RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 USP21Q9UK80 565 aa16.15■□□□□ 0.18
SNCA-202ENST00000345009 AFF2P51816 1311 aa16.15■□□□□ 0.18
SNCA-202ENST00000345009 KIAA0232Q92628 1395 aa16.14■□□□□ 0.17
SNCA-202ENST00000345009 NRKQ7Z2Y5 1582 aa16.14■□□□□ 0.17
SNCA-202ENST00000345009 ZBTB7CA1YPR0 619 aa16.14■□□□□ 0.17
SNCA-202ENST00000345009 SPDYE1Q8NFV5 336 aaPredicted RBP16.14■□□□□ 0.17
SNCA-202ENST00000345009 PIK3C2AO00443 1686 aa16.13■□□□□ 0.17
SNCA-202ENST00000345009 PER1O15534 1290 aaPredicted RBP16.12■□□□□ 0.17
SNCA-202ENST00000345009 EVA1CP58658 441 aa16.12■□□□□ 0.17
SNCA-202ENST00000345009 MORC1Q86VD1 984 aa16.12■□□□□ 0.17
SNCA-202ENST00000345009 ARHGEF25Q86VW2 580 aa16.12■□□□□ 0.17
SNCA-202ENST00000345009 UNC5CLQ8IV45 518 aa16.12■□□□□ 0.17
SNCA-202ENST00000345009 BTG4Q9NY30 223 aa16.12■□□□□ 0.17
SNCA-202ENST00000345009 OVOS2A0A0J9YW53 1432 aa16.11■□□□□ 0.17
SNCA-202ENST00000345009 OVOS2Q6IE36 1432 aa16.11■□□□□ 0.17
SNCA-202ENST00000345009 DDX10Q13206 875 aaKnown RBP16.11■□□□□ 0.17
SNCA-202ENST00000345009 CHRNA2Q15822 529 aa16.11■□□□□ 0.17
SNCA-202ENST00000345009 TRPC5Q9UL62 973 aaPredicted RBP16.11■□□□□ 0.17
SNCA-202ENST00000345009 AATKQ6ZMQ8 1374 aa16.11■□□□□ 0.17
SNCA-202ENST00000345009 SLIT3O75094 1523 aa16.1■□□□□ 0.17
SNCA-202ENST00000345009 AMPHP49418 695 aa16.1■□□□□ 0.17
SNCA-202ENST00000345009 AMER1Q5JTC6 1135 aaPredicted RBP16.1■□□□□ 0.17
SNCA-202ENST00000345009 QTRT2Q9H974 415 aaKnown RBP16.1■□□□□ 0.17
SNCA-202ENST00000345009 FKBP8Q14318 412 aa16.08■□□□□ 0.16
SNCA-202ENST00000345009 NPC1L1Q9UHC9 1359 aa16.08■□□□□ 0.16
SNCA-202ENST00000345009 TNNT2P45379 298 aaPredicted RBP16.07■□□□□ 0.16
SNCA-202ENST00000345009 CC2D1BQ5T0F9 858 aaKnown RBP16.07■□□□□ 0.16
SNCA-202ENST00000345009 STRN4Q9NRL3 753 aa16.07■□□□□ 0.16
SNCA-202ENST00000345009 CCDC9Q9Y3X0 531 aaKnown RBP16.07■□□□□ 0.16
SNCA-202ENST00000345009 PHRF1Q9P1Y6 1649 aaKnown RBP16.07■□□□□ 0.16
SNCA-202ENST00000345009 COL14A1Q05707 1796 aaKnown RBP16.06■□□□□ 0.16
SNCA-202ENST00000345009 ABCA3Q99758 1704 aa16.06■□□□□ 0.16
SNCA-202ENST00000345009 MARF1Q9Y4F3 1742 aaKnown RBP16.06■□□□□ 0.16
SNCA-202ENST00000345009 USP54Q70EL1 1684 aa16.06■□□□□ 0.16
SNCA-202ENST00000345009 SLIT2O94813 1529 aa16.06■□□□□ 0.16
SNCA-202ENST00000345009 IP6K1Q92551 441 aa16.06■□□□□ 0.16
SNCA-202ENST00000345009 KIF20BQ96Q89 1820 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 CRYBG1Q9Y4K1 1723 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 MAP3K19Q56UN5 1328 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 CSB-PGBD3P0DP91 1061 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 RXRBP28702 533 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 VPS72Q15906 364 aa16.05■□□□□ 0.16
SNCA-202ENST00000345009 RGS17Q9UGC6 210 aaPredicted RBP16.05■□□□□ 0.16
SNCA-202ENST00000345009 NFAT5O94916 1531 aa16.04■□□□□ 0.16
SNCA-202ENST00000345009 BCL9LQ86UU0 1499 aa16.04■□□□□ 0.16
SNCA-202ENST00000345009 KIF24Q5T7B8 1368 aa16.04■□□□□ 0.16
SNCA-202ENST00000345009 PPM1GO15355 546 aaPredicted RBP16.04■□□□□ 0.16
SNCA-202ENST00000345009 RBM6P78332 1123 aaKnown RBP16.04■□□□□ 0.16
SNCA-202ENST00000345009 CNGB1Q14028 1251 aaPredicted RBP16.04■□□□□ 0.16
SNCA-202ENST00000345009 RRS1Q15050 365 aaKnown RBP16.04■□□□□ 0.16
SNCA-202ENST00000345009 GJD4Q96KN9 370 aaPredicted RBP16.03■□□□□ 0.16
SNCA-202ENST00000345009 RTL1A6NKG5 1358 aa16.02■□□□□ 0.16
SNCA-202ENST00000345009 FBLN1P23142 703 aa16.02■□□□□ 0.16
SNCA-202ENST00000345009 HOXC9P31274 260 aa16.02■□□□□ 0.16
SNCA-202ENST00000345009 POTEAQ6S8J7 498 aa16.02■□□□□ 0.16
SNCA-202ENST00000345009 AXIN2Q9Y2T1 843 aa16.02■□□□□ 0.16
SNCA-202ENST00000345009 ABCC6O95255 1503 aa16.01■□□□□ 0.15
SNCA-202ENST00000345009 TOM1L2Q6ZVM7 507 aa16.01■□□□□ 0.15
SNCA-202ENST00000345009 POLKQ9UBT6 870 aa16.01■□□□□ 0.15
SNCA-202ENST00000345009 NWD2Q9ULI1 1742 aa16.01■□□□□ 0.15
SNCA-202ENST00000345009 BLMP54132 1417 aaPredicted RBP16.01■□□□□ 0.15
SNCA-202ENST00000345009 FLT4P35916 1363 aa16■□□□□ 0.15
SNCA-202ENST00000345009 WDR17Q8IZU2 1322 aa16■□□□□ 0.15
SNCA-202ENST00000345009 ANKRD24Q8TF21 1146 aa16■□□□□ 0.15
SNCA-202ENST00000345009 ATRNO75882 1429 aa16■□□□□ 0.15
SNCA-202ENST00000345009 CAMTA1Q9Y6Y1 1673 aa15.99■□□□□ 0.15
SNCA-202ENST00000345009 LARP1Q6PKG0 1096 aaKnown RBP15.99■□□□□ 0.15
SNCA-202ENST00000345009 THRAP3Q9Y2W1 955 aaKnown RBP15.99■□□□□ 0.15
SNCA-202ENST00000345009 EMILIN1Q9Y6C2 1016 aa15.99■□□□□ 0.15
SNCA-202ENST00000345009 SMG6Q86US8 1419 aaKnown RBP15.99■□□□□ 0.15
SNCA-202ENST00000345009 SPATA31A5Q5VU36 1347 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 SPATA31A7Q8IWB4 1347 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 RALBP1Q15311 655 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 HSP90AB2PQ58FF8 381 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 TCP11L2Q8N4U5 519 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 LTV1Q96GA3 475 aaPredicted RBP15.98■□□□□ 0.15
SNCA-202ENST00000345009 NLRP2Q9NX02 1062 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 USP35Q9P2H5 1018 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 PLCH1Q4KWH8 1693 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 INSRP06213 1382 aa15.98■□□□□ 0.15
SNCA-202ENST00000345009 COL5A2P05997 1499 aaPredicted RBP15.97■□□□□ 0.15
SNCA-202ENST00000345009 ERBB3P21860 1342 aa15.97■□□□□ 0.15
SNCA-202ENST00000345009 CARD10Q9BWT7 1032 aa15.97■□□□□ 0.15
SNCA-202ENST00000345009 ANKRD26Q9UPS8 1709 aa15.97■□□□□ 0.15
SNCA-202ENST00000345009 SPATA31A1Q5TZJ5 1347 aa15.96■□□□□ 0.15
SNCA-202ENST00000345009 CRB1P82279 1406 aa15.96■□□□□ 0.15
SNCA-202ENST00000345009 A0A0G2JS52 829 aa15.96■□□□□ 0.15
SNCA-202ENST00000345009 MTHFSP49914 203 aa15.96■□□□□ 0.15
SNCA-202ENST00000345009 MYT1Q01538 1121 aa15.96■□□□□ 0.15
SNCA-202ENST00000345009 CDCA7Q9BWT1 371 aaPredicted RBP15.96■□□□□ 0.15
SNCA-202ENST00000345009 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.96■□□□□ 0.15
SNCA-202ENST00000345009 LTN1O94822 1766 aa15.95■□□□□ 0.14
SNCA-202ENST00000345009 PRR29P0C7W0 189 aa15.95■□□□□ 0.14
SNCA-202ENST00000345009 BARGINQ6ZT62 677 aa15.95■□□□□ 0.14
SNCA-202ENST00000345009 CFAP53Q96M91 514 aa15.95■□□□□ 0.14
SNCA-202ENST00000345009 LMO7Q8WWI1 1683 aa15.95■□□□□ 0.14
SNCA-202ENST00000345009 ONECUT3O60422 494 aaPredicted RBP15.94■□□□□ 0.14
SNCA-202ENST00000345009 COL18A1P39060 1754 aa15.94■□□□□ 0.14
SNCA-202ENST00000345009 MAP2P11137 1827 aaKnown RBP15.94■□□□□ 0.14
SNCA-202ENST00000345009 FAM98CQ17RN3 349 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms