RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CT47B1P0C2W7 299 aaPredicted RBP14.98□□□□□ -0.01
SDC3-201ENST00000336798 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.98□□□□□ -0.01
SDC3-201ENST00000336798 GNAI2P04899 355 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 SOGA3Q5TF21 947 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 CCDC181Q5TID7 509 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 GAS2L2Q8NHY3 880 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 MPHOSPH8Q99549 860 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 ZNHIT6Q9NWK9 470 aaKnown RBP14.97□□□□□ -0.01
SDC3-201ENST00000336798 HDGFL1Q5TGJ6 251 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 SSR1P43307 286 aaKnown RBP14.97□□□□□ -0.01
SDC3-201ENST00000336798 KIF7Q2M1P5 1343 aa14.97□□□□□ -0.01
SDC3-201ENST00000336798 CWC15Q9P013 229 aaKnown RBP14.96□□□□□ -0.01
SDC3-201ENST00000336798 PPM1FP49593 454 aaPredicted RBP14.96□□□□□ -0.01
SDC3-201ENST00000336798 PRAM1Q96QH2 718 aa14.96□□□□□ -0.01
SDC3-201ENST00000336798 SULT6B1Q6IMI4 303 aa14.96□□□□□ -0.02
SDC3-201ENST00000336798 MYCNP04198 464 aaPredicted RBP14.95□□□□□ -0.02
SDC3-201ENST00000336798 ZNF76P36508 570 aa14.95□□□□□ -0.02
SDC3-201ENST00000336798 PPFIBP1Q86W92 1011 aa14.95□□□□□ -0.02
SDC3-201ENST00000336798 NEBLO76041 1014 aa14.95□□□□□ -0.02
SDC3-201ENST00000336798 SMG6Q86US8 1419 aaKnown RBP14.95□□□□□ -0.02
SDC3-201ENST00000336798 CFAP70Q5T0N1 1121 aa14.95□□□□□ -0.02
SDC3-201ENST00000336798 RAI14Q9P0K7 980 aa14.95□□□□□ -0.02
SDC3-201ENST00000336798 ERLIN2O94905 339 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 TRIM22Q8IYM9 498 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 CYP46A1Q9Y6A2 500 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 BCAR3O75815 825 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 TDO2P48775 406 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 CCDC57Q2TAC2 916 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 NACAP1Q9BZK3 213 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 TNMDQ9H2S6 317 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 PRDM10Q9NQV6 1147 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 HIP1O00291 1037 aa14.94□□□□□ -0.02
SDC3-201ENST00000336798 LETM1O95202 739 aaPredicted RBP14.94□□□□□ -0.02
SDC3-201ENST00000336798 CNTLNQ9NXG0 1405 aa14.93□□□□□ -0.02
SDC3-201ENST00000336798 MRE11P49959 708 aa14.93□□□□□ -0.02
SDC3-201ENST00000336798 AACSQ86V21 672 aa14.93□□□□□ -0.02
SDC3-201ENST00000336798 ERC1Q8IUD2 1116 aa14.93□□□□□ -0.02
SDC3-201ENST00000336798 GOLGA6L10A6NI86 522 aa14.93□□□□□ -0.02
SDC3-201ENST00000336798 ZNF530Q6P9A1 599 aaPredicted RBP14.92□□□□□ -0.02
SDC3-201ENST00000336798 ZRSR2Q15696 482 aaKnown RBP14.92□□□□□ -0.02
SDC3-201ENST00000336798 CWC27Q6UX04 472 aaKnown RBP14.92□□□□□ -0.02
SDC3-201ENST00000336798 STIM1Q13586 685 aa14.92□□□□□ -0.02
SDC3-201ENST00000336798 BBXQ8WY36 941 aaPredicted RBP14.92□□□□□ -0.02
SDC3-201ENST00000336798 LEKR1Q6ZMV7 388 aa14.92□□□□□ -0.02
SDC3-201ENST00000336798 LRRCC1Q9C099 1032 aa14.92□□□□□ -0.02
SDC3-201ENST00000336798 TAF3Q5VWG9 929 aa14.91□□□□□ -0.02
SDC3-201ENST00000336798 WIZO95785 1651 aa14.91□□□□□ -0.02
SDC3-201ENST00000336798 IL1RAPL2Q9NP60 686 aa14.91□□□□□ -0.02
SDC3-201ENST00000336798 LRRFIP2Q9Y608 721 aaKnown RBP14.9□□□□□ -0.02
SDC3-201ENST00000336798 PDCP20941 246 aa14.9□□□□□ -0.02
SDC3-201ENST00000336798 CCDC7Q96M83 1385 aa14.9□□□□□ -0.02
SDC3-201ENST00000336798 DHX8Q14562 1220 aaKnown RBP14.9□□□□□ -0.02
SDC3-201ENST00000336798 LRP2BPQ9P2M1 347 aa14.9□□□□□ -0.02
SDC3-201ENST00000336798 RRS1Q15050 365 aaKnown RBP14.9□□□□□ -0.02
SDC3-201ENST00000336798 LARP1BQ659C4 914 aaKnown RBP14.9□□□□□ -0.02
SDC3-201ENST00000336798 ZNF219Q9P2Y4 722 aaPredicted RBP14.89□□□□□ -0.03
SDC3-201ENST00000336798 IDH1O75874 414 aaKnown RBP14.89□□□□□ -0.03
SDC3-201ENST00000336798 CDK19Q9BWU1 502 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 DDX11Q96FC9 970 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 UBAC1Q9BSL1 405 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 ABCF2Q9UG63 623 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 PPP2R1AP30153 589 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 PIP4K2AP48426 406 aaPredicted RBP14.89□□□□□ -0.03
SDC3-201ENST00000336798 JMYQ8N9B5 988 aa14.89□□□□□ -0.03
SDC3-201ENST00000336798 CABP1Q9NZU7 370 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 SCLT1Q96NL6 688 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 MIS18AQ9NYP9 233 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 BTBD11A6QL63 1104 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 CCP110O43303 1012 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 JAKMIP1Q96N16 626 aaKnown RBP14.88□□□□□ -0.03
SDC3-201ENST00000336798 PAXIP1Q6ZW49 1069 aaPredicted RBP14.88□□□□□ -0.03
SDC3-201ENST00000336798 ANKRD18AQ8IVF6 992 aa14.88□□□□□ -0.03
SDC3-201ENST00000336798 NOL7Q9UMY1 257 aaKnown RBP14.88□□□□□ -0.03
SDC3-201ENST00000336798 MBD3O95983 291 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 SRCIN1Q9C0H9 1055 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 RABEP1Q15276 862 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 CCDC192P0DO97 292 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 NUTM1Q86Y26 1132 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 SPG7Q9UQ90 795 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 TRMT1LQ7Z2T5 733 aaKnown RBP14.87□□□□□ -0.03
SDC3-201ENST00000336798 AFAP1Q8N556 730 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 SLC12A5Q9H2X9 1139 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 RUSC2Q8N2Y8 1516 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 CADPSQ9ULU8 1353 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 SRGAP3O43295 1099 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 PDRG1Q9NUG6 133 aa14.87□□□□□ -0.03
SDC3-201ENST00000336798 ZC3H6P61129 1189 aaKnown RBP14.86□□□□□ -0.03
SDC3-201ENST00000336798 CAMK4Q16566 473 aa14.86□□□□□ -0.03
SDC3-201ENST00000336798 DACH1Q9UI36 760 aa14.86□□□□□ -0.03
SDC3-201ENST00000336798 SPATA32Q96LK8 384 aa14.86□□□□□ -0.03
SDC3-201ENST00000336798 PDIA4P13667 645 aaKnown RBP14.86□□□□□ -0.03
SDC3-201ENST00000336798 ZHX1Q9UKY1 873 aaPredicted RBP14.85□□□□□ -0.03
SDC3-201ENST00000336798 WDR78Q5VTH9 848 aa14.85□□□□□ -0.03
SDC3-201ENST00000336798 LIG1P18858 919 aa14.85□□□□□ -0.03
SDC3-201ENST00000336798 GBP2P32456 591 aaPredicted RBP14.85□□□□□ -0.03
SDC3-201ENST00000336798 GCC1Q96CN9 775 aa14.85□□□□□ -0.03
SDC3-201ENST00000336798 LUC7LQ9NQ29 371 aaKnown RBP14.85□□□□□ -0.03
SDC3-201ENST00000336798 BMP2KQ9NSY1 1161 aaPredicted RBP14.85□□□□□ -0.03
SDC3-201ENST00000336798 KIAA0754O94854 1291 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 CEP57L1Q8IYX8 460 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms