RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CTDP1Q9Y5B0 961 aaPredicted RBP18.08■□□□□ 0.48
COL17A1-201ENST00000353479 NUP160Q12769 1436 aa18.08■□□□□ 0.48
COL17A1-201ENST00000353479 PHF14O94880 888 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 KIAA2012Q0VF49 1180 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 DDX49Q9Y6V7 483 aaKnown RBP18.07■□□□□ 0.48
COL17A1-201ENST00000353479 SLFN5Q08AF3 891 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 PBRM1Q86U86 1689 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 TBC1D2BQ9UPU7 963 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 ABCC2Q92887 1545 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 MVPQ14764 893 aaKnown RBP18.07■□□□□ 0.48
COL17A1-201ENST00000353479 ACEP12821 1306 aa18.07■□□□□ 0.48
COL17A1-201ENST00000353479 ABCC10Q5T3U5 1492 aa18.06■□□□□ 0.48
COL17A1-201ENST00000353479 PTCD1O75127 700 aaKnown RBP18.05■□□□□ 0.48
COL17A1-201ENST00000353479 DUSP27Q5VZP5 1158 aa18.05■□□□□ 0.48
COL17A1-201ENST00000353479 DMRT2Q9Y5R5 561 aa18.05■□□□□ 0.48
COL17A1-201ENST00000353479 FOSBP53539 338 aa18.04■□□□□ 0.48
COL17A1-201ENST00000353479 PPP1R1BQ9UD71 204 aaPredicted RBP18.04■□□□□ 0.48
COL17A1-201ENST00000353479 VPS37CA5D8V6 355 aaPredicted RBP18.04■□□□□ 0.48
COL17A1-201ENST00000353479 TTC39AQ5SRH9 613 aa18.04■□□□□ 0.48
COL17A1-201ENST00000353479 SMC3Q9UQE7 1217 aa18.04■□□□□ 0.48
COL17A1-201ENST00000353479 DISP1Q96F81 1524 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 LRPPRCP42704 1394 aaKnown RBP18.03■□□□□ 0.48
COL17A1-201ENST00000353479 AMOTQ4VCS5 1084 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 CCDC158Q5M9N0 1113 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 LRRCC1Q9C099 1032 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 TMOD3Q9NYL9 352 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 RIMS2Q9UQ26 1411 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 SAMD1Q6SPF0 538 aaPredicted RBP18.03■□□□□ 0.48
COL17A1-201ENST00000353479 MPRIPQ6WCQ1 1025 aa18.03■□□□□ 0.48
COL17A1-201ENST00000353479 CCDC57Q2TAC2 916 aa18.02■□□□□ 0.48
COL17A1-201ENST00000353479 CADPS2Q86UW7 1296 aa18.02■□□□□ 0.48
COL17A1-201ENST00000353479 NCBP3Q53F19 620 aaKnown RBP18.02■□□□□ 0.47
COL17A1-201ENST00000353479 TCOF1Q13428 1488 aaKnown RBP18.02■□□□□ 0.47
COL17A1-201ENST00000353479 SRGAP3O43295 1099 aa18.01■□□□□ 0.47
COL17A1-201ENST00000353479 BICDL1Q6ZP65 573 aa18.01■□□□□ 0.47
COL17A1-201ENST00000353479 IFT57Q9NWB7 429 aa18.01■□□□□ 0.47
COL17A1-201ENST00000353479 STARD3NLO95772 234 aa18.01■□□□□ 0.47
COL17A1-201ENST00000353479 TAF7Q15545 349 aaPredicted RBP18.01■□□□□ 0.47
COL17A1-201ENST00000353479 MPHOSPH8Q99549 860 aa18■□□□□ 0.47
COL17A1-201ENST00000353479 CFAP43Q8NDM7 1665 aa18■□□□□ 0.47
COL17A1-201ENST00000353479 MTMR7Q9Y216 660 aa18■□□□□ 0.47
COL17A1-201ENST00000353479 NSD2O96028 1365 aa17.99■□□□□ 0.47
COL17A1-201ENST00000353479 FBLN1P23142 703 aa17.99■□□□□ 0.47
COL17A1-201ENST00000353479 TMEM57Q8N5G2 664 aa17.99■□□□□ 0.47
COL17A1-201ENST00000353479 NGLY1Q96IV0 654 aa17.99■□□□□ 0.47
COL17A1-201ENST00000353479 CCDC85AQ96PX6 553 aaPredicted RBP17.99■□□□□ 0.47
COL17A1-201ENST00000353479 PES1O00541 588 aaKnown RBP17.99■□□□□ 0.47
COL17A1-201ENST00000353479 GNL3LQ9NVN8 582 aaKnown RBP17.99■□□□□ 0.47
COL17A1-201ENST00000353479 PSMA5P28066 241 aa17.98■□□□□ 0.47
COL17A1-201ENST00000353479 TPD52L1Q16890 204 aaPredicted RBP17.98■□□□□ 0.47
COL17A1-201ENST00000353479 CHMP5Q9NZZ3 219 aa17.98■□□□□ 0.47
COL17A1-201ENST00000353479 TCEAL9Q9UHQ7 104 aa17.98■□□□□ 0.47
COL17A1-201ENST00000353479 HIP1O00291 1037 aa17.98■□□□□ 0.47
COL17A1-201ENST00000353479 MAP4K4O95819 1239 aaPredicted RBP17.98■□□□□ 0.47
COL17A1-201ENST00000353479 ABCA5Q8WWZ7 1642 aa17.98■□□□□ 0.47
COL17A1-201ENST00000353479 CHRNA2Q15822 529 aa17.97■□□□□ 0.47
COL17A1-201ENST00000353479 SKOR2Q2VWA4 1001 aaPredicted RBP17.97■□□□□ 0.47
COL17A1-201ENST00000353479 TTC21BQ7Z4L5 1316 aa17.97■□□□□ 0.47
COL17A1-201ENST00000353479 MSH6P52701 1360 aa17.97■□□□□ 0.47
COL17A1-201ENST00000353479 ABCC11Q96J66 1382 aa17.97■□□□□ 0.47
COL17A1-201ENST00000353479 AACSQ86V21 672 aa17.96■□□□□ 0.47
COL17A1-201ENST00000353479 MAPKBP1O60336 1514 aa17.96■□□□□ 0.47
COL17A1-201ENST00000353479 BICD2Q8TD16 824 aa17.96■□□□□ 0.47
COL17A1-201ENST00000353479 SSH1Q8WYL5 1049 aa17.96■□□□□ 0.47
COL17A1-201ENST00000353479 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.95■□□□□ 0.46
COL17A1-201ENST00000353479 IL1RAPL2Q9NP60 686 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 PRAG1Q86YV5 1406 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 KDM4AO75164 1064 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 SAFBQ15424 915 aaKnown RBP eCLIP17.95■□□□□ 0.46
COL17A1-201ENST00000353479 FANCIQ9NVI1 1328 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 CEP170Q5SW79 1584 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 RALGAPBQ86X10 1494 aa17.95■□□□□ 0.46
COL17A1-201ENST00000353479 CHD1LQ86WJ1 897 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 ANKRD36BQ8N2N9 1353 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 BECN2A8MW95 431 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 ANKRD24Q8TF21 1146 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.94■□□□□ 0.46
COL17A1-201ENST00000353479 ZMYM3Q14202 1370 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 RRP12Q5JTH9 1297 aaKnown RBP17.94■□□□□ 0.46
COL17A1-201ENST00000353479 PPIP5K1Q6PFW1 1433 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 SHANK2Q9UPX8 1470 aa17.94■□□□□ 0.46
COL17A1-201ENST00000353479 GOLGA6L19H0YKK7 550 aa17.93■□□□□ 0.46
COL17A1-201ENST00000353479 NEK4P51957 841 aa17.93■□□□□ 0.46
COL17A1-201ENST00000353479 RARSP54136 660 aaKnown RBP17.93■□□□□ 0.46
COL17A1-201ENST00000353479 CEP126Q9P2H0 1117 aa17.93■□□□□ 0.46
COL17A1-201ENST00000353479 EXOC5O00471 708 aa17.93■□□□□ 0.46
COL17A1-201ENST00000353479 NUCB2P80303 420 aa17.93■□□□□ 0.46
COL17A1-201ENST00000353479 SART3Q15020 963 aaKnown RBP17.93■□□□□ 0.46
COL17A1-201ENST00000353479 FKBP4Q02790 459 aaKnown RBP eCLIP17.93■□□□□ 0.46
COL17A1-201ENST00000353479 RPAP2Q8IXW5 612 aaPredicted RBP17.93■□□□□ 0.46
COL17A1-201ENST00000353479 HSPA2P54652 639 aa17.92■□□□□ 0.46
COL17A1-201ENST00000353479 MYD88Q99836 296 aa17.92■□□□□ 0.46
COL17A1-201ENST00000353479 LARP1Q6PKG0 1096 aaKnown RBP17.91■□□□□ 0.46
COL17A1-201ENST00000353479 ALDH1L2Q3SY69 923 aa17.91■□□□□ 0.46
COL17A1-201ENST00000353479 EXOC6BQ9Y2D4 811 aa17.91■□□□□ 0.46
COL17A1-201ENST00000353479 FAM83GA6ND36 823 aa17.91■□□□□ 0.46
COL17A1-201ENST00000353479 F6X3S4 739 aa17.9■□□□□ 0.46
COL17A1-201ENST00000353479 HSP90AB2PQ58FF8 381 aa17.9■□□□□ 0.46
COL17A1-201ENST00000353479 IKQ13123 557 aaPredicted RBP17.9■□□□□ 0.46
COL17A1-201ENST00000353479 STK11IPQ8N1F8 1099 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms