RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 HMGN5P82970 282 aaKnown RBP18.74■□□□□ 0.59
LMNA-201ENST00000347559 USP25Q9UHP3 1055 aa18.74■□□□□ 0.59
LMNA-201ENST00000347559 PRIMPOLQ96LW4 560 aa18.74■□□□□ 0.59
LMNA-201ENST00000347559 GDPD2Q9HCC8 539 aa18.74■□□□□ 0.59
LMNA-201ENST00000347559 CDC42BPBQ9Y5S2 1711 aa18.74■□□□□ 0.59
LMNA-201ENST00000347559 MBD3O95983 291 aa18.74■□□□□ 0.59
LMNA-201ENST00000347559 GTPBP4Q9BZE4 634 aaKnown RBP18.74■□□□□ 0.59
LMNA-201ENST00000347559 ABCC11Q96J66 1382 aa18.73■□□□□ 0.59
LMNA-201ENST00000347559 CD109Q6YHK3 1445 aa18.73■□□□□ 0.59
LMNA-201ENST00000347559 PLEKHM2Q8IWE5 1019 aa18.72■□□□□ 0.59
LMNA-201ENST00000347559 DUOX2Q9NRD8 1548 aa18.72■□□□□ 0.59
LMNA-201ENST00000347559 ARHGAP31Q2M1Z3 1444 aa18.72■□□□□ 0.59
LMNA-201ENST00000347559 PIBF1Q8WXW3 757 aa18.72■□□□□ 0.59
LMNA-201ENST00000347559 BCL2L12Q9HB09 334 aa18.72■□□□□ 0.59
LMNA-201ENST00000347559 INTS3Q68E01 1043 aaKnown RBP18.71■□□□□ 0.59
LMNA-201ENST00000347559 TMEM132EQ6IEE7 984 aa18.71■□□□□ 0.59
LMNA-201ENST00000347559 PDCL2Q8N4E4 241 aa18.71■□□□□ 0.59
LMNA-201ENST00000347559 OTUD7AQ8TE49 926 aaPredicted RBP18.71■□□□□ 0.59
LMNA-201ENST00000347559 PLEKHF1Q96S99 279 aa18.7■□□□□ 0.58
LMNA-201ENST00000347559 ATAD2Q6PL18 1390 aa18.7■□□□□ 0.58
LMNA-201ENST00000347559 KIF20AO95235 890 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 GGNBP2Q9H3C7 697 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 SPHKAPQ2M3C7 1700 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 U2AF2P26368 475 aaKnown RBP eCLIP18.69■□□□□ 0.58
LMNA-201ENST00000347559 TTC22Q5TAA0 569 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 LETM1O95202 739 aaPredicted RBP18.69■□□□□ 0.58
LMNA-201ENST00000347559 NEK4P51957 841 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 ALDH1L2Q3SY69 923 aa18.69■□□□□ 0.58
LMNA-201ENST00000347559 SYAP1Q96A49 352 aaPredicted RBP18.69■□□□□ 0.58
LMNA-201ENST00000347559 THUMPD2Q9BTF0 503 aaKnown RBP18.68■□□□□ 0.58
LMNA-201ENST00000347559 SENP3Q9H4L4 574 aaPredicted RBP18.68■□□□□ 0.58
LMNA-201ENST00000347559 ADCY5O95622 1261 aa18.68■□□□□ 0.58
LMNA-201ENST00000347559 CASC1Q6TDU7 716 aa18.68■□□□□ 0.58
LMNA-201ENST00000347559 PREX2Q70Z35 1606 aa18.68■□□□□ 0.58
LMNA-201ENST00000347559 GADD45BO75293 160 aaPredicted RBP18.67■□□□□ 0.58
LMNA-201ENST00000347559 SAFB2Q14151 953 aaKnown RBP eCLIP18.67■□□□□ 0.58
LMNA-201ENST00000347559 CHMP4BQ9H444 224 aaKnown RBP18.67■□□□□ 0.58
LMNA-201ENST00000347559 MRC2Q9UBG0 1479 aa18.67■□□□□ 0.58
LMNA-201ENST00000347559 SDSP20132 328 aa18.66■□□□□ 0.58
LMNA-201ENST00000347559 TSPYL6Q8N831 410 aa18.66■□□□□ 0.58
LMNA-201ENST00000347559 SMARCA5O60264 1052 aaPredicted RBP18.66■□□□□ 0.58
LMNA-201ENST00000347559 PDE4CQ08493 712 aa18.65■□□□□ 0.58
LMNA-201ENST00000347559 ZNF771Q7L3S4 317 aaPredicted RBP18.65■□□□□ 0.58
LMNA-201ENST00000347559 TMX3Q96JJ7 454 aa18.65■□□□□ 0.58
LMNA-201ENST00000347559 CLTCL1P53675 1640 aa18.65■□□□□ 0.58
LMNA-201ENST00000347559 NCBP3Q53F19 620 aaKnown RBP18.65■□□□□ 0.58
LMNA-201ENST00000347559 GTF2F1P35269 517 aaKnown RBP eCLIP18.65■□□□□ 0.58
LMNA-201ENST00000347559 CGNQ9P2M7 1197 aaKnown RBP18.65■□□□□ 0.58
LMNA-201ENST00000347559 IL16Q14005 1332 aa18.64■□□□□ 0.58
LMNA-201ENST00000347559 HCLS1P14317 486 aaPredicted RBP18.64■□□□□ 0.57
LMNA-201ENST00000347559 GTF2E1P29083 439 aaPredicted RBP18.64■□□□□ 0.57
LMNA-201ENST00000347559 CHAF1AQ13111 956 aaPredicted RBP18.64■□□□□ 0.57
LMNA-201ENST00000347559 CABP2Q9NPB3 220 aa18.63■□□□□ 0.57
LMNA-201ENST00000347559 TRPM2O94759 1503 aa18.63■□□□□ 0.57
LMNA-201ENST00000347559 RIOK3O14730 519 aaKnown RBP18.63■□□□□ 0.57
LMNA-201ENST00000347559 AFAP1Q8N556 730 aa18.63■□□□□ 0.57
LMNA-201ENST00000347559 MRPL50Q8N5N7 158 aaKnown RBP18.63■□□□□ 0.57
LMNA-201ENST00000347559 PHF14O94880 888 aa18.63■□□□□ 0.57
LMNA-201ENST00000347559 FKBP5Q13451 457 aaPredicted RBP18.63■□□□□ 0.57
LMNA-201ENST00000347559 REC8O95072 547 aa18.62■□□□□ 0.57
LMNA-201ENST00000347559 CFAP44Q96MT7 982 aa18.62■□□□□ 0.57
LMNA-201ENST00000347559 BCL11BQ9C0K0 894 aaPredicted RBP18.62■□□□□ 0.57
LMNA-201ENST00000347559 KIF3BO15066 747 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 SPC24Q8NBT2 197 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 SPAG9O60271 1321 aaKnown RBP18.61■□□□□ 0.57
LMNA-201ENST00000347559 VAMP4O75379 141 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 BRD1O95696 1058 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 USP48Q86UV5 1035 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 ERCC6Q03468 1493 aa18.61■□□□□ 0.57
LMNA-201ENST00000347559 UGGT1Q9NYU2 1555 aa18.6■□□□□ 0.57
LMNA-201ENST00000347559 ADGRL1O94910 1474 aa18.6■□□□□ 0.57
LMNA-201ENST00000347559 ZBTB22O15209 634 aa18.6■□□□□ 0.57
LMNA-201ENST00000347559 ADGRB2O60241 1585 aa18.59■□□□□ 0.57
LMNA-201ENST00000347559 VGLL3A8MV65 326 aa18.59■□□□□ 0.57
LMNA-201ENST00000347559 DCTPP1Q9H773 170 aa18.59■□□□□ 0.57
LMNA-201ENST00000347559 DIAPH3Q9NSV4 1193 aa18.59■□□□□ 0.57
LMNA-201ENST00000347559 ERC2O15083 957 aa18.58■□□□□ 0.57
LMNA-201ENST00000347559 DIAPH1O60610 1272 aaKnown RBP18.58■□□□□ 0.57
LMNA-201ENST00000347559 NUTM2DQ5VT03 806 aaPredicted RBP18.58■□□□□ 0.57
LMNA-201ENST00000347559 ABCA6Q8N139 1617 aa18.58■□□□□ 0.57
LMNA-201ENST00000347559 PRKAR2BP31323 418 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 FAM184AQ8NB25 1140 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 PYCARDQ9ULZ3 195 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 EFCAB2Q5VUJ9 269 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 SBNO2Q9Y2G9 1366 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 MED14O60244 1454 aa18.58■□□□□ 0.56
LMNA-201ENST00000347559 SPTLC3Q9NUV7 552 aa18.57■□□□□ 0.56
LMNA-201ENST00000347559 UVSSAQ2YD98 709 aa18.56■□□□□ 0.56
LMNA-201ENST00000347559 TRAPPC8Q9Y2L5 1435 aa18.56■□□□□ 0.56
LMNA-201ENST00000347559 HMOX1P09601 288 aa18.56■□□□□ 0.56
LMNA-201ENST00000347559 ARHGAP45Q92619 1136 aa18.56■□□□□ 0.56
LMNA-201ENST00000347559 UPF3BQ9BZI7 483 aaKnown RBP18.56■□□□□ 0.56
LMNA-201ENST00000347559 FBLN1P23142 703 aa18.54■□□□□ 0.56
LMNA-201ENST00000347559 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
LMNA-201ENST00000347559 TWISTNBQ3B726 338 aaPredicted RBP18.54■□□□□ 0.56
LMNA-201ENST00000347559 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.54■□□□□ 0.567e-7■■□□□ 11.7
LMNA-201ENST00000347559 ABCC4O15439 1325 aa18.54■□□□□ 0.56
LMNA-201ENST00000347559 TSHZ3Q63HK5 1081 aa18.54■□□□□ 0.56
LMNA-201ENST00000347559 TMEM51Q9NW97 253 aa18.54■□□□□ 0.56
LMNA-201ENST00000347559 EVC2Q86UK5 1308 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms