RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 CCDC172P0C7W6 258 aa11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 KIAA1524Q8TCG1 905 aa11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 KIF16BQ96L93 1317 aa11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 NKTRP30414 1462 aaKnown RBP11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 FBXO38Q6PIJ6 1188 aa11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 SCAPERQ9BY12 1400 aa11.69□□□□□ -0.54
PTCHD4-201ENST00000339488 HCLS1P14317 486 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 CASQ1P31415 396 aa11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 PDE3AQ14432 1141 aa11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 RWDD1Q9H446 243 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 PER1O15534 1290 aaPredicted RBP11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 CLEC17AQ6ZS10 378 aa11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 RNF217Q8TC41 542 aa11.68□□□□□ -0.54
PTCHD4-201ENST00000339488 U2SURPO15042 1029 aaKnown RBP11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 GUCY2CP25092 1073 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 HOMEZQ8IX15 550 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 ARID3CA6NKF2 412 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 ELF2Q15723 593 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 NEUROD2Q15784 382 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 CCDC191Q8NCU4 936 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 LNPKQ9C0E8 428 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 ZDHHC9Q9Y397 364 aa11.67□□□□□ -0.54
PTCHD4-201ENST00000339488 AP5Z1O43299 807 aa11.66□□□□□ -0.54
PTCHD4-201ENST00000339488 HSP90B1P14625 803 aaKnown RBP11.66□□□□□ -0.54
PTCHD4-201ENST00000339488 ST5P78524 1137 aa11.66□□□□□ -0.54
PTCHD4-201ENST00000339488 GRIPAP1Q4V328 841 aa11.66□□□□□ -0.54
PTCHD4-201ENST00000339488 SMARCA5O60264 1052 aaPredicted RBP11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 LRMPQ12912 555 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 SEMA3FQ13275 785 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 EXOC6BQ9Y2D4 811 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 JRKLQ9Y4A0 524 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 CAMSAP2Q08AD1 1489 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 ANKRD65E5RJM6 399 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 GOLIM4O00461 696 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 BMS1Q14692 1282 aaKnown RBP11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 NPC1L1Q9UHC9 1359 aa11.65□□□□□ -0.54
PTCHD4-201ENST00000339488 GADD45BO75293 160 aaPredicted RBP11.65□□□□□ -0.55
PTCHD4-201ENST00000339488 PTGS1P23219 599 aa11.65□□□□□ -0.55
PTCHD4-201ENST00000339488 SLC26A8Q96RN1 970 aa11.65□□□□□ -0.55
PTCHD4-201ENST00000339488 ZNF215Q9UL58 517 aaPredicted RBP11.65□□□□□ -0.55
PTCHD4-201ENST00000339488 PLB1Q6P1J6 1458 aa11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 PACS2Q86VP3 889 aa11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 IFT57Q9NWB7 429 aa11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 CYP2E1P05181 493 aaPredicted RBP11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 CCDC112Q8NEF3 446 aa11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 ZNF397Q8NF99 534 aaPredicted RBP11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 LRRFIP2Q9Y608 721 aaKnown RBP11.64□□□□□ -0.55
PTCHD4-201ENST00000339488 CARMIL2Q6F5E8 1435 aa11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 TRMT2AQ8IZ69 625 aaKnown RBP11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 SGSM3Q96HU1 749 aa11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 SUFUQ9UMX1 484 aa11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 RRP7AQ9Y3A4 280 aaKnown RBP11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 CASKIN1Q8WXD9 1431 aa11.63□□□□□ -0.55
PTCHD4-201ENST00000339488 NUCB2P80303 420 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 SMARCE1Q969G3 411 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 FYCO1Q9BQS8 1478 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 LRRIQ1Q96JM4 1722 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 SMTNL1A8MU46 457 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 CXorf56Q9H5V9 222 aa11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 ZCCHC17Q9NP64 241 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-201ENST00000339488 GOLGA6L6A8MZA4 724 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 TDO2P48775 406 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 SATB1Q01826 763 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 ATG3Q9NT62 314 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 ARHGEF11O15085 1522 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 REC8O95072 547 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 CDCA8Q53HL2 280 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 FAM135AQ9P2D6 1515 aa11.61□□□□□ -0.55
PTCHD4-201ENST00000339488 E9PCH4 1651 aa11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 ZSCAN26Q16670 478 aa11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 NOL8Q76FK4 1167 aaKnown RBP11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 KIF1BPQ96EK5 621 aa11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 RRP15Q9Y3B9 282 aaKnown RBP11.6□□□□□ -0.55
PTCHD4-201ENST00000339488 PTPRGP23470 1445 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 KIAA1107Q9UPP5 1409 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 PPP2R1AP30153 589 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 RARSP54136 660 aaKnown RBP11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 PPP2R5AQ15172 486 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 TBC1D9Q6ZT07 1266 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 FAM53CQ9NYF3 392 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 SH3BP1Q9Y3L3 701 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 ARHGAP31Q2M1Z3 1444 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 MBD5Q9P267 1494 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 TTLL5Q6EMB2 1281 aa11.59□□□□□ -0.55
PTCHD4-201ENST00000339488 TTC31Q49AM3 519 aaPredicted RBP11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 LRRN4CLQ8ND94 238 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 CALR3Q96L12 384 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 NRBP1Q9UHY1 535 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 ZMYM3Q14202 1370 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 CDK13Q14004 1512 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 SRLQ86TD4 932 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 DONSONQ9NYP3 566 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 ERBB3P21860 1342 aa11.58□□□□□ -0.56
PTCHD4-201ENST00000339488 KDM4AO75164 1064 aa11.57□□□□□ -0.56
PTCHD4-201ENST00000339488 PHF14O94880 888 aa11.57□□□□□ -0.56
PTCHD4-201ENST00000339488 PLA2G4AP47712 749 aa11.57□□□□□ -0.56
PTCHD4-201ENST00000339488 PRPF38AQ8NAV1 312 aaKnown RBP11.57□□□□□ -0.56
PTCHD4-201ENST00000339488 NUP153P49790 1475 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms