RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 MAP2K1Q02750 393 aaPredicted RBP20.36■□□□□ 0.85
COL27A1-201ENST00000356083 PDE3BQ13370 1112 aa20.36■□□□□ 0.85
COL27A1-201ENST00000356083 C1orf115Q9H7X2 142 aa20.36■□□□□ 0.85
COL27A1-201ENST00000356083 RBM10P98175 930 aaKnown RBP20.36■□□□□ 0.85
COL27A1-201ENST00000356083 C22orf23Q9BZE7 217 aa20.36■□□□□ 0.85
COL27A1-201ENST00000356083 MYBBP1AQ9BQG0 1328 aaKnown RBP20.35■□□□□ 0.85
COL27A1-201ENST00000356083 STAMBPO95630 424 aa20.35■□□□□ 0.85
COL27A1-201ENST00000356083 CFAP45Q9UL16 551 aa20.35■□□□□ 0.85
COL27A1-201ENST00000356083 SMC1AQ14683 1233 aaKnown RBP20.35■□□□□ 0.85
COL27A1-201ENST00000356083 ZNF396Q96N95 335 aaPredicted RBP20.35■□□□□ 0.85
COL27A1-201ENST00000356083 MRPS9P82933 396 aaKnown RBP20.34■□□□□ 0.85
COL27A1-201ENST00000356083 CCDC57Q2TAC2 916 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 DNA2P51530 1060 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 INCENPQ9NQS7 918 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 POTEJP0CG39 1038 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 CBX1P83916 185 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 NEK4P51957 841 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 RRP1P56182 461 aaKnown RBP20.34■□□□□ 0.85
COL27A1-201ENST00000356083 ABCF2Q9UG63 623 aa20.34■□□□□ 0.85
COL27A1-201ENST00000356083 CCDC144AA2RUR9 1427 aa20.33■□□□□ 0.85
COL27A1-201ENST00000356083 LRP2BPQ9P2M1 347 aa20.33■□□□□ 0.85
COL27A1-201ENST00000356083 NACAP1Q9BZK3 213 aa20.33■□□□□ 0.84
COL27A1-201ENST00000356083 PANK1Q8TE04 598 aa20.33■□□□□ 0.84
COL27A1-201ENST00000356083 MAP3K9P80192 1104 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 PPP4R3AQ6IN85 833 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 CCDC39Q9UFE4 941 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 LRRCC1Q9C099 1032 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 VTI1AQ96AJ9 217 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 ZNF354CQ86Y25 554 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 DNAI2Q9GZS0 605 aa20.32■□□□□ 0.84
COL27A1-201ENST00000356083 PRPF40AO75400 957 aaKnown RBP20.31■□□□□ 0.84
COL27A1-201ENST00000356083 ARL1P40616 181 aaPredicted RBP20.31■□□□□ 0.84
COL27A1-201ENST00000356083 GSTTP1A0A1W2PQM5 241 aa20.31■□□□□ 0.84
COL27A1-201ENST00000356083 TMOD2Q9NZR1 351 aa20.31■□□□□ 0.84
COL27A1-201ENST00000356083 XPCQ01831 940 aaPredicted RBP20.31■□□□□ 0.84
COL27A1-201ENST00000356083 RAB3GAP2Q9H2M9 1393 aa20.31■□□□□ 0.84
COL27A1-201ENST00000356083 RABEP1Q15276 862 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 CCDC30Q5VVM6 783 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 JAKMIP3Q5VZ66 844 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 CABP2Q9NPB3 220 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 EIF5P55010 431 aaKnown RBP20.3■□□□□ 0.84
COL27A1-201ENST00000356083 GGNBP2Q9H3C7 697 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.3■□□□□ 0.843e-7■□□□□ 8.3
COL27A1-201ENST00000356083 RAI14Q9P0K7 980 aa20.3■□□□□ 0.84
COL27A1-201ENST00000356083 CRACR2BQ8N4Y2 399 aaPredicted RBP20.3■□□□□ 0.84
COL27A1-201ENST00000356083 TNIP1Q15025 636 aa20.29■□□□□ 0.84
COL27A1-201ENST00000356083 UACAQ9BZF9 1416 aa20.28■□□□□ 0.84
COL27A1-201ENST00000356083 PIP4K2AP48426 406 aaPredicted RBP20.28■□□□□ 0.84
COL27A1-201ENST00000356083 UBAC1Q9BSL1 405 aa20.28■□□□□ 0.84
COL27A1-201ENST00000356083 EPB41L2O43491 1005 aaKnown RBP20.28■□□□□ 0.84
COL27A1-201ENST00000356083 TSPY26PQ9H489 355 aa20.28■□□□□ 0.84
COL27A1-201ENST00000356083 TNMDQ9H2S6 317 aa20.28■□□□□ 0.84
COL27A1-201ENST00000356083 FAM69CQ0P6D2 419 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 JMYQ8N9B5 988 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 TSHZ2Q9NRE2 1034 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 ANKIB1Q9P2G1 1089 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 PABPN1LA6NDY0 278 aaKnown RBP20.27■□□□□ 0.84
COL27A1-201ENST00000356083 CCP110O43303 1012 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 CTNNA2P26232 953 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 TICAM2Q86XR7 235 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 CCDC150Q8NCX0 1101 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 CCDC102AQ96A19 550 aa20.27■□□□□ 0.84
COL27A1-201ENST00000356083 GNAI1P63096 354 aa20.27■□□□□ 0.83
COL27A1-201ENST00000356083 FERMT2Q96AC1 680 aa20.27■□□□□ 0.83
COL27A1-201ENST00000356083 ERICH4A6NGS2 130 aa20.27■□□□□ 0.83
COL27A1-201ENST00000356083 CEP57L1Q8IYX8 460 aa20.26■□□□□ 0.83
COL27A1-201ENST00000356083 TMEM132EQ6IEE7 984 aa20.26■□□□□ 0.83
COL27A1-201ENST00000356083 TMCO5BA8MYB1 307 aa20.26■□□□□ 0.83
COL27A1-201ENST00000356083 PPM1EQ8WY54 764 aa20.26■□□□□ 0.83
COL27A1-201ENST00000356083 PDCP20941 246 aa20.26■□□□□ 0.83
COL27A1-201ENST00000356083 MINDY4BA8MYZ0 360 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 CETN2P41208 172 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 RUNDC1Q96C34 613 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 PROSER2Q86WR7 435 aaPredicted RBP20.25■□□□□ 0.83
COL27A1-201ENST00000356083 NOL7Q9UMY1 257 aaKnown RBP20.25■□□□□ 0.83
COL27A1-201ENST00000356083 GPRASP1Q5JY77 1395 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 TATP17735 454 aaPredicted RBP20.25■□□□□ 0.83
COL27A1-201ENST00000356083 SLC4A8Q2Y0W8 1093 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 CCDC66A2RUB6 948 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 GIMAP7Q8NHV1 300 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 SLC26A8Q96RN1 970 aa20.25■□□□□ 0.83
COL27A1-201ENST00000356083 SEC63Q9UGP8 760 aaKnown RBP20.25■□□□□ 0.83
COL27A1-201ENST00000356083 POLR3DP05423 398 aaPredicted RBP20.25■□□□□ 0.83
COL27A1-201ENST00000356083 CCDC178Q5BJE1 867 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 PUF60Q9UHX1 559 aaKnown RBP20.24■□□□□ 0.83
COL27A1-201ENST00000356083 RGS22Q8NE09 1264 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 DACH1Q9UI36 760 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 WWC3Q9ULE0 1092 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 MTHFSP49914 203 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 HOOK3Q86VS8 718 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 TAF4BQ92750 862 aa20.24■□□□□ 0.83
COL27A1-201ENST00000356083 LETM1O95202 739 aaPredicted RBP20.23■□□□□ 0.83
COL27A1-201ENST00000356083 SSX2IPQ9Y2D8 614 aa20.23■□□□□ 0.83
COL27A1-201ENST00000356083 IDH1O75874 414 aaKnown RBP20.23■□□□□ 0.83
COL27A1-201ENST00000356083 KLHL10Q6JEL2 608 aa20.23■□□□□ 0.83
COL27A1-201ENST00000356083 ZNF397Q8NF99 534 aaPredicted RBP20.23■□□□□ 0.83
COL27A1-201ENST00000356083 SMG6Q86US8 1419 aaKnown RBP20.23■□□□□ 0.83
COL27A1-201ENST00000356083 TXLNBQ8N3L3 684 aa20.23■□□□□ 0.83
COL27A1-201ENST00000356083 HIP1O00291 1037 aa20.23■□□□□ 0.83
COL27A1-201ENST00000356083 PPP1R12BO60237 982 aaPredicted RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms