372 aaPredicted RBP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 TRMT1Q9NXH9 659 aaKnown RBP7.16□□□□□ -1.26
VPS13B-203ENST00000358544 STK26Q9P289 416 aa7.16□□□□□ -1.26
VPS13B-203ENST00000358544 GBP2P32456 591 aaPredicted RBP7.15□□□□□ -1.26
VPS13B-203ENST00000358544 CNTROBQ8N137 903 aa7.15□□□□□ -1.26
VPS13B-203ENST00000358544 LRSAM1Q6UWE0 723 aa7.15□□□□□ -1.26
VPS13B-203ENST00000358544 SPTA1P02549 2419 aa7.15□□□□□ -1.26
VPS13B-203ENST00000358544 ME1P48163 572 aa7.15□□□□□ -1.26
VPS13B-203ENST00000358544 PIP4K2AP48426 406 aaPredicted RBP7.15□□□□□ -1.26
VPS13B-203ENST00000358544 NOB1Q9ULX3 412 aaKnown RBP7.15□□□□□ -1.26
VPS13B-203ENST00000358544 NACADO15069 1562 aa7.15□□□□□ -1.26
VPS13B-203ENST00000358544 SOX12O15370 315 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 CPLX2Q6PUV4 134 aaKnown RBP7.15□□□□□ -1.27
VPS13B-203ENST00000358544 SLFN5Q08AF3 891 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 FAM177BA6PVY3 158 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 CASQ1P31415 396 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 SMC5Q8IY18 1101 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 CRACR2AQ9BSW2 395 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 C1orf115Q9H7X2 142 aa7.15□□□□□ -1.27
VPS13B-203ENST00000358544 LUZP1Q86V48 1076 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 CYP46A1Q9Y6A2 500 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 DHX37Q8IY37 1157 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 TSR2Q969E8 191 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC47Q96A33 483 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 SAFBQ15424 915 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 FAM177A1Q8N128 213 aaPredicted RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 LRPPRCP42704 1394 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 STX1AQ16623 288 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 LARP1BQ659C4 914 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 LIG1P18858 919 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 RAB3GAP1Q15042 981 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 WDR63Q8IWG1 891 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 SRRTQ9BXP5 876 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 SH2B1Q9NRF2 756 aaPredicted RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 RBM28Q9NW13 759 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 KIAA1328Q86T90 577 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 MYCBPQ99417 103 aaPredicted RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 HCLS1P14317 486 aaPredicted RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 CEBPZQ03701 1054 aaKnown RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 FILIP1LQ4L180 1135 aa7.14□□□□□ -1.27
VPS13B-203ENST00000358544 SMARCC1Q92922 1105 aaPredicted RBP7.14□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC148Q8NFR7 591 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 SCAND2PQ9GZW5 306 aaPredicted RBP7.13□□□□□ -1.27
VPS13B-203ENST00000358544 ZSCAN12O43309 604 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 ERLIN2O94905 339 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 URI1O94763 535 aaPredicted RBP7.13□□□□□ -1.27
VPS13B-203ENST00000358544 JMYQ8N9B5 988 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 SNX21Q969T3 373 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC150Q8NCX0 1101 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 EXOSC9Q06265 439 aaKnown RBP7.13□□□□□ -1.27
VPS13B-203ENST00000358544 ZNHIT6Q9NWK9 470 aaKnown RBP7.13□□□□□ -1.27
VPS13B-203ENST00000358544 APC2O95996 2303 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 BANK1Q8NDB2 785 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS13B-203ENST00000358544 MCM3P25205 808 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 PDRG1Q9NUG6 133 aa7.13□□□□□ -1.27
VPS13B-203ENST00000358544 G3BP1Q13283 466 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 EPB41L2O43491 1005 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 DIAPH1O60610 1272 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 CAVIN2O95810 425 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.12□□□□□ -1.276e-7■■■■□ 20.3
VPS13B-203ENST00000358544 CKAP2LQ8IYA6 745 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 CCDC9Q9Y3X0 531 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 NCOA1Q15788 1441 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 SNW1Q13573 536 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 SKILP12757 684 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 GTF3C6Q969F1 213 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 FSD1Q9BTV5 496 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 FAM200AQ8TCP9 573 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 TMC6Q7Z403 805 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 KIAA0100Q14667 2235 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 NFXL1Q6ZNB6 911 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 MYO7AQ13402 2215 aa7.12□□□□□ -1.27
VPS13B-203ENST00000358544 DDX19AQ9NUU7 478 aaKnown RBP7.12□□□□□ -1.27
VPS13B-203ENST00000358544 CTAGE5O15320 804 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 GBP6Q6ZN66 633 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 V9GYY5 206 aaPredicted RBP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 NPM1P06748 294 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 SARNPP82979 210 aaKnown RBP7.11□□□□□ -1.27
VPS13B-203ENST00000358544 KNTC1P50748 2209 aa7.11□□□□□ -1.27
VPS13B-203ENST00000358544 CAPN2P17655 700 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms