RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 HOXC9P31274 260 aa24.64■■□□□ 1.54
CLN3-204ENST00000357857 SOS2Q07890 1332 aaPredicted RBP24.64■■□□□ 1.53
CLN3-204ENST00000357857 RSPH6AQ9H0K4 717 aa24.64■■□□□ 1.53
CLN3-204ENST00000357857 ARHGEF10O15013 1369 aa24.63■■□□□ 1.53
CLN3-204ENST00000357857 ZNF521Q96K83 1311 aa24.63■■□□□ 1.53
CLN3-204ENST00000357857 MAPK8IP3Q9UPT6 1336 aa24.63■■□□□ 1.53
CLN3-204ENST00000357857 CRYBG1Q9Y4K1 1723 aa24.62■■□□□ 1.53
CLN3-204ENST00000357857 PLEKHG5O94827 1062 aa24.61■■□□□ 1.53
CLN3-204ENST00000357857 HMOX1P09601 288 aa24.61■■□□□ 1.53
CLN3-204ENST00000357857 ROBO1Q9Y6N7 1651 aa24.6■■□□□ 1.53
CLN3-204ENST00000357857 PRKAR2BP31323 418 aa24.6■■□□□ 1.53
CLN3-204ENST00000357857 NCBP3Q53F19 620 aaKnown RBP24.6■■□□□ 1.53
CLN3-204ENST00000357857 IP6K1Q92551 441 aa24.59■■□□□ 1.53
CLN3-204ENST00000357857 RRP7AQ9Y3A4 280 aaKnown RBP24.59■■□□□ 1.53
CLN3-204ENST00000357857 NEFMP07197 916 aa24.58■■□□□ 1.53
CLN3-204ENST00000357857 ARHGEF25Q86VW2 580 aa24.58■■□□□ 1.53
CLN3-204ENST00000357857 NEUROD2Q15784 382 aa24.58■■□□□ 1.52
CLN3-204ENST00000357857 CDCA7LQ96GN5 454 aa24.58■■□□□ 1.52
CLN3-204ENST00000357857 ZBTB7CA1YPR0 619 aa24.57■■□□□ 1.52
CLN3-204ENST00000357857 GOLGA2Q08379 1002 aa24.56■■□□□ 1.52
CLN3-204ENST00000357857 CCDC27Q2M243 656 aa24.56■■□□□ 1.52
CLN3-204ENST00000357857 TMPOP42166 694 aaKnown RBP24.55■■□□□ 1.52
CLN3-204ENST00000357857 WWC1Q8IX03 1113 aa24.55■■□□□ 1.52
CLN3-204ENST00000357857 SULT6B1Q6IMI4 303 aa24.55■■□□□ 1.52
CLN3-204ENST00000357857 CERKQ8TCT0 537 aa24.55■■□□□ 1.52
CLN3-204ENST00000357857 PHF23Q9BUL5 403 aaPredicted RBP24.55■■□□□ 1.52
CLN3-204ENST00000357857 GTF3C3Q9Y5Q9 886 aa24.55■■□□□ 1.52
CLN3-204ENST00000357857 AEBP1Q8IUX7 1158 aa24.53■■□□□ 1.52
CLN3-204ENST00000357857 AHDC1Q5TGY3 1603 aaPredicted RBP24.53■■□□□ 1.52
CLN3-204ENST00000357857 IGSF1Q8N6C5 1336 aa24.53■■□□□ 1.52
CLN3-204ENST00000357857 RGPD5Q99666 1765 aa24.53■■□□□ 1.52
CLN3-204ENST00000357857 CABLES1Q8TDN4 633 aa24.52■■□□□ 1.52
CLN3-204ENST00000357857 LTV1Q96GA3 475 aaPredicted RBP24.52■■□□□ 1.52
CLN3-204ENST00000357857 EYA1Q99502 592 aa24.52■■□□□ 1.52
CLN3-204ENST00000357857 ABCA3Q99758 1704 aa24.51■■□□□ 1.51
CLN3-204ENST00000357857 ZC3H6P61129 1189 aaKnown RBP24.51■■□□□ 1.51
CLN3-204ENST00000357857 PHACTR3Q96KR7 559 aa24.51■■□□□ 1.51
CLN3-204ENST00000357857 DLG5Q8TDM6 1919 aa24.51■■□□□ 1.51
CLN3-204ENST00000357857 KDRP35968 1356 aa24.5■■□□□ 1.51
CLN3-204ENST00000357857 RGPD2P0DJD1 1756 aa24.5■■□□□ 1.51
CLN3-204ENST00000357857 SLFN5Q08AF3 891 aa24.49■■□□□ 1.51
CLN3-204ENST00000357857 COL18A1P39060 1754 aa24.49■■□□□ 1.51
CLN3-204ENST00000357857 RIPK4P57078 832 aa24.49■■□□□ 1.51
CLN3-204ENST00000357857 NFE2L2Q16236 605 aa24.49■■□□□ 1.51
CLN3-204ENST00000357857 WDR63Q8IWG1 891 aa24.49■■□□□ 1.51
CLN3-204ENST00000357857 SUPT16HQ9Y5B9 1047 aaKnown RBP24.48■■□□□ 1.51
CLN3-204ENST00000357857 ABCC6O95255 1503 aa24.48■■□□□ 1.51
CLN3-204ENST00000357857 E9PSI1 815 aa24.47■■□□□ 1.51
CLN3-204ENST00000357857 TOM1O60784 492 aa24.47■■□□□ 1.51
CLN3-204ENST00000357857 DUSP27Q5VZP5 1158 aa24.47■■□□□ 1.51
CLN3-204ENST00000357857 TRIM35Q9UPQ4 493 aa24.47■■□□□ 1.51
CLN3-204ENST00000357857 CPDO75976 1380 aa24.46■■□□□ 1.51
CLN3-204ENST00000357857 TRMT2AQ8IZ69 625 aaKnown RBP24.46■■□□□ 1.51
CLN3-204ENST00000357857 SPINK5Q9NQ38 1064 aaPredicted RBP24.45■■□□□ 1.5
CLN3-204ENST00000357857 PHLPP1O60346 1717 aa24.44■■□□□ 1.5
CLN3-204ENST00000357857 ANKRD24Q8TF21 1146 aa24.44■■□□□ 1.5
CLN3-204ENST00000357857 AXIN2Q9Y2T1 843 aa24.44■■□□□ 1.5
CLN3-204ENST00000357857 KIAA0232Q92628 1395 aa24.43■■□□□ 1.5
CLN3-204ENST00000357857 LRRC59Q96AG4 307 aaKnown RBP24.43■■□□□ 1.5
CLN3-204ENST00000357857 CAMTA1Q9Y6Y1 1673 aa24.42■■□□□ 1.5
CLN3-204ENST00000357857 FBXO41Q8TF61 875 aa24.42■■□□□ 1.5
CLN3-204ENST00000357857 HAP1P54257 671 aaPredicted RBP24.41■■□□□ 1.5
CLN3-204ENST00000357857 NBPF6Q5VWK0 638 aa24.41■■□□□ 1.5
CLN3-204ENST00000357857 NBPF4Q96M43 638 aa24.41■■□□□ 1.5
CLN3-204ENST00000357857 FAM208AQ9UK61 1670 aaKnown RBP24.4■■□□□ 1.5
CLN3-204ENST00000357857 NEFLP07196 543 aa24.4■■□□□ 1.5
CLN3-204ENST00000357857 LMOD3Q0VAK6 560 aa24.4■■□□□ 1.5
CLN3-204ENST00000357857 COL22A1Q8NFW1 1626 aaPredicted RBP24.39■■□□□ 1.5
CLN3-204ENST00000357857 USHBP1Q8N6Y0 703 aa24.39■■□□□ 1.5
CLN3-204ENST00000357857 ERBB3P21860 1342 aa24.39■■□□□ 1.49
CLN3-204ENST00000357857 COL16A1Q07092 1604 aaPredicted RBP24.39■■□□□ 1.49
CLN3-204ENST00000357857 CHRNA2Q15822 529 aa24.38■■□□□ 1.49
CLN3-204ENST00000357857 RCAN3Q9UKA8 241 aa24.38■■□□□ 1.49
CLN3-204ENST00000357857 NCAPD2Q15021 1401 aa24.38■■□□□ 1.49
CLN3-204ENST00000357857 IL16Q14005 1332 aa24.38■■□□□ 1.49
CLN3-204ENST00000357857 PIP4K2BP78356 416 aa24.38■■□□□ 1.49
CLN3-204ENST00000357857 LMO7Q8WWI1 1683 aa24.37■■□□□ 1.49
CLN3-204ENST00000357857 UBAP1LF5GYI3 381 aa24.37■■□□□ 1.49
CLN3-204ENST00000357857 ILDR1Q86SU0 546 aaPredicted RBP24.37■■□□□ 1.49
CLN3-204ENST00000357857 MYH16Q9H6N6 1097 aa24.36■■□□□ 1.49
CLN3-204ENST00000357857 PRDM11Q9NQV5 511 aa24.36■■□□□ 1.49
CLN3-204ENST00000357857 GAS2L2Q8NHY3 880 aa24.35■■□□□ 1.49
CLN3-204ENST00000357857 CALD1Q05682 793 aaKnown RBP24.34■■□□□ 1.49
CLN3-204ENST00000357857 MTHFSDQ2M296 383 aaKnown RBP24.34■■□□□ 1.49
CLN3-204ENST00000357857 RNF123Q5XPI4 1314 aa24.33■■□□□ 1.49
CLN3-204ENST00000357857 FKBP8Q14318 412 aa24.32■■□□□ 1.48
CLN3-204ENST00000357857 CSB-PGBD3P0DP91 1061 aa24.3■■□□□ 1.48
CLN3-204ENST00000357857 THUMPD2Q9BTF0 503 aaKnown RBP24.3■■□□□ 1.48
CLN3-204ENST00000357857 FAM83GA6ND36 823 aa24.3■■□□□ 1.48
CLN3-204ENST00000357857 NLRP2Q9NX02 1062 aa24.3■■□□□ 1.48
CLN3-204ENST00000357857 FANCIQ9NVI1 1328 aa24.29■■□□□ 1.48
CLN3-204ENST00000357857 DCTN1Q14203 1278 aa24.27■■□□□ 1.48
CLN3-204ENST00000357857 COL5A2P05997 1499 aaPredicted RBP24.27■■□□□ 1.48
CLN3-204ENST00000357857 TSR2Q969E8 191 aaKnown RBP24.27■■□□□ 1.48
CLN3-204ENST00000357857 IFT57Q9NWB7 429 aa24.27■■□□□ 1.48
CLN3-204ENST00000357857 COL14A1Q05707 1796 aaKnown RBP24.26■■□□□ 1.47
CLN3-204ENST00000357857 RTF1Q92541 710 aaKnown RBP24.26■■□□□ 1.47
CLN3-204ENST00000357857 HTATSF1O43719 755 aaKnown RBP24.25■■□□□ 1.47
CLN3-204ENST00000357857 RRP1P56182 461 aaKnown RBP24.25■■□□□ 1.47
CLN3-204ENST00000357857 GNAI1P63096 354 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms