RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 ARHGAP45Q92619 1136 aa16.74■□□□□ 0.27
SKA3-202ENST00000314759 FAM135BQ49AJ0 1406 aa16.74■□□□□ 0.27
SKA3-202ENST00000314759 K7ELQ4 463 aaPredicted RBP16.74■□□□□ 0.27
SKA3-202ENST00000314759 CABP1Q9NZU7 370 aa16.74■□□□□ 0.27
SKA3-202ENST00000314759 PIK3R4Q99570 1358 aa16.74■□□□□ 0.27
SKA3-202ENST00000314759 TRIM44Q96DX7 344 aaPredicted RBP16.73■□□□□ 0.27
SKA3-202ENST00000314759 SKOR2Q2VWA4 1001 aaPredicted RBP16.73■□□□□ 0.27
SKA3-202ENST00000314759 POLKQ9UBT6 870 aa16.73■□□□□ 0.27
SKA3-202ENST00000314759 CDK19Q9BWU1 502 aa16.73■□□□□ 0.27
SKA3-202ENST00000314759 PTCH1Q13635 1447 aa16.72■□□□□ 0.27
SKA3-202ENST00000314759 ELL2O00472 640 aaPredicted RBP16.72■□□□□ 0.27
SKA3-202ENST00000314759 CHMP4BQ9H444 224 aaKnown RBP16.72■□□□□ 0.27
SKA3-202ENST00000314759 RAPGEF3O95398 923 aa16.72■□□□□ 0.27
SKA3-202ENST00000314759 HMOX1P09601 288 aa16.72■□□□□ 0.27
SKA3-202ENST00000314759 NFE2L2Q16236 605 aa16.72■□□□□ 0.27
SKA3-202ENST00000314759 CDC42BPGQ6DT37 1551 aa16.72■□□□□ 0.27
SKA3-202ENST00000314759 GAS2L2Q8NHY3 880 aa16.71■□□□□ 0.27
SKA3-202ENST00000314759 SLC52A1Q9NWF4 448 aa16.71■□□□□ 0.27
SKA3-202ENST00000314759 YTHDC2Q9H6S0 1430 aaKnown RBP16.71■□□□□ 0.27
SKA3-202ENST00000314759 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.71■□□□□ 0.27
SKA3-202ENST00000314759 ABCC4O15439 1325 aa16.7■□□□□ 0.26
SKA3-202ENST00000314759 ARHGAP31Q2M1Z3 1444 aa16.7■□□□□ 0.26
SKA3-202ENST00000314759 SSFA2P28290 1259 aa16.7■□□□□ 0.26
SKA3-202ENST00000314759 CLTCQ00610 1675 aaKnown RBP16.7■□□□□ 0.26
SKA3-202ENST00000314759 PTMSP20962 102 aa16.69■□□□□ 0.26
SKA3-202ENST00000314759 MBIPQ9NS73 344 aa16.69■□□□□ 0.26
SKA3-202ENST00000314759 NPM1P06748 294 aaKnown RBP eCLIP16.69■□□□□ 0.26
SKA3-202ENST00000314759 IFT57Q9NWB7 429 aa16.69■□□□□ 0.26
SKA3-202ENST00000314759 ZNF853P0CG23 659 aa16.68■□□□□ 0.26
SKA3-202ENST00000314759 GNAI1P63096 354 aa16.68■□□□□ 0.26
SKA3-202ENST00000314759 ARHGEF40Q8TER5 1519 aa16.68■□□□□ 0.26
SKA3-202ENST00000314759 CDC45O75419 566 aa16.68■□□□□ 0.26
SKA3-202ENST00000314759 GSPT1P15170 499 aaKnown RBP16.68■□□□□ 0.26
SKA3-202ENST00000314759 CALD1Q05682 793 aaKnown RBP16.68■□□□□ 0.26
SKA3-202ENST00000314759 CLEC17AQ6ZS10 378 aa16.67■□□□□ 0.26
SKA3-202ENST00000314759 MYO5BQ9ULV0 1848 aa16.67■□□□□ 0.26
SKA3-202ENST00000314759 TWISTNBQ3B726 338 aaPredicted RBP16.66■□□□□ 0.26
SKA3-202ENST00000314759 KIF20BQ96Q89 1820 aa16.66■□□□□ 0.26
SKA3-202ENST00000314759 PLEKHM2Q8IWE5 1019 aa16.66■□□□□ 0.26
SKA3-202ENST00000314759 C8orf58Q8NAV2 365 aa16.66■□□□□ 0.26
SKA3-202ENST00000314759 EMILIN1Q9Y6C2 1016 aa16.65■□□□□ 0.26
SKA3-202ENST00000314759 KIAA1211Q6ZU35 1233 aa16.65■□□□□ 0.26
SKA3-202ENST00000314759 BAG4O95429 457 aaKnown RBP16.64■□□□□ 0.25
SKA3-202ENST00000314759 IL13P35225 146 aa16.64■□□□□ 0.25
SKA3-202ENST00000314759 TMEM131LA2VDJ0 1609 aa16.64■□□□□ 0.25
SKA3-202ENST00000314759 GOLGA6L22H0YM25 854 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 TPM2P07951 284 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 KLHL40Q2TBA0 621 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 CFAP44Q96MT7 982 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 DIP2CQ9Y2E4 1556 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 API5Q9BZZ5 524 aaKnown RBP16.63■□□□□ 0.25
SKA3-202ENST00000314759 DCTPP1Q9H773 170 aa16.63■□□□□ 0.25
SKA3-202ENST00000314759 DDX49Q9Y6V7 483 aaKnown RBP16.63■□□□□ 0.25
SKA3-202ENST00000314759 C16orf71Q8IYS4 520 aaPredicted RBP16.62■□□□□ 0.25
SKA3-202ENST00000314759 REREQ9P2R6 1566 aa16.62■□□□□ 0.25
SKA3-202ENST00000314759 MAP2P11137 1827 aaKnown RBP16.62■□□□□ 0.25
SKA3-202ENST00000314759 RABEP1Q15276 862 aa16.62■□□□□ 0.25
SKA3-202ENST00000314759 FAM83GA6ND36 823 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 NASPP49321 788 aaPredicted RBP16.61■□□□□ 0.25
SKA3-202ENST00000314759 TTC22Q5TAA0 569 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 WAPLQ7Z5K2 1190 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 ALKQ9UM73 1620 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 PPP1R9BQ96SB3 815 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 USP26Q9BXU7 913 aa16.61■□□□□ 0.25
SKA3-202ENST00000314759 CCDC173Q0VFZ6 552 aa16.6■□□□□ 0.25
SKA3-202ENST00000314759 IBTKQ9P2D0 1353 aaPredicted RBP16.6■□□□□ 0.25
SKA3-202ENST00000314759 FBXO31Q5XUX0 539 aaPredicted RBP16.6■□□□□ 0.25
SKA3-202ENST00000314759 KNDC1Q76NI1 1749 aa16.6■□□□□ 0.25
SKA3-202ENST00000314759 AK9Q5TCS8 1911 aa16.6■□□□□ 0.25
SKA3-202ENST00000314759 PDCL3Q9H2J4 239 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 DCTN1Q14203 1278 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 YEATS2Q9ULM3 1422 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 ATP7BP35670 1465 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 ZSCAN30Q86W11 494 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 NME9Q86XW9 330 aa16.59■□□□□ 0.25
SKA3-202ENST00000314759 OTUD7AQ8TE49 926 aaPredicted RBP16.59■□□□□ 0.25
SKA3-202ENST00000314759 KIF24Q5T7B8 1368 aa16.58■□□□□ 0.25
SKA3-202ENST00000314759 RBM10P98175 930 aaKnown RBP16.58■□□□□ 0.24
SKA3-202ENST00000314759 MCTP1Q6DN14 999 aa16.58■□□□□ 0.24
SKA3-202ENST00000314759 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.24
SKA3-202ENST00000314759 LMOD3Q0VAK6 560 aa16.58■□□□□ 0.24
SKA3-202ENST00000314759 PKP1Q13835 747 aa16.58■□□□□ 0.24
SKA3-202ENST00000314759 PREX1Q8TCU6 1659 aa16.58■□□□□ 0.24
SKA3-202ENST00000314759 INTS3Q68E01 1043 aaKnown RBP16.57■□□□□ 0.24
SKA3-202ENST00000314759 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
SKA3-202ENST00000314759 RIMS2Q9UQ26 1411 aa16.57■□□□□ 0.24
SKA3-202ENST00000314759 NEO1Q92859 1461 aa16.57■□□□□ 0.24
SKA3-202ENST00000314759 NUCB2P80303 420 aa16.57■□□□□ 0.24
SKA3-202ENST00000314759 OFD1O75665 1012 aa16.56■□□□□ 0.24
SKA3-202ENST00000314759 ANKRD44Q8N8A2 993 aa16.56■□□□□ 0.24
SKA3-202ENST00000314759 LMBRD1Q9NUN5 540 aa16.56■□□□□ 0.24
SKA3-202ENST00000314759 CDK12Q9NYV4 1490 aaPredicted RBP16.56■□□□□ 0.24
SKA3-202ENST00000314759 ATP10DQ9P241 1426 aa16.56■□□□□ 0.24
SKA3-202ENST00000314759 ZNF445P59923 1031 aa16.56■□□□□ 0.24
SKA3-202ENST00000314759 DLG5Q8TDM6 1919 aa16.55■□□□□ 0.24
SKA3-202ENST00000314759 SDSP20132 328 aa16.55■□□□□ 0.24
SKA3-202ENST00000314759 RRS1Q15050 365 aaKnown RBP16.55■□□□□ 0.24
SKA3-202ENST00000314759 CAVIN1Q6NZI2 390 aaKnown RBP16.55■□□□□ 0.24
SKA3-202ENST00000314759 CPSF1Q10570 1443 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms